Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 0.0e+00 1203.7 729 100.0
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 0.0e+00 1177.9 729 96.6
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 0.0e+00 1128.6 729 94.0
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 0.0e+00 1124.8 729 91.4
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 0.0e+00 1122.5 729 94.2
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 0.0e+00 1114.0 731 92.2
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 0.0e+00 1109.4 731 92.7
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 0.0e+00 1105.1 730 92.5
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 0.0e+00 1092.4 731 91.5
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 0.0e+00 1091.6 731 89.7
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 0.0e+00 1091.6 733 91.8
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 0.0e+00 1085.9 732 90.7
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 0.0e+00 1085.9 767 84.9
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 5.0e-312 1074.3 757 84.8
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 2.9e-310 1068.1 732 90.8
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 2.7e-308 1061.6 758 77.8
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 1.4e-304 1049.3 732 89.3
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 4.3e-290 1001.1 732 82.1
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 1.1e-282 976.5 733 82.3
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 2.1e-276 955.7 766 79.5
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 7.0e-248 860.9 746 71.4
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 7.8e-239 830.9 749 69.4
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 2.3e-238 829.3 751 69.5
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 2.5e-237 825.9 745 70.5
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.0e-234 816.2 746 72.4
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 3.4e-234 815.5 737 70.4
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.8e-234 814.7 746 72.3
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 7.5e-234 814.3 747 70.4
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 7.5e-234 814.3 747 70.4
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.3e-233 813.5 747 72.3
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 1.7e-233 813.1 747 68.7
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.7e-233 812.0 747 72.2
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 4.6e-231 805.1 765 67.7
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 7.8e-231 804.3 748 69.4
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.3e-230 803.5 750 67.9
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 2.3e-230 802.7 640 65.2
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 2.3e-230 802.7 772 67.4
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 1.1e-229 800.4 758 69.0
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 2.5e-229 799.3 750 68.3
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 7.3e-229 797.7 794 55.0
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 6.2e-228 794.7 629 66.9
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 1.1e-227 793.9 753 68.0
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 3.1e-227 792.3 741 68.8
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 2.6e-226 789.3 757 67.6
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 6.4e-225 784.6 759 68.5
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 8.3e-225 784.3 773 66.4
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 3.2e-224 782.3 744 67.3
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 3.2e-224 782.3 743 68.2
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 1.6e-223 780.0 738 67.2
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 7.8e-223 777.7 756 66.7
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 7.8e-223 777.7 742 67.9
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 1.0e-222 777.3 758 66.5
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 3.0e-222 775.8 745 67.5
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.9e-221 773.1 751 67.5
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 2.5e-221 772.7 744 67.2
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 3.3e-221 772.3 759 67.3
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 4.3e-221 771.9 740 67.2
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 5.6e-221 771.5 751 67.4
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 1.2e-220 770.4 764 67.0
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 2.8e-220 769.2 740 67.3
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 4.7e-220 768.5 766 65.1
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 6.2e-220 768.1 744 69.0
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 8.1e-220 767.7 752 67.6
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.8e-219 766.5 752 67.4
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 2.3e-219 766.1 766 65.0
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 6.8e-219 764.6 739 68.1
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 8.9e-219 764.2 764 67.1
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 4.4e-218 761.9 749 66.2
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 5.8e-218 761.5 748 67.2
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 7.6e-218 761.1 743 66.6
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 2.2e-217 759.6 784 63.8
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 6.4e-217 758.1 775 65.4
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 1.9e-216 756.5 753 66.0
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 2.4e-216 756.1 823 61.4
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 5.4e-216 755.0 758 64.8
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 9.2e-216 754.2 749 68.6
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 9.2e-216 754.2 749 68.8
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 9.2e-216 754.2 751 68.3
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 2.1e-215 753.1 777 63.8
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 7.8e-215 751.1 751 68.8
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 1.3e-214 750.4 751 68.7
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 1.6e-212 743.4 736 64.3
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 1.4e-211 740.3 752 66.9
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.8e-211 740.0 747 67.2
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 4.0e-211 738.8 752 65.8
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 1.2e-210 737.3 843 60.0
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 4.4e-210 735.3 757 64.7
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 5.4e-208 728.4 760 65.5
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.6e-207 726.9 784 53.3
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 6.0e-207 724.9 788 55.1
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 1.3e-206 723.8 759 65.5
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 5.1e-206 721.8 741 66.9
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 1.3e-204 717.2 838 61.2
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 2.1e-204 716.5 639 62.3
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 6.4e-201 704.9 773 62.1
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 3.2e-200 702.6 745 64.2
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 4.2e-200 702.2 682 68.2
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 6.0e-199 698.4 749 62.8
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 1.0e-198 697.6 738 65.9
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.1e-197 694.1 788 60.5
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 6.9e-187 658.3 788 58.8
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 1.1e-184 651.0 806 59.8
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 6.7e-182 641.7 751 61.9
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 3.2e-176 622.9 745 59.5
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.1e-173 614.4 770 47.7
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 1.8e-171 607.1 562 62.3
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 5.5e-160 568.9 1241 42.2
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 1.1e-157 561.2 723 58.4
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 1.5e-157 560.8 775 55.6
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.2e-153 547.0 545 67.5
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 1.2e-151 541.2 766 54.2
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 1.3e-148 531.2 760 55.3
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 2.8e-148 530.0 753 56.0
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 1.0e-142 511.5 753 55.1
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 1.1e-136 491.5 752 54.4
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.5e-136 490.3 451 58.8
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.4e-117 426.8 438 53.7
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 3.7e-116 423.3 454 52.6
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 3.4e-109 400.2 604 44.4
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.6e-101 374.0 385 53.5
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 8.9e-94 349.0 311 83.0
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 2.6e-93 347.4 482 46.9
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.3e-92 345.1 340 78.2
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 7.1e-91 339.3 319 82.1
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 7.3e-88 329.3 304 83.2
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 9.6e-88 328.9 384 50.0
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 1.2e-77 295.4 476 42.4
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 3.4e-77 293.9 330 51.5
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 6.4e-76 289.7 198 67.2
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 2.5e-72 277.7 738 32.9
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 4.6e-66 256.9 851 39.0
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.4e-56 223.0 126 86.5
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 1.1e-54 219.2 694 30.4
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.0e-45 188.3 181 57.5
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.7e-40 170.2 98 85.7
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.8e-39 167.9 90 88.9
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 2.2e-36 158.3 98 76.5
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.8e-31 141.4 226 39.8
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.8e-30 138.7 84 82.1
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 2.4e-30 138.3 93 79.6
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 2.4e-30 138.3 233 39.9
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.1e-30 137.5 76 88.2
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.3e-30 137.1 226 39.8
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 5.0e-28 130.6 166 49.4
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.9e-27 128.6 68 88.2
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.6e-26 124.4 102 62.7
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.1e-26 123.6 66 84.8
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 4.4e-24 117.5 136 58.1
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 7.5e-24 116.7 141 49.6
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.7e-23 114.4 70 78.6
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 4.1e-22 110.9 155 48.4
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.1e-22 109.8 61 83.6
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-21 109.4 61 83.6
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.5e-21 107.8 60 85.0
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 1.1e-19 102.8 155 91.0
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 2.5e-19 101.7 117 55.6
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 6.1e-18 97.1 146 41.1
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.0e-17 96.3 115 51.3
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 2.3e-17 95.1 103 53.4
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 7.5e-16 90.1 154 85.1
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 3.1e-14 84.7 182 34.6
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.3e-12 78.6 60 70.0
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 1.6e-10 72.4 105 45.7
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 3.0e-09 68.2 109 40.4
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 6.8e-09 67.0 186 29.0
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 2.0e-08 65.5 31 96.8
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 3.4e-08 64.7 41 73.2
A02p09200 Brassica napus HOM05D061471 ORTHO05D041986 4.1e-06 57.8 30 86.7
BraA02t05987Z Brassica rapa HOM05D061471 ORTHO05D041986 4.1e-06 57.8 30 86.7
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 4.1e-06 57.8 31 80.6
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 7.0e-06 57.0 30 83.3
Gohir.A10G243600 Gossypium hirsutum HOM05D004098 ORTHO05D005454 7.0e-06 57.0 25 96.0
Hma1.2p1_1190F.1_g265410 Hydrangea macrophylla HOM05D001237 ORTHO05D001827 9.2e-06 56.6 57 49.1


User provided reference genes

Program Settings