Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0584G284 Amborella trichopoda HOM05D002593 ORTHO05D006476 9.4e-65 250.0 121 100.0
Actinidia06597 Actinidia chinensis HOM05D002593 ORTHO05D006476 1.2e-16 90.1 103 48.5
Glyma.08G003500 Glycine max HOM05D002593 ORTHO05D006476 1.5e-14 83.2 92 47.8
Atru.chr4.1131 Acer truncatum HOM05D002593 ORTHO05D006476 4.4e-14 81.6 98 46.9
Carub.0006s0769 Capsella rubella HOM05D002593 ORTHO05D006476 7.5e-14 80.9 76 55.3
Glyma.05G195900 Glycine max HOM05D002593 ORTHO05D006476 7.5e-14 80.9 92 47.8
CiPaw.07G076000 Carya illinoinensis HOM05D002593 ORTHO05D006476 1.3e-13 80.1 53 62.3
Aa31LG3G17840 Aethionema arabicum HOM05D002593 ORTHO05D006476 1.7e-13 79.7 112 42.9
VMungo0251G1864 Vigna mungo HOM05D002593 ORTHO05D006476 1.7e-13 79.7 92 45.7
AL6G19470 Arabidopsis lyrata HOM05D002593 ORTHO05D006476 2.9e-13 79.0 73 52.1
Thhalv10015845m.g Eutrema salsugineum HOM05D002593 ORTHO05D006476 2.9e-13 79.0 74 51.4
Gohir.A09G006100 Gossypium hirsutum HOM05D002593 ORTHO05D006476 3.7e-13 78.6 115 37.4
Eucgr.I00052 Eucalyptus grandis HOM05D002593 ORTHO05D006476 4.9e-13 78.2 48 64.6
Prupe.4G114800 Prunus persica HOM05D002593 ORTHO05D006476 4.9e-13 78.2 126 38.1
arahy.Tifrunner.gnm1.ann1.06HUX3 Arachis hypogaea HOM05D002593 ORTHO05D006476 6.4e-13 77.8 75 53.3
arahy.Tifrunner.gnm1.ann1.3HC2CW Arachis hypogaea HOM05D002593 ORTHO05D006476 6.4e-13 77.8 75 53.3
A10p28060 Brassica napus HOM05D002593 ORTHO05D006476 6.4e-13 77.8 55 61.8
RcHm_v2.0_Chr5g0020561 Rosa chinensis HOM05D002593 ORTHO05D006476 6.4e-13 77.8 61 60.7
Cfa002121 Carpinus fangiana HOM05D002593 ORTHO05D006476 8.3e-13 77.4 78 50.0
Dinv07258 Davidia involucrata HOM05D002593 ORTHO05D006476 8.3e-13 77.4 77 51.9
Phvul.009G151900 Phaseolus vulgaris HOM05D002593 ORTHO05D006476 8.3e-13 77.4 63 63.5
Sp6g34150 Schrenkiella parvula HOM05D002593 ORTHO05D006476 8.3e-13 77.4 68 54.4
AT5G08720 Arabidopsis thaliana HOM05D002593 ORTHO05D006476 1.4e-12 76.6 68 52.9
HanXRQChr03g0087641 Helianthus annuus HOM05D002593 ORTHO05D006476 3.2e-12 75.5 121 40.5
Lsat_1_v5_gn_1_80920 Lactuca sativa HOM05D002593 ORTHO05D006476 3.2e-12 75.5 70 54.3
EL10Ac4g09659 Beta vulgaris HOM05D002593 ORTHO05D006476 4.1e-12 75.1 79 46.8
Glyma.06G158400 Glycine max HOM05D002593 ORTHO05D006476 4.1e-12 75.1 79 53.2
Rhsim10G0129800 Rhododendron simsii HOM05D002593 ORTHO05D006476 4.1e-12 75.1 71 52.1
CsaV3_4G031190 Cucumis sativus L. HOM05D002593 ORTHO05D006476 5.4e-12 74.7 61 60.7
FvH4_3g12600 Fragaria vesca HOM05D002593 ORTHO05D006476 5.4e-12 74.7 64 56.2
Lalb_Chr23g0272731 Lupinus albus HOM05D002593 ORTHO05D006476 5.4e-12 74.7 52 65.4
Sabra05G0057500 Salix brachista HOM05D002593 ORTHO05D006476 5.4e-12 74.7 60 58.3
AUR62000559 Chenopodium quinoa HOM05D002593 ORTHO05D006476 7.1e-12 74.3 84 42.9
AUR62006910 Chenopodium quinoa HOM05D002593 ORTHO05D006476 7.1e-12 74.3 81 44.4
Gorai.006G006800 Gossypium raimondii HOM05D002593 ORTHO05D006476 7.1e-12 74.3 115 36.5
PSO170G1422 Papaver somniferum HOM05D002593 ORTHO05D006476 7.1e-12 74.3 53 58.5
HPP92_025044 Vanilla planifolia HOM05D002593 ORTHO05D006476 7.1e-12 74.3 52 69.2
MSTRG.3600 Avicennia marina HOM05D002593 ORTHO05D006476 9.2e-12 73.9 94 44.7
BraA10t44855Z Brassica rapa HOM05D002593 ORTHO05D006476 9.2e-12 73.9 54 61.1
Cpa.g.sc37.46 Carica papaya HOM05D002593 ORTHO05D006476 9.2e-12 73.9 84 45.2
MELO3C008996.2 Cucumis melo HOM05D002593 ORTHO05D006476 9.2e-12 73.9 61 59.0
Glyma.04G207200 Glycine max HOM05D002593 ORTHO05D006476 9.2e-12 73.9 56 62.5
PGR119G1937 Punica granatum HOM05D002593 ORTHO05D006476 9.2e-12 73.9 104 38.5
Thecc.01G142600 Theobroma cacao HOM05D002593 ORTHO05D006476 9.2e-12 73.9 59 52.5
Duzib187G0031 Durio zibethinus HOM05D002593 ORTHO05D006476 1.2e-11 73.6 48 62.5
Nitab4.5_0000066g0010 Nicotiana tabacum HOM05D002593 ORTHO05D006476 1.2e-11 73.6 63 52.4
QL01p049838 Quercus lobata HOM05D002593 ORTHO05D006476 1.2e-11 73.6 51 60.8
VMungo1309G1997 Vigna mungo HOM05D002593 ORTHO05D006476 1.2e-11 73.6 93 44.1
FAN25G3668 Fragaria x ananassa HOM05D002593 ORTHO05D006476 1.6e-11 73.2 72 52.8
Gohir.D09G005200 Gossypium hirsutum HOM05D002593 ORTHO05D006476 1.6e-11 73.2 115 36.5
Oeu042316.1 Olea europaea HOM05D002593 ORTHO05D006476 1.6e-11 73.2 47 66.0
SalBow7G4483 Salvia bowleyana HOM05D002593 ORTHO05D006476 1.6e-11 73.2 82 47.6
TAR381G1378 Trochodendron aralioides HOM05D002593 ORTHO05D006476 1.6e-11 73.2 52 61.5
C09p68260 Brassica napus HOM05D002593 ORTHO05D006476 2.1e-11 72.8 52 59.6
BolC9t59574H Brassica oleracea HOM05D002593 ORTHO05D006476 2.1e-11 72.8 52 59.6
Hund21782 Selenicereus undatus HOM05D002593 ORTHO05D006476 2.1e-11 72.8 124 37.1
GSVIVG01022377001 Vitis vinifera HOM05D002593 ORTHO05D006476 2.1e-11 72.8 48 62.5
CSS0004310 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 2.7e-11 72.4 91 42.9
ClCG04G001200 Citrullus lanatus HOM05D002593 ORTHO05D006476 2.7e-11 72.4 61 55.7
Hma1.2p1_0619F.1_g190350 Hydrangea macrophylla HOM05D002593 ORTHO05D006476 2.7e-11 72.4 65 52.3
Hma1.2p1_0619F.1_g190360 Hydrangea macrophylla HOM05D002593 ORTHO05D006476 2.7e-11 72.4 65 52.3
TAR381G0271 Trochodendron aralioides HOM05D002593 ORTHO05D006476 2.7e-11 72.4 52 61.5
PSO528G0279 Papaver somniferum HOM05D002593 ORTHO05D006476 3.5e-11 72.0 53 58.5
Potri.005G070700 Populus trichocarpa HOM05D002593 ORTHO05D006476 3.5e-11 72.0 52 59.6
CSS0033070 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 4.6e-11 71.6 91 42.9
Ciclev10000418m.g Citrus clementina HOM05D002593 ORTHO05D006476 4.6e-11 71.6 48 60.4
Migut.L00269 Erythranthe guttata HOM05D002593 ORTHO05D006476 4.6e-11 71.6 57 52.6
FAN16G0380 Fragaria x ananassa HOM05D002593 ORTHO05D006476 6.0e-11 71.2 47 63.8
FAN16G0459 Fragaria x ananassa HOM05D002593 ORTHO05D006476 6.0e-11 71.2 47 63.8
CAN.G610.52 Capsicum annuum HOM05D002593 ORTHO05D006476 7.8e-11 70.9 47 61.7
ECA248G3631 Erigeron canadensis HOM05D002593 ORTHO05D006476 7.8e-11 70.9 57 57.9
Medtr8g094800 Medicago truncatula HOM05D002593 ORTHO05D006476 7.8e-11 70.9 90 48.9
TWI31G0641 Tripterygium wilfordii HOM05D002593 ORTHO05D006476 7.8e-11 70.9 83 42.2
AagrBONN_evm.TU.Sc2ySwM_117.116 Anthoceros agrestis HOM05D002593 ORTHO05D006476 1.0e-10 70.5 69 49.3
TPR.G37380 Trifolium pratense HOM05D002593 ORTHO05D006476 1.0e-10 70.5 95 50.5
Manes.12G083900 Manihot esculenta HOM05D002593 ORTHO05D006476 1.3e-10 70.1 60 48.3
CANSAT01G0469 Cannabis sativa HOM05D002593 ORTHO05D006476 1.7e-10 69.7 46 65.2
Lj4g0024429 Lotus japonicus HOM05D002593 ORTHO05D006476 2.3e-10 69.3 92 42.4
Peaxi162Scf00076g01057 Petunia axillaris HOM05D002593 ORTHO05D006476 2.3e-10 69.3 73 52.1
TWI79G0542 Tripterygium wilfordii HOM05D002593 ORTHO05D006476 2.3e-10 69.3 65 49.2
Zm00001eb063890 Zea mays HOM05D002593 ORTHO05D006476 2.3e-10 69.3 112 41.1
Sopen05g004810 Solanum pennellii HOM05D002593 ORTHO05D006476 3.0e-10 68.9 46 63.0
PGSC0003DMG401014557 Solanum tuberosum HOM05D002593 ORTHO05D006476 3.0e-10 68.9 46 63.0
Sed0011819 Sechium edule HOM05D002593 ORTHO05D006476 3.9e-10 68.6 46 67.4
SMO230G0109 Selaginella moellendorffii HOM05D002593 ORTHO05D006476 3.9e-10 68.6 63 50.8
Aqoxy6G00211 Aquilegia oxysepala HOM05D002593 ORTHO05D006476 5.1e-10 68.2 51 58.8
Cc11_g02090 Coffea canephora HOM05D002593 ORTHO05D006476 5.1e-10 68.2 127 33.1
arahy.Tifrunner.gnm1.ann1.2HG3UE Arachis hypogaea HOM05D002593 ORTHO05D006476 6.6e-10 67.8 46 67.4
Lalb_Chr12g0202891 Lupinus albus HOM05D002593 ORTHO05D006476 6.6e-10 67.8 46 65.2
Os03g0837900 Oryza sativa ssp. japonica HOM05D002593 ORTHO05D006476 6.6e-10 67.8 46 67.4
Solyc05g009080.4 Solanum lycopersicum HOM05D002593 ORTHO05D006476 6.6e-10 67.8 73 47.9
DCAR_000693 Daucus carota HOM05D002593 ORTHO05D006476 8.6e-10 67.4 55 60.0
MD05G1249400 Malus domestica HOM05D002593 ORTHO05D006476 8.6e-10 67.4 47 59.6
Psat7g043240 Pisum sativum HOM05D002593 ORTHO05D006476 8.6e-10 67.4 94 43.6
Ah.06g188520 Amaranthus hybridus HOM05D002593 ORTHO05D006476 1.1e-09 67.0 47 55.3
arahy.Tifrunner.gnm1.ann1.VT8BG2 Arachis hypogaea HOM05D002593 ORTHO05D006476 1.1e-09 67.0 44 68.2
Mapoly0148s0001 Marchantia polymorpha HOM05D002593 ORTHO05D006476 1.1e-09 67.0 45 66.7
COL.COLO4_12118 Corchorus olitorius HOM05D002593 ORTHO05D003294 4.3e-09 65.1 43 60.5
CBR_g48801 Chara braunii HOM05D002593 ORTHO05D006476 5.6e-09 64.7 49 55.1
Lj6g0004942 Lotus japonicus HOM05D002593 ORTHO05D006476 5.6e-09 64.7 96 41.7
Pp3c16_9330 Physcomitrium patens HOM05D002593 ORTHO05D006476 5.6e-09 64.7 45 60.0
unitig_899.g14455 Utricularia gibba HOM05D002593 ORTHO05D006476 5.6e-09 64.7 43 62.8
Sopen01g030550 Solanum pennellii HOM05D002593 ORTHO05D008082 6.2e-08 61.2 75 41.3
CDE11G0220 Ceratophyllum demersum HOM05D002593 ORTHO05D008082 1.4e-07 60.1 88 37.5
PGSC0003DMG400000842 Solanum tuberosum HOM05D002593 ORTHO05D008082 3.1e-07 58.9 106 35.8
Nitab4.5_0002103g0100 Nicotiana tabacum HOM05D002593 ORTHO05D008082 1.2e-06 57.0 70 38.6
Cc01_g21690 Coffea canephora HOM05D002593 ORTHO05D008082 5.8e-06 54.7 52 46.2
SGA_v2.0_scaffold244G44338 Striga asiatica HOM05D002593 ORTHO05D006476 5.8e-06 54.7 49 49.0
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 9.9e-06 53.9 52 42.3


User provided reference genes

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