Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0326G030 Amborella trichopoda HOM05D006616 ORTHO05D008435 1.9e-307 1058.5 594 100.0
MBI16_g32949_MAGBIO Magnolia biondii HOM05D006616 ORTHO05D008435 6.7e-140 501.9 490 62.2
Dinv27270 Davidia involucrata HOM05D006616 ORTHO05D008435 1.0e-132 478.0 469 64.0
TAR622G0026 Trochodendron aralioides HOM05D006616 ORTHO05D008435 6.7e-132 475.3 541 56.2
Hma1.2p1_2178F.1_g316210 Hydrangea macrophylla HOM05D006616 ORTHO05D008435 1.2e-131 474.6 467 62.1
Actinidia03423 Actinidia chinensis HOM05D006616 ORTHO05D008435 5.5e-126 455.7 469 60.3
Nn3g18184 Nelumbo nucifera HOM05D006616 ORTHO05D008435 8.8e-124 448.4 551 54.6
CSS0027023 Camellia sinensis var. sinensis HOM05D006616 ORTHO05D008435 1.1e-121 441.4 468 61.1
Atru.chr1.1509 Acer truncatum HOM05D006616 ORTHO05D008435 1.6e-120 437.6 477 60.0
GSVIVG01025818001 Vitis vinifera HOM05D006616 ORTHO05D008435 7.7e-120 435.3 562 52.3
Manes.09G002500 Manihot esculenta HOM05D006616 ORTHO05D008435 1.0e-119 434.9 491 55.8
Cc10_g12770 Coffea canephora HOM05D006616 ORTHO05D008435 2.5e-118 430.3 481 57.8
Aqoxy3G00148 Aquilegia oxysepala HOM05D006616 ORTHO05D008435 3.2e-118 429.9 525 55.2
Rhsim11G0071400 Rhododendron simsii HOM05D006616 ORTHO05D008435 4.7e-117 426.0 554 52.5
PGR042G1816 Punica granatum HOM05D006616 ORTHO05D008435 6.1e-117 425.6 470 57.2
TWI74G0800 Tripterygium wilfordii HOM05D006616 ORTHO05D008435 1.0e-116 424.9 470 58.7
Hund19065 Selenicereus undatus HOM05D006616 ORTHO05D008435 1.8e-116 424.1 467 58.2
PSO478G1375 Papaver somniferum HOM05D006616 ORTHO05D008435 8.8e-116 421.8 468 57.5
SalBow2G2978 Salvia bowleyana HOM05D006616 ORTHO05D008435 1.5e-115 421.0 474 51.3
Peaxi162Scf00066g00130 Petunia axillaris HOM05D006616 ORTHO05D008435 3.4e-115 419.9 491 55.4
Prupe.7G020500 Prunus persica HOM05D006616 ORTHO05D008435 4.4e-115 419.5 483 57.1
Oeu038315.2 Olea europaea HOM05D006616 ORTHO05D008435 7.5e-115 418.7 488 54.9
SGA_v2.0_scaffold25G11136 Striga asiatica HOM05D006616 ORTHO05D008435 8.3e-114 415.2 468 56.0
RcHm_v2.0_Chr3g0494671 Rosa chinensis HOM05D006616 ORTHO05D008435 3.1e-113 413.3 496 56.9
MSTRG.24176 Avicennia marina HOM05D006616 ORTHO05D008435 5.4e-113 412.5 474 55.7
VMungo0720G0485 Vigna mungo HOM05D006616 ORTHO05D008435 5.4e-113 412.5 549 51.7
Potri.006G032200 Populus trichocarpa HOM05D006616 ORTHO05D008435 2.0e-112 410.6 473 55.6
Ca_02795_v3 Cicer arietinum L. HOM05D006616 ORTHO05D008435 2.7e-112 410.2 477 57.7
CDE04G3611 Ceratophyllum demersum HOM05D006616 ORTHO05D008435 5.9e-112 409.1 545 50.8
Thecc.05G123900 Theobroma cacao HOM05D006616 ORTHO05D008435 5.9e-112 409.1 473 55.6
CANSAT78G0100 Cannabis sativa HOM05D006616 ORTHO05D008435 1.0e-111 408.3 502 54.8
Gohir.A11G305800 Gossypium hirsutum HOM05D006616 ORTHO05D008435 2.3e-111 407.1 462 56.9
Duzib128G1745 Durio zibethinus HOM05D006616 ORTHO05D008435 3.8e-111 406.4 461 56.2
CAN.G526.15 Capsicum annuum HOM05D006616 ORTHO05D008435 5.0e-111 406.0 471 55.4
Lj5g0015037 Lotus japonicus HOM05D006616 ORTHO05D008435 2.5e-110 403.7 546 50.7
Ah.13g077310 Amaranthus hybridus HOM05D006616 ORTHO05D008435 3.3e-110 403.3 554 52.3
CSS0040058 Camellia sinensis var. sinensis HOM05D006616 ORTHO05D008435 7.3e-110 402.1 468 57.9
QL07p014063 Quercus lobata HOM05D006616 ORTHO05D008435 7.3e-110 402.1 702 43.3
Eucgr.A02183 Eucalyptus grandis HOM05D006616 ORTHO05D008435 9.5e-110 401.7 497 54.1
arahy.Tifrunner.gnm1.ann1.958W0C Arachis hypogaea HOM05D006616 ORTHO05D008435 1.6e-109 401.0 620 48.2
Gorai.007G351400 Gossypium raimondii HOM05D006616 ORTHO05D008435 1.6e-109 401.0 462 56.9
MD00G1150000 Malus domestica HOM05D006616 ORTHO05D008435 2.8e-109 400.2 485 53.6
Cfa019948 Carpinus fangiana HOM05D006616 ORTHO05D008435 3.6e-109 399.8 650 46.6
Gohir.D11G321200 Gossypium hirsutum HOM05D006616 ORTHO05D008435 6.1e-109 399.1 462 56.5
arahy.Tifrunner.gnm1.ann1.QA0LD5 Arachis hypogaea HOM05D006616 ORTHO05D008435 8.0e-109 398.7 620 47.7
HanXRQChr05g0149371 Helianthus annuus HOM05D006616 ORTHO05D008435 1.0e-108 398.3 489 54.2
Phvul.007G243700 Phaseolus vulgaris HOM05D006616 ORTHO05D008435 1.8e-108 397.5 472 54.9
ECA246G4188 Erigeron canadensis HOM05D006616 ORTHO05D008435 3.0e-108 396.7 483 54.5
CiPaw.10G044000 Carya illinoinensis HOM05D006616 ORTHO05D008435 5.2e-108 396.0 635 46.5
TPR.G13802 Trifolium pratense HOM05D006616 ORTHO05D008435 4.4e-107 392.9 469 56.3
Migut.N03264 Erythranthe guttata HOM05D006616 ORTHO05D008435 5.7e-107 392.5 490 55.3
AUR62021025 Chenopodium quinoa HOM05D006616 ORTHO05D008435 2.2e-106 390.6 578 48.1
Sabra06G0021500 Salix brachista HOM05D006616 ORTHO05D008435 2.9e-106 390.2 473 54.8
Lalb_Chr21g0316821 Lupinus albus HOM05D006616 ORTHO05D008435 6.4e-106 389.0 469 57.1
Ciclev10011646m.g Citrus clementina HOM05D006616 ORTHO05D008435 5.4e-105 386.0 468 55.6
Glyma.02G162000 Glycine max HOM05D006616 ORTHO05D008435 7.0e-105 385.6 478 54.4
AUR62018417 Chenopodium quinoa HOM05D006616 ORTHO05D008435 2.7e-104 383.6 484 54.3
Medtr1g051155 Medicago truncatula HOM05D006616 ORTHO05D008435 3.5e-104 383.3 469 55.0
FAN26G1972 Fragaria x ananassa HOM05D006616 ORTHO05D008435 1.7e-103 380.9 466 56.7
Sopen11g001110 Solanum pennellii HOM05D006616 ORTHO05D008435 6.6e-103 379.0 469 55.2
EL10Ac3g07308 Beta vulgaris HOM05D006616 ORTHO05D008435 2.5e-102 377.1 474 53.8
Os01g0916300 Oryza sativa ssp. japonica HOM05D006616 ORTHO05D008435 4.3e-102 376.3 474 51.7
Solyc11g005110.3 Solanum lycopersicum HOM05D006616 ORTHO05D008435 9.5e-102 375.2 524 50.8
FAN28G1824 Fragaria x ananassa HOM05D006616 ORTHO05D008435 1.6e-101 374.4 466 56.4
Sed0024074 Sechium edule HOM05D006616 ORTHO05D008435 2.1e-101 374.0 522 51.9
CsaV3_3G040470 Cucumis sativus L. HOM05D006616 ORTHO05D008435 1.8e-100 370.9 544 49.6
HPP92_023122 Vanilla planifolia HOM05D006616 ORTHO05D008435 1.8e-100 370.9 563 48.5
Lj7A350T24 Lonicera japonica HOM05D006616 ORTHO05D008435 4.0e-100 369.8 506 46.8
Psat6g087360 Pisum sativum HOM05D006616 ORTHO05D008435 5.2e-100 369.4 475 53.9
FAN19G2668 Fragaria x ananassa HOM05D006616 ORTHO05D008435 9.8e-99 365.2 469 55.0
THA.LOC104815412 Tarenaya hassleriana HOM05D006616 ORTHO05D008435 3.7e-98 363.2 495 50.1
PSO017G2359 Papaver somniferum HOM05D006616 ORTHO05D008435 6.4e-98 362.5 411 56.7
Aa31LG3G1010 Aethionema arabicum HOM05D006616 ORTHO05D008435 8.3e-98 362.1 487 52.4
Zm00001eb364810 Zea mays HOM05D006616 ORTHO05D008435 2.4e-97 360.5 472 52.1
AL4G39000 Arabidopsis lyrata HOM05D006616 ORTHO05D008435 6.0e-96 355.9 505 50.9
DCAR_014373 Daucus carota HOM05D006616 ORTHO05D008435 1.7e-95 354.4 534 47.4
Thhalv10002504m.g Eutrema salsugineum HOM05D006616 ORTHO05D008435 1.9e-94 350.9 488 50.6
Sp4g23340 Schrenkiella parvula HOM05D006616 ORTHO05D008435 4.3e-94 349.7 476 51.9
AT2G41020 Arabidopsis thaliana HOM05D006616 ORTHO05D008435 4.7e-93 346.3 509 48.7
BcaC02g12875 Brassica carinata HOM05D006616 ORTHO05D008435 6.8e-92 342.4 476 49.4
C04p68740 Brassica napus HOM05D006616 ORTHO05D008435 8.9e-92 342.0 476 51.3
BraA04t18591Z Brassica rapa HOM05D006616 ORTHO05D002641 2.0e-91 340.9 475 51.6
unitig_52.g17546 Utricularia gibba HOM05D006616 ORTHO05D008435 2.0e-91 340.9 470 52.1
A04p31340 Brassica napus HOM05D006616 ORTHO05D002641 1.7e-90 337.8 473 50.7
Pp3c10_1890 Physcomitrium patens HOM05D006616 ORTHO05D008435 1.9e-89 334.3 551 45.6
Pp3c10_1896 Physcomitrium patens HOM05D006616 ORTHO05D008435 1.9e-89 334.3 551 45.6
BolC4t28379H Brassica oleracea HOM05D006616 ORTHO05D008435 2.3e-87 327.4 469 50.3
Carub.0004s2335 Capsella rubella HOM05D006616 ORTHO05D008435 3.9e-87 326.6 489 47.9
Mapoly0043s0041 Marchantia polymorpha HOM05D006616 ORTHO05D008435 3.9e-87 326.6 569 43.2
CARHR136140 Cardamine hirsuta HOM05D006616 ORTHO05D008435 8.1e-85 318.9 448 52.7
Lsat_1_v5_gn_6_110180 Lactuca sativa HOM05D006616 ORTHO05D008435 2.0e-83 314.3 607 42.3
FvH4_1g29230 Fragaria vesca HOM05D006616 ORTHO05D008435 1.7e-79 301.2 467 50.3
Nitab4.5_0001168g0150 Nicotiana tabacum HOM05D006616 ORTHO05D008435 8.1e-77 292.4 517 38.7
ClCG10G015990 Citrullus lanatus HOM05D006616 ORTHO05D008435 2.0e-75 287.7 489 47.2
Haze_20291 Corylus avellana HOM05D006616 ORTHO05D008435 1.4e-73 281.6 904 33.7
MELO3C009780.2 Cucumis melo HOM05D006616 ORTHO05D008435 6.4e-66 256.1 551 42.1
SEGI_28853 Sequoiadendron giganteum HOM05D006616 ORTHO05D008435 1.3e-61 241.9 367 51.0
Hma1.2p1_2178F.1_g316200 Hydrangea macrophylla HOM05D006616 ORTHO05D008435 4.3e-54 216.9 255 50.2
Sc13g0000840 Simmondsia chinensis HOM05D006616 ORTHO05D008435 2.9e-50 204.1 240 51.7
AagrBONN_evm.TU.Sc2ySwM_228.200 Anthoceros agrestis HOM05D006616 ORTHO05D008435 1.2e-48 198.7 275 44.4
Nitab4.5_0003863g0020 Nicotiana tabacum HOM05D006616 ORTHO05D008435 1.1e-46 192.2 231 46.3
SEGI_15760 Sequoiadendron giganteum HOM05D006616 ORTHO05D008435 9.0e-44 182.6 142 66.2
Cpa.g.sc33.190 Carica papaya HOM05D006616 ORTHO05D008435 9.7e-38 162.5 227 47.1
Nitab4.5_0003863g0030 Nicotiana tabacum HOM05D006616 ORTHO05D008435 1.2e-35 155.6 224 45.5
CBR_g8767 Chara braunii HOM05D006616 ORTHO05D008435 5.9e-35 153.3 395 39.2
Actinidia25416 Actinidia chinensis HOM05D006616 ORTHO05D008435 1.1e-33 149.1 233 41.6
SMO339G0010 Selaginella moellendorffii HOM05D006616 ORTHO05D008435 7.2e-33 146.4 97 76.3
FAN23G2418 Fragaria x ananassa HOM05D006616 ORTHO05D008435 4.7e-32 143.7 82 90.2
COL.COLO4_33517 Corchorus olitorius HOM05D006616 ORTHO05D008435 6.1e-32 143.3 160 53.1
vmacro00862 Vaccinium macrocarpon HOM05D006616 ORTHO05D008435 3.3e-30 137.5 107 67.3
Migut.C01363 Erythranthe guttata HOM05D006616 ORTHO05D008435 3.0e-23 114.4 171 43.9
SHI24850 Sapria himalayana HOM05D006616 ORTHO05D008435 9.7e-22 109.4 162 43.8
Psat1g016240 Pisum sativum HOM05D006616 ORTHO05D008435 4.8e-21 107.1 162 46.3
Psat7g065560 Pisum sativum HOM05D006616 ORTHO05D008435 1.4e-20 105.5 152 47.4
MCO09G511 Micromonas commoda HOM05D006616 ORTHO05D008435 5.9e-19 100.1 345 37.7
vmacro00863 Vaccinium macrocarpon HOM05D006616 ORTHO05D008435 1.9e-17 95.1 156 41.7
PSO478G1191 Papaver somniferum HOM05D006616 ORTHO05D008435 1.2e-16 92.4 180 47.2
MBI16_g47221_MAGBIO Magnolia biondii HOM05D006616 ORTHO05D008435 8.0e-16 89.7 163 38.7
Cre12.g527600 Chlamydomonas reinhardtii HOM05D006616 ORTHO05D008435 4.4e-14 84.0 88 51.1
BcaC02g07966 Brassica carinata HOM05D001681 ORTHO05D001589 3.8e-10 70.9 50 70.0
Actinidia29490 Actinidia chinensis HOM05D006616 ORTHO05D008435 5.5e-09 67.0 79 49.4


User provided reference genes

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