Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 8.0e-153 543.9 307 100.0
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.4e-133 479.2 307 90.2
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.1e-117 425.2 338 75.7
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 2.7e-116 422.5 307 80.5
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 4.4e-111 405.2 345 72.8
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.9e-102 375.9 336 70.5
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 1.9e-90 336.7 267 76.8
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 4.3e-90 335.5 267 77.2
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 4.0e-88 328.9 278 73.7
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 3.4e-87 325.9 286 71.7
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 7.6e-87 324.7 235 81.3
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 9.3e-85 317.8 344 57.3
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 1.0e-83 314.3 344 57.6
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 1.0e-83 314.3 344 56.7
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 1.5e-82 310.5 345 55.9
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 5.6e-82 308.5 344 55.8
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.6e-81 307.0 344 54.9
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.6e-81 307.0 344 54.9
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.1e-80 304.3 344 54.9
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 5.3e-80 302.0 344 54.9
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 9.0e-80 301.2 344 54.1
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.6e-79 299.7 316 57.3
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 4.5e-79 298.9 344 54.4
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 5.8e-79 298.5 344 54.7
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 1.0e-78 297.7 338 55.0
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 1.3e-78 297.4 344 54.1
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.3e-78 297.4 345 53.0
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.7e-78 297.0 344 54.4
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.7e-78 297.0 323 57.3
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.8e-78 295.8 344 54.1
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 3.8e-78 295.8 344 53.8
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 3.8e-78 295.8 344 53.2
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 4.9e-78 295.4 344 53.8
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.9e-78 295.4 344 54.1
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.1e-77 294.3 344 53.2
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.1e-77 294.3 344 54.1
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.1e-77 294.3 344 53.5
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.4e-77 293.9 344 53.8
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 2.5e-77 293.1 338 55.0
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 2.5e-77 293.1 345 54.5
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.2e-77 292.7 345 53.3
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 4.2e-77 292.4 345 52.8
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 9.3e-77 291.2 344 54.1
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 9.3e-77 291.2 344 53.2
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 2.1e-76 290.0 340 53.8
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 2.1e-76 290.0 344 53.8
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.5e-76 289.3 217 77.9
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 4.6e-76 288.9 344 53.8
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 6.0e-76 288.5 344 53.5
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.3e-75 287.3 344 53.2
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.8e-75 287.0 342 53.8
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 2.3e-75 286.6 368 51.9
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 5.1e-75 285.4 320 57.8
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 6.7e-75 285.0 334 53.9
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.9e-74 283.5 344 51.2
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 2.5e-74 283.1 310 55.8
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 3.3e-74 282.7 339 53.7
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 4.3e-74 282.3 338 53.3
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 5.7e-74 282.0 344 51.2
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 6.3e-73 278.5 333 53.2
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 8.2e-73 278.1 311 53.4
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.1e-72 277.7 344 51.2
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.4e-72 277.3 335 52.5
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 1.8e-72 276.9 344 51.5
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 4.1e-72 275.8 344 51.5
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 5.3e-72 275.4 345 50.4
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 5.3e-72 275.4 267 60.3
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 6.9e-72 275.0 340 52.1
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.0e-71 273.5 332 51.5
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 7.6e-71 271.6 265 63.4
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 3.8e-70 269.2 309 52.1
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 6.5e-70 268.5 320 51.2
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 8.5e-70 268.1 344 50.0
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.4e-69 267.3 255 59.6
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 3.2e-69 266.2 321 51.1
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 3.2e-69 266.2 321 51.1
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 5.5e-69 265.4 320 50.6
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 5.5e-69 265.4 346 48.6
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.6e-68 263.8 337 48.7
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.6e-68 263.8 344 50.0
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.1e-68 263.5 269 56.9
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 7.9e-68 261.5 334 49.1
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 3.9e-67 259.2 344 49.1
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 5.1e-67 258.8 344 48.5
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 5.1e-67 258.8 345 47.8
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 8.7e-67 258.1 336 47.9
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 8.7e-67 258.1 344 49.7
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.5e-66 257.3 343 50.1
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 5.7e-66 255.4 330 50.3
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 7.4e-66 255.0 344 49.7
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 9.7e-66 254.6 325 51.4
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.3e-65 254.2 251 57.8
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 2.2e-65 253.4 251 57.8
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 2.8e-65 253.1 317 53.3
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 2.8e-65 253.1 315 50.8
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.8e-65 252.3 273 54.6
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 6.3e-65 251.9 251 57.4
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 3.1e-64 249.6 237 59.5
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 4.1e-64 249.2 316 50.3
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 4.1e-64 249.2 244 64.3
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 4.1e-64 249.2 308 51.6
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 5.3e-64 248.8 343 49.0
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 5.3e-64 248.8 310 50.0
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 2.0e-63 246.9 314 49.0
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.2e-62 243.4 339 47.5
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.4e-61 240.7 305 50.2
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 4.2e-61 239.2 325 49.5
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 7.2e-61 238.4 344 45.9
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 2.1e-60 236.9 312 51.0
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.6e-60 236.1 344 48.0
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.6e-60 236.1 344 48.0
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 6.1e-60 235.3 344 46.2
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 1.0e-59 234.6 344 45.9
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.4e-59 234.2 344 45.3
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 8.8e-59 231.5 344 46.8
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 8.8e-59 231.5 319 50.8
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 7.4e-58 228.4 340 45.9
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 9.7e-58 228.0 344 46.5
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 9.7e-58 228.0 308 50.3
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.7e-57 226.1 341 46.3
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.8e-56 223.8 292 49.7
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.5e-55 220.7 341 44.0
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 3.4e-55 219.5 345 44.6
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 3.4e-55 219.5 344 44.5
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.0e-54 218.0 344 44.8
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 1.4e-53 214.2 394 40.6
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 4.2e-53 212.6 262 50.4
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 9.4e-53 211.5 332 40.4
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 6.1e-52 208.8 344 42.7
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 7.9e-52 208.4 343 43.4
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 7.9e-52 208.4 280 46.1
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 1.8e-51 207.2 312 45.8
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.5e-50 204.1 286 45.5
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 3.3e-50 203.0 293 46.4
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.7e-49 200.7 344 42.2
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 2.2e-49 200.3 134 82.8
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 4.8e-49 199.1 292 47.9
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 8.2e-49 198.4 199 60.8
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 1.1e-48 198.0 316 44.0
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.4e-48 197.6 290 45.5
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 3.1e-48 196.4 314 42.4
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 5.3e-48 195.7 264 48.9
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 9.1e-48 194.9 266 47.7
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.6e-47 193.4 344 41.0
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 2.2e-46 190.3 269 44.6
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 8.5e-46 188.3 343 40.2
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 2.5e-45 186.8 300 42.3
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 2.5e-45 186.8 344 40.4
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 1.0e-43 181.4 146 69.2
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.5e-42 177.6 334 40.7
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 2.5e-37 160.2 308 40.3
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 4.7e-36 156.0 243 42.4
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 4.7e-36 156.0 175 52.6
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 8.0e-36 155.2 267 42.3
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.0e-35 154.8 168 57.7
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 5.7e-34 149.1 229 43.7
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 2.2e-33 147.1 344 36.6
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 3.7e-33 146.4 268 41.4
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 2.7e-31 140.2 355 32.4
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.2e-28 131.3 250 40.4
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 2.1e-28 130.6 262 38.2
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 5.4e-24 115.9 280 35.4
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 1.6e-23 114.4 263 36.9
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 1.6e-23 114.4 166 46.4
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 2.7e-23 113.6 346 30.1
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 1.4e-19 101.3 258 34.9
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 1.4e-19 101.3 258 34.9
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 6.8e-19 99.0 57 98.2
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 4.4e-18 96.3 344 30.2
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 8.3e-17 92.0 127 52.8
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.9e-13 80.9 54 79.6
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 4.7e-12 76.3 111 48.6
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 6.2e-12 75.9 161 36.0
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 1.2e-10 71.6 263 30.8
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 6.0e-07 59.3 130 36.9
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 1.3e-06 58.2 125 40.8


User provided reference genes

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