Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 3.7e-111 404.8 196 100.0
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.5e-43 179.5 197 50.3
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 4.3e-43 178.7 203 49.8
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 4.0e-41 172.2 202 49.0
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 2.0e-40 169.9 207 49.3
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 3.4e-40 169.1 165 53.3
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 7.6e-40 167.9 183 51.4
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.9e-39 166.0 203 48.3
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 7.1e-38 161.4 209 46.4
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 2.1e-37 159.8 208 46.6
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 7.9e-37 157.9 207 47.3
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 7.9e-37 157.9 204 45.6
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.0e-36 157.5 196 45.4
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 2.3e-36 156.4 202 43.6
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 1.9e-35 153.3 222 41.4
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.5e-35 152.9 198 47.0
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.6e-35 151.8 180 43.3
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 5.6e-35 151.8 200 47.0
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.4e-35 151.4 198 47.0
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 2.1e-34 149.8 198 46.5
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.1e-34 149.8 195 46.7
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 2.8e-34 149.4 205 44.4
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 2.8e-34 149.4 200 46.5
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 8.1e-34 147.9 214 46.3
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 1.1e-33 147.5 192 44.8
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 1.4e-33 147.1 216 41.7
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.8e-33 146.7 196 43.4
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.8e-33 146.7 196 43.4
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 2.4e-33 146.4 220 44.1
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 4.0e-33 145.6 202 42.1
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 4.0e-33 145.6 192 43.8
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.5e-32 143.7 196 42.3
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 2.0e-32 143.3 230 42.2
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 2.6e-32 142.9 198 43.9
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 2.6e-32 142.9 213 41.3
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 4.5e-32 142.1 201 44.8
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 4.5e-32 142.1 213 42.3
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 5.8e-32 141.7 202 42.6
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.3e-31 140.6 205 43.4
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.3e-31 140.6 208 43.8
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.3e-31 140.6 192 42.7
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-31 140.6 202 42.6
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 1.3e-31 140.6 213 40.4
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.7e-31 140.2 202 42.1
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.2e-31 139.8 205 41.5
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 2.2e-31 139.8 206 40.8
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 4.9e-31 138.7 183 45.4
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 6.4e-31 138.3 191 47.1
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 8.4e-31 137.9 173 48.0
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 8.4e-31 137.9 197 41.1
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.4e-30 137.1 208 43.3
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 3.2e-30 136.0 207 43.0
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 5.5e-30 135.2 213 41.3
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 7.1e-30 134.8 205 42.4
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 7.1e-30 134.8 201 39.8
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 1.2e-29 134.0 201 43.3
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 2.1e-29 133.3 197 39.6
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.7e-29 132.9 210 41.4
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 2.7e-29 132.9 196 41.8
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 4.6e-29 132.1 224 40.6
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.3e-28 130.6 199 41.7
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 2.3e-28 129.8 198 41.4
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 2.3e-28 129.8 203 39.9
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.3e-28 129.8 205 42.4
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 3.0e-28 129.4 197 39.1
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 3.0e-28 129.4 201 39.3
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 5.1e-28 128.6 201 40.8
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 5.1e-28 128.6 218 38.1
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 6.7e-28 128.3 198 39.9
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 6.7e-28 128.3 207 38.2
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 6.7e-28 128.3 217 39.6
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 1.1e-27 127.5 201 40.8
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.5e-27 127.1 218 37.2
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.5e-27 127.1 195 45.1
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 3.3e-27 125.9 196 39.3
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.3e-27 125.9 218 35.3
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 3.3e-27 125.9 196 39.3
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 4.3e-27 125.6 221 37.6
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 4.3e-27 125.6 137 51.1
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 9.6e-27 124.4 196 42.3
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.3e-26 124.0 202 41.1
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.3e-26 124.0 195 40.5
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 1.6e-26 123.6 197 42.1
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 1.6e-26 123.6 197 42.1
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 1.6e-26 123.6 197 42.1
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 2.8e-26 122.9 216 36.6
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 8.2e-26 121.3 207 40.6
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.1e-25 120.9 209 39.7
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 1.8e-25 120.2 201 38.8
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 3.1e-25 119.4 203 42.4
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 3.1e-25 119.4 203 42.4
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 3.1e-25 119.4 197 41.1
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 3.1e-25 119.4 197 41.1
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 4.0e-25 119.0 199 35.7
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 5.3e-25 118.6 217 35.9
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 6.9e-25 118.2 197 37.6
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 6.9e-25 118.2 197 37.6
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 6.9e-25 118.2 187 39.0
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 9.0e-25 117.9 240 36.2
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 1.2e-24 117.5 197 37.6
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 1.2e-24 117.5 197 37.6
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 1.2e-24 117.5 197 37.6
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.5e-24 117.1 217 37.3
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 1.5e-24 117.1 227 35.7
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.0e-24 116.7 218 38.5
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 2.0e-24 116.7 190 37.9
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.0e-24 116.7 196 39.8
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.6e-24 116.3 197 41.6
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 3.4e-24 115.9 195 36.4
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 4.5e-24 115.5 187 41.2
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 1.3e-23 114.0 200 39.0
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 1.3e-23 114.0 200 39.0
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 1.3e-23 114.0 200 39.0
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 1.3e-23 114.0 200 39.0
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.2e-23 113.2 172 40.1
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 2.2e-23 113.2 200 37.5
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 2.9e-23 112.8 221 35.7
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 2.9e-23 112.8 200 37.0
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 2.9e-23 112.8 194 35.1
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 4.9e-23 112.1 167 40.7
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 4.9e-23 112.1 221 39.8
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 8.4e-23 111.3 220 35.5
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 1.4e-22 110.5 177 36.2
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 7.1e-22 108.2 216 35.6
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 1.6e-21 107.1 209 35.4
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 2.7e-21 106.3 167 39.5
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 2.7e-21 106.3 227 33.9
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.0e-21 105.1 163 38.7
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 6.0e-21 105.1 187 36.9
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.0e-20 104.4 192 35.4
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 2.3e-20 103.2 241 31.1
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 5.1e-20 102.1 214 34.6
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.9e-19 100.1 181 36.5
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.3e-19 99.4 166 36.7
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 4.3e-19 99.0 192 39.6
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 4.3e-19 99.0 246 31.3
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 9.7e-19 97.8 187 35.3
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 8.2e-18 94.7 171 39.8
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 1.8e-17 93.6 178 36.0
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.9e-17 91.7 171 39.2
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 1.2e-16 90.9 189 37.6
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 5.9e-16 88.6 193 34.7
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.2e-15 86.7 191 33.0
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.2e-15 86.7 198 33.3
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 1.4e-14 84.0 189 33.3
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 1.4e-14 84.0 189 33.3
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 5.5e-14 82.0 188 32.4
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 5.5e-14 82.0 188 32.4
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 7.2e-14 81.6 188 31.9
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 9.4e-14 81.3 189 34.4
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 4.6e-13 79.0 107 39.3
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 4.6e-13 79.0 151 35.1
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 7.9e-13 78.2 195 32.3
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.0e-12 77.8 244 30.7
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.8e-12 77.0 169 35.5
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 1.8e-12 77.0 178 33.1
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 2.3e-12 76.6 196 33.7
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 6.7e-12 75.1 210 31.4
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.5e-11 73.9 140 35.7
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.5e-11 73.9 190 33.2
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 2.0e-11 73.6 108 40.7
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 9.7e-11 71.2 170 34.1
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 1.1e-09 67.8 127 37.8
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 1.1e-09 67.8 62 54.8
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.4e-09 67.4 115 34.8
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 1.5e-08 63.9 92 38.0
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 2.0e-08 63.5 90 36.7
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 3.4e-08 62.8 162 29.0
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 4.5e-08 62.4 80 37.5
Nn5g27936 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.3e-07 60.8 108 36.1
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.1e-06 57.8 99 40.4
SEGI_38674 Sequoiadendron giganteum HOM05D004006 ORTHO05D386779 9.4e-06 54.7 142 26.8


User provided reference genes

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