Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 2.2e-263 911.8 466 100.0
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 3.0e-127 459.5 477 53.7
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.7e-122 443.7 470 52.8
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.8e-119 433.7 478 52.5
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 4.2e-113 412.5 489 49.1
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 2.7e-112 409.8 484 50.0
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 2.7e-112 409.8 484 50.0
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 7.4e-110 401.7 492 47.8
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 1.4e-108 397.5 493 48.1
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 5.9e-107 392.1 484 47.5
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 7.7e-107 391.7 485 47.0
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 1.3e-106 391.0 478 47.1
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.3e-106 391.0 488 47.1
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.7e-106 390.6 478 46.9
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.2e-106 390.2 486 48.1
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 2.9e-106 389.8 470 48.9
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.9e-106 389.8 490 47.8
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 5.0e-106 389.0 483 47.0
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 5.0e-106 389.0 488 46.9
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 1.1e-105 387.9 489 47.9
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.5e-105 386.7 482 47.3
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 5.5e-105 385.6 479 46.3
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 5.5e-105 385.6 482 47.3
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 5.5e-105 385.6 480 46.7
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 5.5e-105 385.6 480 47.3
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 7.2e-105 385.2 482 48.1
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 4.7e-104 382.5 478 47.1
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 6.1e-104 382.1 487 47.0
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 8.0e-104 381.7 461 50.5
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.0e-103 381.3 463 48.4
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 3.0e-103 379.8 474 46.6
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 6.7e-103 378.6 495 47.9
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 8.8e-103 378.3 484 46.9
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.1e-102 377.9 465 48.6
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.5e-102 377.5 479 48.4
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.5e-102 377.5 481 47.2
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 3.3e-102 376.3 481 46.6
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 5.7e-102 375.6 467 46.7
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 7.5e-102 375.2 483 47.2
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 9.7e-102 374.8 475 46.9
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 1.3e-101 374.4 472 49.6
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.7e-101 374.0 479 47.4
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.8e-101 373.2 472 47.2
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 6.3e-101 372.1 481 47.0
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.4e-100 370.9 492 46.5
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 2.4e-100 370.2 476 47.3
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.6e-99 367.5 481 45.7
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 5.9e-99 365.5 395 51.1
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.0e-98 364.8 477 49.7
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 5.0e-98 362.5 422 48.8
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.1e-97 361.3 493 44.6
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.5e-97 360.9 430 49.3
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 1.9e-97 360.5 477 45.5
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 3.2e-97 359.8 396 50.0
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 7.2e-97 358.6 479 46.1
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 1.2e-96 357.8 477 45.9
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 4.7e-96 355.9 472 45.3
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.8e-95 354.0 445 47.0
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 2.3e-95 353.6 460 46.3
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 3.4e-94 349.7 482 44.8
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 4.4e-94 349.4 477 45.1
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 9.8e-94 348.2 458 46.5
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 8.3e-93 345.1 486 44.9
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 8.3e-93 345.1 616 38.3
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 5.4e-92 342.4 321 56.7
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.2e-91 341.3 373 49.9
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 2.0e-91 340.5 498 42.6
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 2.7e-91 340.1 390 50.8
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 2.7e-91 340.1 469 43.7
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 5.9e-91 339.0 478 45.8
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 1.0e-90 338.2 469 44.8
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.3e-90 337.8 481 43.9
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 5.0e-90 335.9 478 42.3
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.0e-90 335.9 471 42.5
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 8.5e-90 335.1 478 42.7
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.1e-89 334.7 475 44.0
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.5e-89 334.3 544 41.4
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 5.5e-89 332.4 489 43.1
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 5.5e-89 332.4 370 50.0
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 9.4e-89 331.6 476 43.5
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 5.2e-87 325.9 477 43.4
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 8.8e-87 325.1 462 43.5
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.5e-86 324.3 481 43.2
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 3.4e-86 323.2 477 43.0
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 5.7e-86 322.4 427 43.3
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 1.7e-85 320.9 479 42.0
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.7e-85 320.9 460 42.4
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 2.8e-85 320.1 447 45.0
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 3.7e-85 319.7 484 42.4
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.1e-84 318.2 445 45.4
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.4e-84 317.8 476 43.5
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 2.4e-84 317.0 449 43.2
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 2.4e-84 317.0 480 41.9
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 5.4e-84 315.8 475 42.7
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 5.4e-84 315.8 478 41.6
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 9.2e-84 315.1 481 42.6
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.6e-83 314.3 466 41.2
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 1.6e-83 314.3 405 45.7
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 2.0e-83 313.9 485 41.6
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 4.5e-83 312.8 486 41.8
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 4.5e-83 312.8 420 45.5
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.7e-82 310.8 478 40.8
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 2.9e-82 310.1 540 38.7
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 5.0e-82 309.3 478 41.8
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 5.0e-82 309.3 313 52.4
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 6.6e-82 308.9 313 52.1
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.5e-81 307.8 471 43.7
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.5e-81 307.8 473 39.5
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.9e-81 307.4 461 38.4
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 3.3e-81 306.6 478 41.6
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 5.2e-79 299.3 478 41.6
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 1.5e-78 297.7 370 46.2
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 2.6e-78 297.0 466 40.3
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 2.6e-78 297.0 479 40.7
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.4e-78 296.6 478 40.8
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.4e-78 296.2 479 40.9
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 7.5e-78 295.4 425 44.0
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 7.5e-78 295.4 306 51.6
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 7.5e-78 295.4 369 45.0
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.7e-77 293.1 480 41.2
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 3.7e-77 293.1 469 42.0
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.4e-76 291.2 317 50.5
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.4e-76 291.2 310 47.1
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.4e-76 291.2 329 45.3
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 2.4e-76 290.4 448 41.5
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 7.0e-76 288.9 343 49.6
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 1.2e-75 288.1 478 41.2
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 5.9e-75 285.8 404 41.6
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.0e-74 285.0 478 39.5
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.3e-74 283.9 479 40.9
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 3.0e-74 283.5 311 49.8
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 3.9e-74 283.1 283 53.7
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.9e-73 280.8 380 47.4
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 3.3e-73 280.0 383 43.3
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 3.3e-73 280.0 367 44.7
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 8.0e-72 275.4 475 37.7
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.4e-71 274.6 359 42.9
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 7.5e-70 268.9 474 37.6
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.7e-69 267.7 358 41.9
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 2.9e-69 266.9 461 36.2
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 9.2e-68 261.9 306 44.1
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 9.2e-68 261.9 312 47.8
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 2.7e-67 260.4 358 42.2
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 2.3e-66 257.3 214 61.2
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 3.0e-66 256.9 369 46.6
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 1.4e-63 248.1 368 40.2
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 3.1e-63 246.9 436 38.3
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.1e-63 246.9 295 42.4
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 3.4e-62 243.4 377 41.9
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 2.9e-61 240.4 209 57.9
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 8.1e-56 222.2 391 39.9
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 3.4e-54 216.9 402 35.3
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.6e-54 215.7 452 35.4
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.1e-49 201.8 304 38.5
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 3.4e-46 190.3 204 47.5
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 1.1e-44 185.3 143 62.2
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 2.4e-44 184.1 259 44.0
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 5.4e-44 183.0 268 40.3
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 2.3e-42 177.6 204 47.5
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 1.1e-41 175.3 197 45.7
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 1.9e-41 174.5 347 35.7
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 4.8e-40 169.9 389 33.7
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 3.9e-34 150.2 290 35.5
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 3.4e-30 137.1 140 48.6
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 1.2e-27 128.6 198 42.9
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 1.3e-26 125.2 213 38.5
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 6.7e-26 122.9 101 61.4
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 1.9e-25 121.3 231 35.9
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 1.6e-19 101.7 190 36.3
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 3.5e-19 100.5 99 54.5
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.3e-18 98.6 198 33.3
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.9e-17 94.7 83 55.4
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 7.4e-17 92.8 73 63.0
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 6.3e-16 89.7 71 56.3
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 5.9e-14 83.2 80 51.2
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 1.9e-12 78.2 105 42.9
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 7.4e-09 66.2 62 53.2
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 3.4e-06 57.4 50 56.0
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 7.7e-06 56.2 34 76.5


User provided reference genes

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