Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 1.5e-55 219.2 103 100.0
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 9.5e-34 146.7 91 72.5
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 3.1e-32 141.7 88 71.6
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 1.9e-29 132.5 90 70.0
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 4.6e-28 127.9 90 63.3
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 4.6e-28 127.9 90 63.3
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 2.5e-26 122.1 92 62.0
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 2.5e-26 122.1 88 63.6
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 2.8e-25 118.6 79 70.9
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 1.4e-24 116.3 86 58.1
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 4.4e-23 111.3 94 56.4
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 3.2e-21 105.1 89 53.9
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 9.2e-21 103.6 94 53.2
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 6.0e-20 100.9 96 52.1
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 2.3e-19 99.0 96 52.1
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 3.3e-18 95.1 90 53.3
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 9.6e-18 93.6 98 49.0
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 1.6e-17 92.8 49 81.6
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 1.8e-16 89.4 96 45.8
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 2.4e-16 89.0 89 47.2
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 2.4e-16 89.0 89 42.7
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 3.1e-16 88.6 93 47.3
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 5.3e-16 87.8 96 45.8
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 6.9e-16 87.4 88 47.7
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 9.0e-16 87.0 94 48.9
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 1.2e-15 86.7 88 47.7
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 1.2e-15 86.7 93 45.2
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 1.5e-15 86.3 93 47.3
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 2.6e-15 85.5 86 47.7
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 2.6e-15 85.5 93 40.9
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 3.4e-15 85.1 87 44.8
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 4.4e-15 84.7 91 40.7
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 4.4e-15 84.7 90 45.6
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 4.4e-15 84.7 93 44.1
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 4.4e-15 84.7 87 42.5
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 5.8e-15 84.3 93 44.1
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 5.8e-15 84.3 87 43.7
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 9.9e-15 83.6 85 44.7
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.3e-14 83.2 87 41.4
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 1.3e-14 83.2 95 44.2
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.3e-14 83.2 93 40.9
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 1.7e-14 82.8 86 41.9
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 1.7e-14 82.8 85 49.4
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.2e-14 82.4 90 44.4
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 2.2e-14 82.4 93 43.0
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 2.2e-14 82.4 93 43.0
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 2.9e-14 82.0 87 41.4
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.9e-14 82.0 87 42.5
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 4.9e-14 81.3 91 39.6
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 4.9e-14 81.3 93 40.9
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 4.9e-14 81.3 87 41.4
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 6.4e-14 80.9 91 38.5
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 6.4e-14 80.9 91 38.5
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 6.4e-14 80.9 93 43.0
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 6.4e-14 80.9 89 43.8
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 6.4e-14 80.9 93 40.9
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 6.4e-14 80.9 90 44.4
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 6.4e-14 80.9 90 44.4
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 6.4e-14 80.9 95 41.1
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 6.4e-14 80.9 90 42.2
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 6.4e-14 80.9 90 42.2
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 8.4e-14 80.5 91 38.5
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 8.4e-14 80.5 91 38.5
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 8.4e-14 80.5 91 38.5
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 8.4e-14 80.5 91 38.5
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 8.4e-14 80.5 91 38.5
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 8.4e-14 80.5 91 38.5
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 8.4e-14 80.5 91 38.5
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.1e-13 80.1 87 40.2
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.1e-13 80.1 86 46.5
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 1.4e-13 79.7 91 38.5
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 1.4e-13 79.7 91 38.5
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.9e-13 79.3 91 38.5
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 1.9e-13 79.3 86 44.2
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 1.9e-13 79.3 95 41.1
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 2.4e-13 79.0 91 44.0
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 3.2e-13 78.6 91 38.5
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 3.2e-13 78.6 91 39.6
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 3.2e-13 78.6 85 44.7
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 3.2e-13 78.6 85 44.7
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 3.2e-13 78.6 85 44.7
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 4.2e-13 78.2 90 41.1
AUR62041475 Chenopodium quinoa HOM05D005168 ORTHO05D006358 4.2e-13 78.2 102 43.1
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 4.2e-13 78.2 87 39.1
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 5.4e-13 77.8 90 42.2
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 5.4e-13 77.8 93 41.9
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 9.3e-13 77.0 90 42.2
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 9.3e-13 77.0 89 46.1
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 9.3e-13 77.0 86 41.9
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.6e-12 76.3 93 38.7
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 2.1e-12 75.9 86 47.7
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 2.7e-12 75.5 93 37.6
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 2.7e-12 75.5 86 43.0
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 3.5e-12 75.1 90 41.1
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 3.5e-12 75.1 90 41.1
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 3.5e-12 75.1 90 41.1
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 4.6e-12 74.7 93 37.6
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 4.6e-12 74.7 86 40.7
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 6.0e-12 74.3 97 39.2
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.0e-11 73.6 97 39.2
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 1.0e-11 73.6 49 63.3
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 1.0e-11 73.6 86 39.5
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 1.3e-11 73.2 97 38.1
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 1.7e-11 72.8 90 41.1
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 2.3e-11 72.4 88 43.2
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 2.3e-11 72.4 90 37.8
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 3.9e-11 71.6 82 41.5
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 5.1e-11 71.2 90 37.8
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 2.5e-10 68.9 68 48.5
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 3.3e-10 68.6 68 50.0
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.3e-09 66.6 86 37.2
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 1.3e-09 66.6 95 34.7
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.3e-09 66.6 95 34.7
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 1.1e-08 63.5 88 38.6
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 6.9e-08 60.8 78 38.5
SEGI_40975 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 6.9e-08 60.8 60 50.0
ECA238G0944 Erigeron canadensis HOM05D005168 ORTHO05D006358 1.5e-07 59.7 73 42.5
SHI17132 Sapria himalayana HOM05D005168 ORTHO05D006358 4.5e-07 58.2 40 55.0
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 2.9e-06 55.5 76 35.5
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 2.9e-06 55.5 80 35.0
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 4.9e-06 54.7 39 56.4


User provided reference genes

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