Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G57340 Arabidopsis thaliana HOM05D010683 ORTHO05D008293 1.2e-112 410.2 257 100.0
AL8G33310 Arabidopsis lyrata HOM05D010683 ORTHO05D008293 1.2e-88 330.5 243 92.2
Carub.0008s1785 Capsella rubella HOM05D010683 ORTHO05D008293 1.8e-81 306.6 244 86.1
Thhalv10014550m.g Eutrema salsugineum HOM05D010683 ORTHO05D008293 7.5e-80 301.2 242 83.5
Sp6g19060 Schrenkiella parvula HOM05D010683 ORTHO05D008293 1.9e-78 296.6 240 83.3
CARHR271130 Cardamine hirsuta HOM05D010683 ORTHO05D008293 1.2e-77 293.9 241 81.3
A02p08580 Brassica napus HOM05D010683 ORTHO05D008293 1.2e-72 277.3 239 73.6
BraA02t05927Z Brassica rapa HOM05D010683 ORTHO05D008293 1.2e-72 277.3 239 73.6
BcaB08g36093 Brassica carinata HOM05D010683 ORTHO05D008293 2.4e-70 269.6 242 74.4
BcaC04g19976 Brassica carinata HOM05D010683 ORTHO05D008293 1.6e-53 213.8 185 69.2
C09p49230 Brassica napus HOM05D010683 ORTHO05D008293 1.6e-53 213.8 185 69.2
BolC9t57773H Brassica oleracea HOM05D010683 ORTHO05D008293 1.6e-53 213.8 185 69.2
A10p14800 Brassica napus HOM05D010683 ORTHO05D008293 2.7e-53 213.0 185 70.8
BcaC03g14162 Brassica carinata HOM05D010683 ORTHO05D008293 2.6e-48 196.4 186 76.3
C02p14330 Brassica napus HOM05D010683 ORTHO05D008293 4.9e-47 192.2 186 75.3
BolC2t07559H Brassica oleracea HOM05D010683 ORTHO05D008293 4.9e-47 192.2 186 75.3
BcaB05g22338 Brassica carinata HOM05D010683 ORTHO05D008293 4.3e-43 179.1 184 73.4
Aa31LG3G13210 Aethionema arabicum HOM05D010683 ORTHO05D008293 1.3e-42 177.6 243 63.4
THA.LOC104811782 Tarenaya hassleriana HOM05D007665 ORTHO05D008293 2.5e-27 126.7 277 47.3
THA.LOC104813513 Tarenaya hassleriana HOM05D007665 ORTHO05D008293 2.8e-18 96.7 229 48.9
COL.COLO4_35626 Corchorus olitorius HOM05D007665 ORTHO05D008293 6.9e-17 92.0 315 30.2
Thecc.09G178300 Theobroma cacao HOM05D007665 ORTHO05D008293 4.5e-16 89.4 278 30.9
Dinv19563 Davidia involucrata HOM05D007665 ORTHO05D008293 1.7e-15 87.4 231 32.9
Cpa.g.c26900 Carica papaya HOM05D007665 ORTHO05D008293 8.5e-15 85.1 265 32.5
Duzib150G0483 Durio zibethinus HOM05D007665 ORTHO05D008293 1.4e-14 84.3 250 32.0
Sabra06G0127300 Salix brachista HOM05D007665 ORTHO05D008293 1.4e-14 84.3 314 28.7
Potri.018G090000 Populus trichocarpa HOM05D007665 ORTHO05D008293 7.2e-14 82.0 250 30.8
Medtr2g036740 Medicago truncatula HOM05D007665 ORTHO05D008293 9.4e-14 81.6 216 31.9
Manes.06G022200 Manihot esculenta HOM05D007665 ORTHO05D008293 1.2e-13 81.3 247 30.0
TWI34G1272 Tripterygium wilfordii HOM05D007665 ORTHO05D008293 1.2e-13 81.3 284 29.6
Gohir.D08G093300 Gossypium hirsutum HOM05D007665 ORTHO05D008293 1.6e-13 80.9 266 31.2
QL11p005089 Quercus lobata HOM05D007665 ORTHO05D008293 1.6e-13 80.9 276 30.4
Atru.chr7.835 Acer truncatum HOM05D007665 ORTHO05D008293 7.9e-13 78.6 229 32.8
TPR.G9242 Trifolium pratense HOM05D007665 ORTHO05D008293 1.4e-12 77.8 244 29.9
TPR.G5363 Trifolium pratense HOM05D007665 ORTHO05D008293 3.9e-12 76.3 214 34.6
CiPaw.08G034700 Carya illinoinensis HOM05D007665 ORTHO05D008293 2.6e-11 73.6 246 29.3
Gohir.A08G083600 Gossypium hirsutum HOM05D007665 ORTHO05D008293 4.4e-11 72.8 261 29.5
Manes.14G158020 Manihot esculenta HOM05D007665 ORTHO05D008293 4.4e-11 72.8 236 31.4
Ciclev10009102m.g Citrus clementina HOM05D007665 ORTHO05D008293 7.4e-11 72.0 255 30.2
TWI32G1073 Tripterygium wilfordii HOM05D007665 ORTHO05D008293 9.7e-11 71.6 253 29.2
Potri.006G165500 Populus trichocarpa HOM05D007665 ORTHO05D008293 1.3e-10 71.2 224 27.2
GSVIVG01029234001 Vitis vinifera HOM05D007665 ORTHO05D008293 2.2e-10 70.5 144 37.5
Sed0009111 Sechium edule HOM05D007665 ORTHO05D008293 6.3e-10 68.9 211 29.4
A10p14790 Brassica napus HOM05D010683 ORTHO05D042218 8.2e-10 68.6 54 64.8
Cfa013407 Carpinus fangiana HOM05D007665 ORTHO05D008293 8.2e-10 68.6 239 29.3
VMungo1309G2535 Vigna mungo HOM05D007665 ORTHO05D008293 8.2e-10 68.6 117 42.7
BraA10t43559Z Brassica rapa HOM05D010683 ORTHO05D042218 1.1e-09 68.2 51 68.6
Gorai.004G098900 Gossypium raimondii HOM05D007665 ORTHO05D008293 1.8e-09 67.4 266 29.3
Gorai.009G003800 Gossypium raimondii HOM05D007665 ORTHO05D008293 2.4e-09 67.0 126 37.3
Psat1g146200 Pisum sativum HOM05D007665 ORTHO05D008293 5.3e-09 65.9 57 56.1
FAN12G1950 Fragaria x ananassa HOM05D007665 ORTHO05D008293 7.0e-09 65.5 327 25.1
FAN17G2593 Fragaria x ananassa HOM05D007665 ORTHO05D008293 7.0e-09 65.5 268 26.1
Medtr4g127680 Medicago truncatula HOM05D007665 ORTHO05D008293 7.0e-09 65.5 123 41.5
MELO3C017449.2 Cucumis melo HOM05D007665 ORTHO05D008293 9.1e-09 65.1 254 26.0
CsaV3_1G031740 Cucumis sativus L. HOM05D007665 ORTHO05D008293 9.1e-09 65.1 254 26.0
Gohir.A05G003700 Gossypium hirsutum HOM05D007665 ORTHO05D008293 9.1e-09 65.1 132 36.4
CiPaw.07G194500 Carya illinoinensis HOM05D007665 ORTHO05D008293 1.2e-08 64.7 262 28.2
Ca_21241_v3 Cicer arietinum L. HOM05D007665 ORTHO05D008293 1.2e-08 64.7 149 34.9
arahy.Tifrunner.gnm1.ann1.6P3KM7 Arachis hypogaea HOM05D007665 ORTHO05D008293 1.6e-08 64.3 85 48.2
Prupe.1G081700 Prunus persica HOM05D007665 ORTHO05D008293 1.6e-08 64.3 164 33.5
FAN07G1410 Fragaria x ananassa HOM05D007665 ORTHO05D008293 2.0e-08 63.9 327 25.4
Phvul.009G238500 Phaseolus vulgaris HOM05D007665 ORTHO05D008293 2.0e-08 63.9 164 35.4
arahy.Tifrunner.gnm1.ann1.D7NBKG Arachis hypogaea HOM05D007665 ORTHO05D008293 3.5e-08 63.2 85 48.2
Glyma.09G056900 Glycine max HOM05D007665 ORTHO05D008293 3.5e-08 63.2 169 34.3
Glyma.17G061500 Glycine max HOM05D007665 ORTHO05D008293 3.5e-08 63.2 229 27.1
Phvul.003G143500 Phaseolus vulgaris HOM05D007665 ORTHO05D008293 3.5e-08 63.2 60 55.0
Haze_21953 Corylus avellana HOM05D007665 ORTHO05D008293 4.5e-08 62.8 103 40.8
Glyma.13G098200 Glycine max HOM05D007665 ORTHO05D008293 4.5e-08 62.8 227 26.4
PGR142G3274 Punica granatum HOM05D007665 ORTHO05D008293 4.5e-08 62.8 140 37.1
Lj6g0002099 Lotus japonicus HOM05D007665 ORTHO05D008293 5.9e-08 62.4 56 55.4
ClCG06G013480 Citrullus lanatus HOM05D007665 ORTHO05D008293 7.7e-08 62.0 260 25.4
Gohir.D05G004100 Gossypium hirsutum HOM05D007665 ORTHO05D008293 7.7e-08 62.0 121 36.4
Hma1.2p1_1303F.1_g274400 Hydrangea macrophylla HOM05D007665 ORTHO05D008293 7.7e-08 62.0 251 30.3
MD13G1247000 Malus domestica HOM05D007665 ORTHO05D008293 7.7e-08 62.0 106 38.7
RcHm_v2.0_Chr4g0400841 Rosa chinensis HOM05D007665 ORTHO05D008293 1.0e-07 61.6 170 30.6
Glyma.15G163200 Glycine max HOM05D007665 ORTHO05D008293 1.3e-07 61.2 161 34.8
Lsat_1_v5_gn_5_85601 Lactuca sativa HOM05D007665 ORTHO05D008293 1.3e-07 61.2 185 30.3
Psat0s2178g0120 Pisum sativum HOM05D007665 ORTHO05D008293 1.7e-07 60.8 113 41.6
VMungo1215G3214 Vigna mungo HOM05D007665 ORTHO05D008293 2.2e-07 60.5 60 53.3
Actinidia01304 Actinidia chinensis HOM05D007665 ORTHO05D008293 3.8e-07 59.7 85 44.7
MD16G1253900 Malus domestica HOM05D007665 ORTHO05D008293 5.0e-07 59.3 173 31.8
TAR625G0485 Trochodendron aralioides HOM05D007665 ORTHO05D008293 5.0e-07 59.3 269 24.5
Aqoxy7G02985 Aquilegia oxysepala HOM05D007665 ORTHO05D008293 6.5e-07 58.9 89 43.8
CANSAT11G1651 Cannabis sativa HOM05D007665 ORTHO05D008293 6.5e-07 58.9 106 44.3
Lalb_Chr18g0052461 Lupinus albus HOM05D007665 ORTHO05D008293 8.5e-07 58.5 115 40.9
MBI16_g38083_MAGBIO Magnolia biondii HOM05D007665 ORTHO05D008293 8.5e-07 58.5 70 48.6
Rhsim01G0002100 Rhododendron simsii HOM05D007665 ORTHO05D008293 8.5e-07 58.5 287 24.4
arahy.Tifrunner.gnm1.ann1.38WMVK Arachis hypogaea HOM05D007665 ORTHO05D008293 1.1e-06 58.2 46 63.0
arahy.Tifrunner.gnm1.ann1.HIJU8F Arachis hypogaea HOM05D007665 ORTHO05D008293 1.1e-06 58.2 46 63.0
FvH4_4g07760 Fragaria vesca HOM05D007665 ORTHO05D008293 1.5e-06 57.8 168 30.4
Gorai.004G027000 Gossypium raimondii HOM05D007665 ORTHO05D008293 1.9e-06 57.4 135 35.6
Lj4g0023476 Lotus japonicus HOM05D007665 ORTHO05D008293 3.2e-06 56.6 95 43.2
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 4.2e-06 56.2 189 27.0
Lalb_Chr15g0084041 Lupinus albus HOM05D007665 ORTHO05D008293 5.5e-06 55.8 57 56.1
Sed0009659 Sechium edule HOM05D007665 ORTHO05D008293 5.5e-06 55.8 247 24.3
MSTRG.6233 Avicennia marina HOM05D007665 ORTHO05D008293 9.4e-06 55.1 222 27.9


User provided reference genes

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