Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0347G001 Amborella trichopoda HOM05D004104 ORTHO05D004755 1.2e-21 105.9 68 100.0
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 4.7e-13 77.4 66 81.8
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 3.0e-12 74.7 66 74.2
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 4.0e-12 74.3 66 59.1
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 3.4e-11 71.2 65 60.0
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.2e-10 68.6 65 56.9
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.8e-10 68.2 65 56.9
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 2.8e-10 68.2 66 54.5
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 2.8e-10 68.2 66 54.5
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 4.8e-10 67.4 66 54.5
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.4e-09 65.9 65 69.2
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 2.7e-08 61.6 67 53.7
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 2.7e-08 61.6 63 55.6
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 4.5e-08 60.8 63 55.6
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 4.5e-08 60.8 63 54.0
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 4.5e-08 60.8 60 56.7
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 4.5e-08 60.8 60 56.7
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 4.5e-08 60.8 63 54.0
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 5.9e-08 60.5 63 52.4
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.0e-07 59.7 63 52.4
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.0e-07 59.7 66 63.6
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.0e-07 59.7 63 54.0
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 1.0e-07 59.7 63 54.0
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.7e-07 58.9 65 50.8
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 1.7e-07 58.9 64 53.1
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 2.3e-07 58.5 67 53.7
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.9e-07 58.2 61 54.1
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.9e-07 58.2 61 54.1
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.9e-07 58.2 61 54.1
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 2.9e-07 58.2 67 52.2
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 3.8e-07 57.8 63 49.2
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 5.0e-07 57.4 61 54.1
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 6.6e-07 57.0 63 49.2
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 6.6e-07 57.0 61 55.7
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 8.6e-07 56.6 63 50.8
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 1.1e-06 56.2 63 52.4
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 1.1e-06 56.2 63 50.8
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 1.1e-06 56.2 62 53.2
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 1.1e-06 56.2 62 53.2
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 1.5e-06 55.8 60 60.0
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 1.5e-06 55.8 63 50.8
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 1.9e-06 55.5 61 50.8
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 1.9e-06 55.5 61 50.8
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 2.5e-06 55.1 59 52.5
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.5e-06 55.1 65 47.7
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 3.3e-06 54.7 63 49.2
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 4.2e-06 54.3 63 49.2
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 4.2e-06 54.3 63 47.6
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 5.5e-06 53.9 65 49.2
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 5.5e-06 53.9 64 54.7
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 7.2e-06 53.5 63 47.6
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 7.2e-06 53.5 63 46.0


User provided reference genes

Program Settings