Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 2.4e-66 255.4 131 100.0
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 2.1e-62 242.3 131 95.4
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 4.7e-62 241.1 132 94.7
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 5.2e-61 237.7 132 93.9
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 2.6e-60 235.3 131 93.1
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 8.3e-59 230.3 132 89.4
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 5.4e-58 227.6 132 88.6
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 9.2e-58 226.9 131 87.8
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 7.8e-57 223.8 131 84.0
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 3.9e-56 221.5 131 83.2
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 6.6e-56 220.7 131 81.7
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 6.6e-56 220.7 131 81.7
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 6.6e-56 220.7 131 81.7
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.1e-55 219.9 131 87.8
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 4.3e-55 218.0 133 83.5
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 2.8e-54 215.3 131 81.7
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 6.2e-54 214.2 131 81.7
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 8.1e-54 213.8 131 80.9
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 8.1e-54 213.8 131 80.9
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.3e-53 212.2 131 79.4
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 2.3e-53 212.2 131 80.9
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.3e-53 212.2 131 80.2
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 4.0e-53 211.5 131 82.4
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 4.0e-53 211.5 133 81.2
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.0e-53 211.5 131 79.4
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 4.0e-53 211.5 131 80.2
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 5.2e-53 211.1 131 79.4
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 5.2e-53 211.1 131 80.2
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 6.8e-53 210.7 131 79.4
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 6.8e-53 210.7 134 80.6
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 6.8e-53 210.7 133 80.5
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 8.9e-53 210.3 131 77.9
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 1.2e-52 209.9 130 79.2
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 1.5e-52 209.5 131 78.6
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 1.5e-52 209.5 131 77.1
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 1.5e-52 209.5 132 78.0
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 2.0e-52 209.1 131 79.4
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 2.0e-52 209.1 131 78.6
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 2.6e-52 208.8 131 78.6
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.6e-52 208.8 131 77.9
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 3.4e-52 208.4 132 78.0
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 3.4e-52 208.4 131 80.9
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 4.4e-52 208.0 133 78.9
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.4e-52 208.0 131 77.9
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 4.4e-52 208.0 131 79.4
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 4.4e-52 208.0 134 75.4
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 5.8e-52 207.6 131 79.4
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 9.9e-52 206.8 133 78.9
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 9.9e-52 206.8 131 78.6
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 9.9e-52 206.8 131 78.6
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 1.3e-51 206.5 133 78.9
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 1.3e-51 206.5 131 77.1
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 1.3e-51 206.5 131 75.6
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 1.7e-51 206.1 133 78.2
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.7e-51 206.1 131 79.4
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.7e-51 206.1 130 79.2
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 1.7e-51 206.1 131 80.2
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 2.2e-51 205.7 130 77.7
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 2.2e-51 205.7 134 78.4
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 2.2e-51 205.7 131 77.1
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.2e-51 205.7 132 77.3
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 2.2e-51 205.7 131 80.9
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 3.7e-51 204.9 131 80.9
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 4.9e-51 204.5 134 76.9
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 6.4e-51 204.1 131 77.9
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 8.4e-51 203.8 133 77.4
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 8.4e-51 203.8 133 76.7
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 8.4e-51 203.8 133 76.7
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 8.4e-51 203.8 133 77.4
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 1.1e-50 203.4 133 76.7
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 1.1e-50 203.4 133 78.2
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 1.1e-50 203.4 131 77.1
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 1.1e-50 203.4 131 77.9
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 1.4e-50 203.0 133 76.7
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.4e-50 203.0 131 74.8
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.9e-50 202.6 134 76.1
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.9e-50 202.6 132 77.3
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 1.9e-50 202.6 131 77.1
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 2.4e-50 202.2 131 75.6
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 2.4e-50 202.2 131 77.1
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 3.2e-50 201.8 133 75.9
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 3.2e-50 201.8 131 73.3
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 3.2e-50 201.8 131 77.9
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 4.1e-50 201.4 127 78.7
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 4.1e-50 201.4 133 76.7
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 4.1e-50 201.4 131 75.6
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 5.4e-50 201.1 134 76.1
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 5.4e-50 201.1 134 75.4
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 7.1e-50 200.7 134 75.4
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 7.1e-50 200.7 134 75.4
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 7.1e-50 200.7 134 75.4
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 7.1e-50 200.7 131 75.6
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 9.2e-50 200.3 134 74.6
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 1.2e-49 199.9 131 77.9
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 2.1e-49 199.1 131 73.3
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 2.1e-49 199.1 131 73.3
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 3.5e-49 198.4 132 75.8
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 3.5e-49 198.4 131 74.0
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 4.6e-49 198.0 131 76.3
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 4.6e-49 198.0 132 75.8
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 4.6e-49 198.0 132 75.8
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 4.6e-49 198.0 133 77.4
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 4.6e-49 198.0 127 75.6
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 7.8e-49 197.2 131 74.0
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 7.8e-49 197.2 131 74.0
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 1.3e-48 196.4 131 72.5
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.3e-48 196.4 131 72.5
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.3e-48 196.4 132 74.2
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 3.9e-48 194.9 131 72.5
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 3.9e-48 194.9 131 72.5
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 5.1e-48 194.5 131 71.8
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 6.6e-48 194.1 124 75.0
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 6.6e-48 194.1 131 74.0
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 8.6e-48 193.7 123 78.0
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 8.6e-48 193.7 131 72.5
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 1.9e-47 192.6 131 72.5
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 2.5e-47 192.2 131 74.8
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 4.3e-47 191.4 146 71.2
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 5.6e-47 191.0 131 72.5
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 7.3e-47 190.7 133 73.7
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 7.3e-47 190.7 131 73.3
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 9.6e-47 190.3 131 70.2
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 2.8e-46 188.7 118 78.0
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 3.6e-46 188.3 131 71.0
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 4.7e-46 188.0 128 76.6
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 4.7e-46 188.0 131 71.0
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 8.1e-46 187.2 119 77.3
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 1.1e-45 186.8 115 78.3
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 1.1e-45 186.8 115 78.3
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 4.0e-45 184.9 131 67.9
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 1.2e-44 183.3 128 72.7
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 2.6e-44 182.2 131 65.6
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 2.6e-44 182.2 125 75.2
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 4.4e-44 181.4 123 73.2
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 4.4e-44 181.4 120 70.0
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 5.8e-44 181.0 131 66.4
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.3e-43 179.9 120 75.8
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 2.9e-43 178.7 131 64.1
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 8.4e-43 177.2 139 69.8
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 1.1e-42 176.8 104 77.9
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 9.3e-42 173.7 131 64.9
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 1.6e-41 172.9 131 64.9
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 6.6e-40 167.5 131 64.1
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 1.9e-39 166.0 131 60.3
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 1.6e-38 162.9 140 61.4
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 6.9e-37 157.5 91 81.3
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 9.0e-37 157.1 113 67.3
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 2.0e-36 156.0 131 56.5
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 1.2e-33 146.7 130 59.2
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 2.4e-29 132.5 120 51.7
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.4e-26 123.2 85 74.1
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 2.4e-26 122.5 78 71.8
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 3.5e-25 118.6 78 75.6
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.9e-23 112.8 77 71.4
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 2.8e-22 109.0 80 71.2
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 3.4e-20 102.1 76 68.4
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 2.2e-19 99.4 76 64.5
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.9e-18 96.3 60 80.0
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 2.5e-18 95.9 56 80.4
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.0e-16 90.5 77 57.1
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 4.1e-13 78.6 50 74.0
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 1.1e-10 70.5 96 39.6
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 3.9e-08 62.0 63 50.8
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 3.3e-07 58.9 42 66.7


User provided reference genes

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