Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 0.0e+00 1224.2 645 100.0
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 0.0e+00 1097.0 654 89.6
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 1.7e-282 975.7 654 81.3
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 1.3e-269 932.9 658 76.6
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 5.8e-254 880.9 652 75.6
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 1.4e-252 876.3 653 75.5
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 6.0e-251 870.9 653 74.3
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 1.3e-250 869.8 650 75.4
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 1.8e-247 859.4 650 72.8
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 3.4e-246 855.1 691 71.3
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 1.1e-244 850.1 665 70.5
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 1.9e-244 849.4 691 71.1
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 6.9e-239 830.9 654 71.6
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 4.5e-190 668.7 612 61.4
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 3.6e-139 499.6 637 48.8
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 1.9e-135 487.3 635 47.1
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.4e-135 486.9 633 47.7
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 1.6e-134 484.2 634 47.0
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 2.7e-134 483.4 649 45.8
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 4.3e-132 476.1 549 51.0
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 6.4e-128 462.2 661 45.1
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 3.5e-126 456.4 607 46.0
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 6.0e-126 455.7 581 47.5
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 1.0e-125 454.9 596 47.1
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 1.1e-124 451.4 532 50.0
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 1.5e-124 451.1 592 46.6
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 2.8e-123 446.8 628 45.7
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 2.4e-122 443.7 607 45.1
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 2.4e-122 443.7 607 45.1
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 2.4e-122 443.7 550 47.1
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 5.3e-122 442.6 678 43.8
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 2.6e-121 440.3 650 44.5
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 5.8e-121 439.1 647 43.6
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 1.3e-120 438.0 584 45.9
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 1.3e-120 438.0 643 44.5
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 2.2e-120 437.2 551 47.9
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 3.8e-120 436.4 640 45.0
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 1.1e-119 434.9 631 44.5
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 5.4e-119 432.6 643 44.5
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 5.4e-119 432.6 571 45.9
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 1.2e-118 431.4 575 45.6
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 1.8e-117 427.6 568 46.8
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 3.9e-117 426.4 583 45.6
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 7.4e-116 422.2 611 45.8
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 9.6e-116 421.8 648 41.7
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 2.1e-115 420.6 607 45.3
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 3.7e-115 419.9 634 43.5
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 8.1e-115 418.7 670 42.4
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.4e-114 417.9 614 45.1
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 1.8e-114 417.5 750 39.3
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 6.9e-114 415.6 612 43.1
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.5e-113 414.5 600 43.7
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 2.0e-113 414.1 650 42.2
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 2.9e-112 410.2 616 42.7
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.8e-112 409.8 661 42.7
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.9e-111 407.5 608 44.9
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 2.7e-110 403.7 646 42.1
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 3.5e-110 403.3 770 38.4
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.3e-109 401.4 662 41.7
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 1.8e-109 401.0 649 40.7
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 8.7e-109 398.7 657 42.8
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 1.1e-108 398.3 662 41.7
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 1.5e-108 397.9 643 42.1
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 5.6e-108 396.0 748 39.4
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 7.4e-108 395.6 625 41.4
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 2.1e-107 394.0 569 45.3
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 3.7e-107 393.3 576 44.8
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 1.8e-106 391.0 566 44.3
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 1.5e-105 387.9 626 41.9
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.7e-104 384.4 556 44.2
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 1.7e-104 384.4 682 39.4
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 3.8e-104 383.3 550 43.8
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 4.9e-104 382.9 552 43.3
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 6.5e-104 382.5 713 39.1
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 2.5e-103 380.6 677 40.2
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 5.5e-103 379.4 587 43.1
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 7.1e-103 379.0 594 41.6
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 9.3e-103 378.6 656 41.2
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 1.2e-102 378.3 747 36.8
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 2.7e-102 377.1 726 39.7
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 2.3e-101 374.0 669 39.0
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.0e-101 373.6 636 41.7
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.5e-100 371.3 643 39.7
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 4.8e-99 366.3 542 42.6
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 4.5e-97 359.8 628 40.4
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 5.0e-96 356.3 614 41.9
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 1.4e-93 348.2 684 36.4
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 2.3e-93 347.4 621 38.0
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 2.3e-93 347.4 747 35.7
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 1.9e-92 344.4 649 40.1
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 2.2e-91 340.9 679 37.0
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 1.1e-90 338.6 455 49.0
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 1.5e-89 334.7 713 34.4
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 5.0e-88 329.7 869 32.8
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 6.5e-88 329.3 456 47.1
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.2e-81 308.5 269 58.4
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 1.0e-77 295.4 742 33.0
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 1.5e-76 291.6 555 38.0
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.5e-76 291.6 189 72.5
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 9.7e-76 288.9 440 44.3
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.1e-74 285.4 234 61.1
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 1.3e-72 278.5 444 43.9
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 8.0e-70 269.2 256 57.4
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 3.7e-67 260.4 543 36.3
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 7.0e-66 256.1 565 34.7
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 3.5e-65 253.8 641 33.2
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.5e-65 253.4 543 35.9
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 2.2e-64 251.1 213 59.6
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.2e-62 245.4 543 33.1
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 9.1e-58 229.2 754 28.9
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 1.3e-56 225.3 199 60.3
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.0e-48 199.1 174 60.3
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 6.6e-48 196.4 192 55.7
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 5.8e-44 183.3 216 50.0
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 1.9e-42 178.3 198 52.5
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 3.2e-42 177.6 196 45.9
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 3.0e-32 144.4 140 56.4
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 2.1e-30 138.3 241 41.9
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 1.4e-29 135.6 233 39.1
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 5.4e-26 123.6 201 38.8
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 6.0e-25 120.2 215 40.5
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 6.0e-25 120.2 215 40.5
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 2.3e-24 118.2 227 37.9
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-21 108.6 135 51.1
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 2.9e-19 101.3 141 41.1
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 7.8e-17 93.2 59 71.2
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 1.0e-16 92.8 344 29.9
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 1.7e-16 92.0 127 41.7
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 9.6e-15 86.3 91 52.7
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 8.1e-14 83.2 81 53.1
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 1.8e-13 82.0 152 36.8
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 1.2e-12 79.3 107 43.0
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.2e-09 69.3 83 37.3
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 2.7e-09 68.2 48 68.8
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 4.6e-09 67.4 105 41.0
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 7.8e-09 66.6 76 50.0
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 3.0e-08 64.7 56 60.7
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 1.1e-07 62.8 186 28.0
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 1.5e-07 62.4 49 63.3
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.5e-07 62.4 102 40.2
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.5e-07 62.4 102 40.2
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 5.6e-07 60.5 67 47.8
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 1.3e-06 59.3 125 32.0
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 2.1e-06 58.5 140 30.7
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 2.1e-06 58.5 121 33.1
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 2.1e-06 58.5 120 31.7
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 2.8e-06 58.2 160 26.9
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 3.6e-06 57.8 172 29.7
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 8.1e-06 56.6 137 29.9
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 8.1e-06 56.6 174 24.1


User provided reference genes

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