Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 2531.9 1260 100.0
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 2461.4 1260 96.7
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 2434.1 1260 95.9
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 2410.9 1262 94.9
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 2392.5 1259 94.5
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 2369.3 1262 93.1
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 2367.4 1261 93.1
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 2364.7 1261 92.8
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 2362.8 1261 92.7
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 2362.4 1267 92.5
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 2358.9 1262 92.9
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 2355.1 1260 92.5
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 2350.5 1261 92.4
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 2347.4 1262 92.3
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 2347.0 1259 92.3
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 2340.8 1264 92.2
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 2340.5 1262 92.2
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 2339.7 1261 92.1
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 2188.3 1261 85.6
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 2028.4 1032 97.9
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1994.2 1266 77.5
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1991.1 1258 77.9
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1972.6 1261 77.1
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1970.3 1261 77.1
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1967.2 1259 77.3
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1953.3 1259 76.4
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1950.6 1261 76.4
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1946.4 1258 76.2
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1944.1 1259 76.1
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1943.7 1266 76.0
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1943.3 1265 76.0
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1942.2 1258 76.1
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1940.2 1260 76.3
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1940.2 1260 76.2
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1937.9 1263 75.8
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1936.8 1261 76.3
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1935.2 1260 75.6
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1931.4 1260 75.2
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1924.1 1300 73.8
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1923.3 1259 76.5
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1922.1 1260 75.7
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1919.8 1257 75.0
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1918.7 1258 75.5
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1913.7 1260 76.0
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1911.7 1274 75.0
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1908.6 1258 74.9
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1905.6 1260 74.6
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1903.6 1260 75.1
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1899.8 1258 74.9
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1899.8 1258 74.8
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1899.0 1259 74.5
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1897.9 1262 74.9
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1896.7 1258 74.8
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1895.2 1259 74.4
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1895.2 1252 74.4
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1890.9 1258 74.8
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1879.0 1261 73.3
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1876.7 1266 72.4
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1876.3 1288 71.7
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1875.5 1259 73.6
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1869.0 1259 72.8
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1867.4 1277 73.0
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1865.9 1264 73.2
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1864.0 1259 73.6
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1857.4 1285 72.2
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1854.0 1261 72.9
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1851.3 1261 72.7
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1848.2 1262 72.9
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1845.9 1260 73.2
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1844.3 1261 71.8
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1843.6 1260 72.6
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1843.6 1260 72.6
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1843.2 1280 71.2
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1842.4 1265 73.0
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1839.7 1246 73.2
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1838.9 1326 70.0
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1838.9 1265 72.4
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1838.5 1269 71.8
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1838.5 1262 72.3
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1837.8 1259 73.0
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1837.4 1242 73.8
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1818.5 1518 62.7
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1818.1 1259 72.0
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1813.1 1267 71.2
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1801.9 1245 72.4
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1781.5 1257 71.0
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1758.0 1243 71.0
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1756.9 1324 67.7
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1751.5 1275 70.3
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1734.5 1165 73.8
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1731.8 1165 73.7
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1703.0 1260 66.8
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1679.5 1255 66.9
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1593.6 1074 73.0
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1567.7 1104 71.0
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1555.4 1007 77.1
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1546.9 1047 74.3
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1546.2 1233 62.7
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1540.0 1035 74.4
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1527.7 1265 60.9
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1477.2 1061 69.6
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1435.6 1093 68.0
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1378.6 856 79.4
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1376.7 1015 68.0
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1375.1 930 73.3
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1281.5 1393 49.9
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1171.4 1359 47.8
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1168.7 1262 52.6
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1104.7 747 71.9
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1103.6 775 70.3
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 9.4e-301 1037.3 865 61.3
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 1.9e-285 986.5 1015 54.2
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 1.3e-281 973.8 1155 45.8
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 1.5e-261 907.1 592 76.5
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 1.2e-247 860.9 842 55.7
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.1e-243 847.8 538 77.0
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 7.9e-207 725.3 445 79.6
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 1.3e-204 718.0 1435 33.7
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 6.6e-169 599.4 453 66.2
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.1e-158 565.5 488 60.0
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 2.8e-151 540.8 301 85.4
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 2.2e-116 424.9 314 66.6
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 3.0e-97 361.3 205 84.4
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 8.2e-95 353.2 189 92.1
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.4e-91 342.4 372 48.7
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 8.8e-89 333.2 194 80.4
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.7e-87 328.9 320 58.1
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 3.0e-81 308.1 260 58.8
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 5.3e-78 297.4 172 82.0
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.9e-76 291.6 203 73.4
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 2.7e-74 285.0 199 72.9
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 1.1e-70 273.1 159 85.5
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 4.1e-70 271.2 150 85.3
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 4.1e-70 271.2 263 55.1
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.7e-68 265.8 261 55.9
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 1.7e-68 265.8 261 55.9
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 1.7e-68 265.8 261 55.9
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 6.1e-66 257.3 451 35.9
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 1.1e-62 246.5 189 64.6
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 8.6e-60 236.9 148 79.1
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.8e-57 229.2 144 75.0
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.2e-50 206.5 138 71.0
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 3.6e-50 204.9 147 69.4
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 7.0e-46 190.7 143 61.5
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 4.3e-43 181.4 132 66.7
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.1e-41 176.8 108 75.9
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.5e-40 172.9 108 75.9
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 3.7e-39 168.3 108 74.1
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 3.7e-39 168.3 108 74.1
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 4.9e-39 167.9 149 55.7
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.4e-38 166.4 121 70.2
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.4e-38 166.4 98 79.6
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.4e-38 165.6 107 74.8
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.3e-35 155.2 98 81.6
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 3.6e-34 151.8 116 65.5
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 3.6e-34 151.8 102 72.5
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.0e-32 146.0 79 82.3
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.8e-26 125.6 87 66.7
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 1.4e-25 123.2 135 49.6
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 8.9e-25 120.6 65 80.0
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.1e-22 113.6 87 64.4
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 1.3e-20 106.7 114 52.6
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.3e-20 106.7 84 66.7
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 1.6e-18 99.8 119 42.0
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 6.9e-17 94.4 704 21.6
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 2.6e-16 92.4 62 71.0
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 8.4e-15 87.4 57 68.4
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.4e-14 85.9 52 69.2
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 3.2e-14 85.5 81 54.3
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 7.1e-14 84.3 376 24.2
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 6.6e-12 77.8 45 84.4
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 2.5e-11 75.9 116 40.5
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.1e-10 72.8 69 47.8
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 3.4e-08 65.5 52 61.5
ATR0693G070 Amborella trichopoda HOM05D004029 ORTHO05D004613 5.5e-06 58.2 46 65.2


User provided reference genes

Program Settings