Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0259G001 Amborella trichopoda HOM05D002880 ORTHO05D003450 1.7e-102 375.9 186 100.0
AagrBONN_evm.TU.Sc2ySwM_368.861 Anthoceros agrestis HOM05D002880 ORTHO05D003450 2.1e-71 272.7 186 74.7
Mapoly0010s0094 Marchantia polymorpha HOM05D002880 ORTHO05D003450 9.7e-69 263.8 187 74.3
Pp3c17_20000 Physcomitrium patens HOM05D002880 ORTHO05D003450 1.1e-67 260.4 187 72.2
Nn5g30154 Nelumbo nucifera HOM05D002880 ORTHO05D003450 3.1e-67 258.8 188 71.3
Aqoxy5G01784 Aquilegia oxysepala HOM05D002880 ORTHO05D003450 5.3e-67 258.1 208 66.8
TWI09G0522 Tripterygium wilfordii HOM05D002880 ORTHO05D003450 2.6e-66 255.8 186 71.0
MELO3C007903.2 Cucumis melo HOM05D002880 ORTHO05D003450 1.7e-65 253.1 186 69.9
Sc07g0000970 Simmondsia chinensis HOM05D002880 ORTHO05D003450 1.7e-65 253.1 203 67.0
ClCG01G020300 Citrullus lanatus HOM05D002880 ORTHO05D003450 2.2e-65 252.7 189 69.8
MBI14_g08218_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 6.5e-65 251.1 213 64.3
CsaV3_6G047090 Cucumis sativus L. HOM05D002880 ORTHO05D003450 8.5e-65 250.8 186 69.9
QL06p032715 Quercus lobata HOM05D002880 ORTHO05D003450 2.5e-64 249.2 188 68.1
Cfa006971 Carpinus fangiana HOM05D002880 ORTHO05D003450 4.2e-64 248.4 189 69.8
THA.LOC104804262 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 4.2e-64 248.4 186 68.3
Solyc02g083900.3 Solanum lycopersicum HOM05D002880 ORTHO05D003450 5.5e-64 248.1 197 66.0
Sopen02g028690 Solanum pennellii HOM05D002880 ORTHO05D003450 5.5e-64 248.1 197 66.0
Ciclev10024677m.g Citrus clementina HOM05D002880 ORTHO05D003450 7.2e-64 247.7 186 68.3
Dinv40086 Davidia involucrata HOM05D002880 ORTHO05D003450 7.2e-64 247.7 201 66.7
Lj2g0011330 Lotus japonicus HOM05D002880 ORTHO05D003450 7.2e-64 247.7 186 68.3
Actinidia17445 Actinidia chinensis HOM05D002880 ORTHO05D003450 9.4e-64 247.3 205 66.3
Peaxi162Scf00083g00425 Petunia axillaris HOM05D002880 ORTHO05D003450 9.4e-64 247.3 201 68.2
Potri.005G114300 Populus trichocarpa HOM05D002880 ORTHO05D003450 1.2e-63 246.9 189 68.8
Gohir.A11G175612 Gossypium hirsutum HOM05D002880 ORTHO05D003450 1.6e-63 246.5 190 68.9
Gohir.D11G183201 Gossypium hirsutum HOM05D002880 ORTHO05D003450 1.6e-63 246.5 190 68.9
Gorai.007G195100 Gossypium raimondii HOM05D002880 ORTHO05D003450 1.6e-63 246.5 190 68.9
HanXRQChr14g0441401 Helianthus annuus HOM05D002880 ORTHO05D003450 2.7e-63 245.7 199 66.3
SalBow3G1624 Salvia bowleyana HOM05D002880 ORTHO05D003450 2.7e-63 245.7 209 63.6
Ca_25825_v3 Cicer arietinum L. HOM05D002880 ORTHO05D003450 3.6e-63 245.4 186 67.2
Lj2C468G7 Lonicera japonica HOM05D002880 ORTHO05D003450 3.6e-63 245.4 196 66.3
Psat2g154720 Pisum sativum HOM05D002880 ORTHO05D003450 3.6e-63 245.4 188 68.1
Phvul.002G108900 Phaseolus vulgaris HOM05D002880 ORTHO05D003450 4.6e-63 245.0 188 68.6
Sabra05G0093500 Salix brachista HOM05D002880 ORTHO05D003450 4.6e-63 245.0 189 69.3
THA.LOC104819750 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 4.6e-63 245.0 186 68.3
Atru.chr1.3786 Acer truncatum HOM05D002880 ORTHO05D003450 6.1e-63 244.6 188 67.6
Migut.H01155 Erythranthe guttata HOM05D002880 ORTHO05D003450 6.1e-63 244.6 212 62.3
Glyma.01G166400 Glycine max HOM05D002880 ORTHO05D003450 6.1e-63 244.6 187 69.0
PGR119G1290 Punica granatum HOM05D002880 ORTHO05D003450 7.9e-63 244.2 191 68.6
EL10Ac6g15479 Beta vulgaris HOM05D002880 ORTHO05D003450 1.0e-62 243.8 204 64.2
Gorai.003G009700 Gossypium raimondii HOM05D002880 ORTHO05D003450 1.4e-62 243.4 194 66.0
Sed0027366 Sechium edule HOM05D002880 ORTHO05D003450 1.4e-62 243.4 188 68.6
CANSAT01G1381 Cannabis sativa HOM05D002880 ORTHO05D003450 1.8e-62 243.0 193 67.4
Manes.01G145600 Manihot esculenta HOM05D002880 ORTHO05D003450 1.8e-62 243.0 188 69.1
Medtr5g022000 Medicago truncatula HOM05D002880 ORTHO05D003450 1.8e-62 243.0 186 68.3
Thecc.01G019100 Theobroma cacao HOM05D002880 ORTHO05D003450 1.8e-62 243.0 190 68.4
Cpa.g.sc6.247 Carica papaya HOM05D002880 ORTHO05D003450 2.3e-62 242.7 192 68.8
CiPaw.07G058400 Carya illinoinensis HOM05D002880 ORTHO05D003450 2.3e-62 242.7 187 68.4
COL.COLO4_21911 Corchorus olitorius HOM05D002880 ORTHO05D003450 2.3e-62 242.7 190 68.4
Gohir.D03G009500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 2.3e-62 242.7 194 66.0
SGA_v2.0_scaffold78G25389 Striga asiatica HOM05D002880 ORTHO05D003450 2.3e-62 242.7 203 65.0
Glyma.11G077000 Glycine max HOM05D002880 ORTHO05D003450 3.0e-62 242.3 188 68.1
Lsat_1_v5_gn_2_75940 Lactuca sativa HOM05D002880 ORTHO05D003450 3.0e-62 242.3 201 65.2
Lalb_Chr16g0377511 Lupinus albus HOM05D002880 ORTHO05D003450 3.0e-62 242.3 187 66.8
PSO541G3550 Papaver somniferum HOM05D002880 ORTHO05D003450 3.9e-62 241.9 215 62.3
Hund16489 Selenicereus undatus HOM05D002880 ORTHO05D003450 3.9e-62 241.9 204 65.7
GSVIVG01018783001 Vitis vinifera HOM05D002880 ORTHO05D003450 3.9e-62 241.9 189 68.3
HanXRQChr13g0414661 Helianthus annuus HOM05D002880 ORTHO05D003450 5.1e-62 241.5 200 65.0
Potri.007G057900 Populus trichocarpa HOM05D002880 ORTHO05D003450 5.1e-62 241.5 189 67.2
arahy.Tifrunner.gnm1.ann1.E76U4D Arachis hypogaea HOM05D002880 ORTHO05D003450 6.7e-62 241.1 191 67.0
arahy.Tifrunner.gnm1.ann1.FN5NT6 Arachis hypogaea HOM05D002880 ORTHO05D003450 6.7e-62 241.1 191 67.0
Ah.03g148750 Amaranthus hybridus HOM05D002880 ORTHO05D003450 8.8e-62 240.7 204 64.7
DCAR_025997 Daucus carota HOM05D002880 ORTHO05D003450 8.8e-62 240.7 200 65.5
Rhsim10G0212500 Rhododendron simsii HOM05D002880 ORTHO05D003450 8.8e-62 240.7 205 64.4
Duzib187G1438 Durio zibethinus HOM05D002880 ORTHO05D003450 1.5e-61 240.0 190 68.4
ECA238G3174 Erigeron canadensis HOM05D002880 ORTHO05D003450 2.0e-61 239.6 200 65.0
Lalb_Chr09g0321751 Lupinus albus HOM05D002880 ORTHO05D003450 2.0e-61 239.6 186 66.7
MD15G1245900 Malus domestica HOM05D002880 ORTHO05D003450 2.5e-61 239.2 200 64.5
PSO675G2090 Papaver somniferum HOM05D002880 ORTHO05D003450 4.3e-61 238.4 215 61.4
MSTRG.2713 Avicennia marina HOM05D002880 ORTHO05D003450 7.4e-61 237.7 201 63.7
A06p33500 Brassica napus HOM05D002880 ORTHO05D003450 9.7e-61 237.3 186 65.6
C03p58840 Brassica napus HOM05D002880 ORTHO05D003450 9.7e-61 237.3 186 65.6
BolC3t18143H Brassica oleracea HOM05D002880 ORTHO05D003450 9.7e-61 237.3 186 65.6
BraA06t26284Z Brassica rapa HOM05D002880 ORTHO05D003450 9.7e-61 237.3 186 65.6
MD02G1132600 Malus domestica HOM05D002880 ORTHO05D003450 1.3e-60 236.9 208 62.0
Oeu005318.1 Olea europaea HOM05D002880 ORTHO05D003450 1.7e-60 236.5 201 62.7
CSS0038464 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 2.2e-60 236.1 213 60.1
CSS0040827 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 2.2e-60 236.1 213 60.1
C09p13660 Brassica napus HOM05D002880 ORTHO05D003450 3.7e-60 235.3 187 66.3
BolC9t54256H Brassica oleracea HOM05D002880 ORTHO05D003450 3.7e-60 235.3 187 66.3
BraA09t36808Z Brassica rapa HOM05D002880 ORTHO05D003450 3.7e-60 235.3 187 66.3
BcaB07g31700 Brassica carinata HOM05D002880 ORTHO05D003450 4.8e-60 235.0 187 66.3
A09p11620 Brassica napus HOM05D002880 ORTHO05D003450 4.8e-60 235.0 189 66.1
Thhalv10024177m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 4.8e-60 235.0 197 66.0
Sp3g31350 Schrenkiella parvula HOM05D002880 ORTHO05D003450 4.8e-60 235.0 187 65.8
BcaB08g34776 Brassica carinata HOM05D002880 ORTHO05D003450 6.3e-60 234.6 187 66.3
Cc07_g10710 Coffea canephora HOM05D002880 ORTHO05D003450 6.3e-60 234.6 155 76.1
Eucgr.I02351 Eucalyptus grandis HOM05D002880 ORTHO05D003450 8.2e-60 234.2 189 66.1
CARHR108410 Cardamine hirsuta HOM05D002880 ORTHO05D003450 1.1e-59 233.8 187 66.3
Thhalv10022516m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 1.1e-59 233.8 187 66.3
AUR62003370 Chenopodium quinoa HOM05D002880 ORTHO05D003450 1.4e-59 233.4 204 61.8
Prupe.7G168000 Prunus persica HOM05D002880 ORTHO05D003450 1.4e-59 233.4 200 63.0
Carub.0003s3206 Capsella rubella HOM05D002880 ORTHO05D003450 1.8e-59 233.0 187 65.8
AUR62029462 Chenopodium quinoa HOM05D002880 ORTHO05D003450 1.8e-59 233.0 204 61.8
AL3G50950 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 2.4e-59 232.6 187 65.8
HPP92_000448 Vanilla planifolia HOM05D002880 ORTHO05D003450 2.4e-59 232.6 201 62.2
AL7G14960 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 3.1e-59 232.3 187 67.9
AT4G36080 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 4.1e-59 231.9 187 66.8
AT2G17930 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 5.3e-59 231.5 187 65.8
Carub.0007s0415 Capsella rubella HOM05D002880 ORTHO05D003450 1.5e-58 229.9 187 65.8
Aa31LG8G15100 Aethionema arabicum HOM05D002880 ORTHO05D003450 2.6e-58 229.2 190 64.2
CARHR244480 Cardamine hirsuta HOM05D002880 ORTHO05D003450 2.6e-58 229.2 188 64.9
C01p02960 Brassica napus HOM05D002880 ORTHO05D003450 3.4e-58 228.8 188 63.3
BolC1t00282H Brassica oleracea HOM05D002880 ORTHO05D003450 3.4e-58 228.8 188 63.3
A01p02660 Brassica napus HOM05D002880 ORTHO05D003450 4.5e-58 228.4 188 63.8
BraA01t00252Z Brassica rapa HOM05D002880 ORTHO05D003450 4.5e-58 228.4 188 63.8
TPR.G18175 Trifolium pratense HOM05D002880 ORTHO05D003450 2.2e-57 226.1 139 79.1
RcHm_v2.0_Chr2g0099461 Rosa chinensis HOM05D002880 ORTHO05D003450 3.8e-57 225.3 196 63.8
Haze_03765 Corylus avellana HOM05D002880 ORTHO05D003450 1.9e-56 223.0 189 65.1
FAN23G1788 Fragaria x ananassa HOM05D002880 ORTHO05D003450 3.2e-56 222.2 196 61.7
Sabra07G0049600 Salix brachista HOM05D002880 ORTHO05D003450 4.2e-56 221.9 232 55.2
FvH4_1g11860 Fragaria vesca HOM05D002880 ORTHO05D003450 5.5e-56 221.5 196 61.7
FAN19G0100 Fragaria x ananassa HOM05D002880 ORTHO05D003450 5.5e-56 221.5 196 61.7
FAN26G2624 Fragaria x ananassa HOM05D002880 ORTHO05D003450 9.4e-56 220.7 196 61.2
CBR_g31691 Chara braunii HOM05D002880 ORTHO05D003450 2.1e-55 219.5 197 61.9
FAN28G1007 Fragaria x ananassa HOM05D002880 ORTHO05D003450 7.9e-55 217.6 196 60.7
Lj6g0023005 Lotus japonicus HOM05D002880 ORTHO05D003450 1.8e-54 216.5 186 60.2
TAR381G0408 Trochodendron aralioides HOM05D002880 ORTHO05D003450 9.1e-51 204.1 132 78.0
CAN.G1671.12 Capsicum annuum HOM05D002880 ORTHO05D003450 2.9e-49 199.1 319 41.4
PRCOL_00005144 Prasinoderma coloniale HOM05D002880 ORTHO05D003450 2.9e-41 172.6 138 62.3
MCO16G028 Micromonas commoda HOM05D002880 ORTHO05D003450 6.5e-41 171.4 186 51.6
TAR625G0893 Trochodendron aralioides HOM05D002880 ORTHO05D003450 4.2e-40 168.7 100 80.0
Duzib147G0886 Durio zibethinus HOM05D002880 ORTHO05D003450 7.5e-37 157.9 190 49.5
SMO147G0347 Selaginella moellendorffii HOM05D002880 ORTHO05D003450 3.5e-34 149.1 195 46.2
Aa31LG6G13030 Aethionema arabicum HOM05D002880 ORTHO05D003450 1.5e-32 143.7 193 46.1
Actinidia22981 Actinidia chinensis HOM05D002880 ORTHO05D003450 2.0e-29 133.3 140 55.7
vmacro21922 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 5.4e-27 125.2 72 84.7
vmacro21921 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 1.2e-26 124.0 145 51.7
COL.COLO4_21196 Corchorus olitorius HOM05D002880 ORTHO05D003450 2.0e-26 123.2 100 65.0
SHI08554 Sapria himalayana HOM05D002880 ORTHO05D003450 3.5e-26 122.5 116 60.3
COL.COLO4_21736 Corchorus olitorius HOM05D002880 ORTHO05D003450 5.0e-25 118.6 100 63.0
BcaC04g22939 Brassica carinata HOM05D002880 ORTHO05D003450 8.6e-25 117.9 70 82.9
MELO3C000137.2 Cucumis melo HOM05D002880 ORTHO05D003450 7.2e-24 114.8 76 72.4
COL.COLO4_11117 Corchorus olitorius HOM05D002880 ORTHO05D003450 9.5e-24 114.4 80 68.8
Actinidia00882 Actinidia chinensis HOM05D002880 ORTHO05D003450 5.2e-22 108.6 67 80.6
Gohir.A02G170550 Gossypium hirsutum HOM05D002880 ORTHO05D003450 7.5e-21 104.8 109 53.2
SHI08553 Sapria himalayana HOM05D002880 ORTHO05D003450 2.8e-20 102.8 67 77.6
Cre02.g088750 Chlamydomonas reinhardtii HOM05D002880 ORTHO05D003450 1.0e-17 94.4 178 33.7
Lsat_1_v5_gn_9_110060 Lactuca sativa HOM05D002880 ORTHO05D002254 1.8e-14 83.6 53 71.7
Cfa023980 Carpinus fangiana HOM05D002880 ORTHO05D003450 1.2e-13 80.9 174 31.0
MELO3C027087.2 Cucumis melo HOM05D002880 ORTHO05D003450 2.6e-13 79.7 83 54.2
Nitab4.5_0003382g0080 Nicotiana tabacum HOM05D002880 ORTHO05D003450 2.9e-12 76.3 186 32.3
Lsat_1_v5_gn_4_55920 Lactuca sativa HOM05D002880 ORTHO05D003450 4.9e-12 75.5 65 64.6
Hma1.2p1_0258F.1_g104160 Hydrangea macrophylla HOM05D002880 ORTHO05D003450 9.2e-11 71.2 50 68.0
AL5G13110 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 1.8e-06 57.0 100 36.0
Zm00001eb044690 Zea mays HOM05D000173 ORTHO05D000316 8.9e-06 54.7 41 61.0


User provided reference genes

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