Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G52770 Arabidopsis thaliana HOM05D000607 ORTHO05D010164 1.6e-47 192.6 112 100.0
AL8G27190 Arabidopsis lyrata HOM05D000607 ORTHO05D010164 8.8e-17 90.5 81 58.0
Carub.0008s1293 Capsella rubella HOM05D000607 ORTHO05D010164 4.4e-16 88.2 56 80.4
AL8G27200 Arabidopsis lyrata HOM05D000607 ORTHO05D010164 9.7e-16 87.0 48 91.7
Aa31LG3G9010 Aethionema arabicum HOM05D000607 ORTHO05D010164 8.2e-15 84.0 73 49.3
BcaB01g00906 Brassica carinata HOM05D000607 ORTHO05D010164 8.2e-15 84.0 76 68.4
BcaC03g14510 Brassica carinata HOM05D000607 ORTHO05D010164 8.2e-15 84.0 76 65.8
BcaC03g14511 Brassica carinata HOM05D000607 ORTHO05D010164 8.2e-15 84.0 76 68.4
C02p19470 Brassica napus HOM05D000607 ORTHO05D010164 1.1e-14 83.6 76 68.4
A02p11650 Brassica napus HOM05D000607 ORTHO05D010164 1.4e-14 83.2 56 67.9
CARHR265680 Cardamine hirsuta HOM05D000607 ORTHO05D010164 1.4e-14 83.2 77 53.2
BraA02t06228Z Brassica rapa HOM05D000607 ORTHO05D010164 4.1e-14 81.6 56 67.9
BcaB05g21977 Brassica carinata HOM05D000607 ORTHO05D010164 1.2e-13 80.1 73 50.7
C02p19460 Brassica napus HOM05D000607 ORTHO05D010164 1.2e-13 80.1 56 64.3
BolC2t08079H Brassica oleracea HOM05D000607 ORTHO05D010164 1.2e-13 80.1 56 64.3
BolC2t08080H Brassica oleracea HOM05D000607 ORTHO05D010164 1.2e-13 80.1 56 64.3
Aa31LG3G8990 Aethionema arabicum HOM05D000607 ORTHO05D010164 1.6e-13 79.7 99 40.4
BcaB05g21974 Brassica carinata HOM05D000607 ORTHO05D010164 1.6e-13 79.7 76 52.6
BcaC03g14506 Brassica carinata HOM05D000607 ORTHO05D010164 2.0e-13 79.3 77 67.5
Aa31LG3G8040 Aethionema arabicum HOM05D000607 ORTHO05D010164 2.7e-13 79.0 72 50.0
BcaB01g04211 Brassica carinata HOM05D000607 ORTHO05D010164 2.7e-13 79.0 60 60.0
BcaC03g14502 Brassica carinata HOM05D000607 ORTHO05D010164 2.7e-13 79.0 60 60.0
AL8G27180 Arabidopsis lyrata HOM05D000607 ORTHO05D010164 3.5e-13 78.6 52 73.1
Sp6g14870 Schrenkiella parvula HOM05D000607 ORTHO05D010164 4.5e-13 78.2 77 64.9
A02p11630 Brassica napus HOM05D000607 ORTHO05D010164 7.7e-13 77.4 60 58.3
BraA02t06224Z Brassica rapa HOM05D000607 ORTHO05D010164 7.7e-13 77.4 60 58.3
Aa31LG3G8050 Aethionema arabicum HOM05D000607 ORTHO05D010164 1.3e-12 76.6 53 64.2
AT5G52750 Arabidopsis thaliana HOM05D000607 ORTHO05D010164 1.3e-12 76.6 52 69.2
C02p19400 Brassica napus HOM05D000607 ORTHO05D010164 2.2e-12 75.9 60 58.3
C03p18170 Brassica napus HOM05D000607 ORTHO05D010164 3.8e-12 75.1 60 56.7
C03p18190 Brassica napus HOM05D000607 ORTHO05D010164 3.8e-12 75.1 60 56.7
BolC3t14218H Brassica oleracea HOM05D000607 ORTHO05D010164 3.8e-12 75.1 60 56.7
BolC3t14220H Brassica oleracea HOM05D000607 ORTHO05D010164 3.8e-12 75.1 60 56.7
A03p15560 Brassica napus HOM05D000607 ORTHO05D010164 5.0e-12 74.7 60 55.0
BraA03t10848Z Brassica rapa HOM05D000607 ORTHO05D010164 5.0e-12 74.7 60 55.0
AT5G52760 Arabidopsis thaliana HOM05D000607 ORTHO05D010164 6.5e-12 74.3 65 58.5
A02p11640 Brassica napus HOM05D000607 ORTHO05D010164 6.5e-12 74.3 77 48.1
Aa31LG3G8030 Aethionema arabicum HOM05D000607 ORTHO05D010164 8.5e-12 73.9 72 45.8
BcaC04g20551 Brassica carinata HOM05D000607 ORTHO05D010164 1.5e-11 73.2 52 65.4
A10p10240 Brassica napus HOM05D000607 ORTHO05D010164 1.5e-11 73.2 52 65.4
A10p10250 Brassica napus HOM05D000607 ORTHO05D010164 1.5e-11 73.2 52 65.4
C09p42230 Brassica napus HOM05D000607 ORTHO05D010164 1.5e-11 73.2 52 65.4
BolC9t57104H Brassica oleracea HOM05D000607 ORTHO05D010164 1.5e-11 73.2 52 65.4
BraA10t43103Z Brassica rapa HOM05D000607 ORTHO05D010164 1.5e-11 73.2 52 65.4
BcaB08g35624 Brassica carinata HOM05D000607 ORTHO05D010164 2.5e-11 72.4 52 65.4
BraA10t43102Z Brassica rapa HOM05D000607 ORTHO05D010164 3.2e-11 72.0 52 63.5
Thhalv10014994m.g Eutrema salsugineum HOM05D000607 ORTHO05D010164 3.2e-11 72.0 52 63.5
BcaC04g20552 Brassica carinata HOM05D000607 ORTHO05D010164 4.2e-11 71.6 52 63.5
C09p42220 Brassica napus HOM05D000607 ORTHO05D010164 4.2e-11 71.6 52 63.5
BolC9t57103H Brassica oleracea HOM05D000607 ORTHO05D010164 4.2e-11 71.6 52 63.5
Sp6g14880 Schrenkiella parvula HOM05D000607 ORTHO05D010164 4.2e-11 71.6 73 63.0
CARHR265710 Cardamine hirsuta HOM05D000607 ORTHO05D010164 5.5e-11 71.2 47 74.5
CARHR265700 Cardamine hirsuta HOM05D000607 ORTHO05D010164 1.6e-10 69.7 46 69.6
CARHR265690 Cardamine hirsuta HOM05D000607 ORTHO05D010164 4.7e-10 68.2 45 66.7
Carub.0008s1290 Capsella rubella HOM05D000607 ORTHO05D010164 6.1e-10 67.8 53 66.0
BraA10t43104Z Brassica rapa HOM05D000607 ORTHO05D010164 8.0e-10 67.4 41 70.7
Carub.0008s1292 Capsella rubella HOM05D000607 ORTHO05D010164 8.0e-10 67.4 53 66.0
Carub.0008s1289 Capsella rubella HOM05D000607 ORTHO05D010164 1.4e-09 66.6 52 67.3
Ciclev10006198m.g Citrus clementina HOM05D000607 ORTHO05D000518 1.4e-09 66.6 75 48.0
Sp6g14900 Schrenkiella parvula HOM05D000607 ORTHO05D010164 1.8e-09 66.2 53 60.4
Carub.0008s1291 Capsella rubella HOM05D000607 ORTHO05D010164 2.3e-09 65.9 53 64.2
Sp6g14910 Schrenkiella parvula HOM05D000607 ORTHO05D010164 4.0e-09 65.1 77 55.8
THA.LOC104811950 Tarenaya hassleriana HOM05D000607 ORTHO05D010164 5.2e-09 64.7 61 54.1
Thecc.03G185200 Theobroma cacao HOM05D000607 ORTHO05D000518 5.2e-09 64.7 63 49.2
Aa31LG3G8020 Aethionema arabicum HOM05D000607 ORTHO05D010164 6.8e-09 64.3 42 69.0
Sp6g09500 Schrenkiella parvula HOM05D000607 ORTHO05D010164 6.8e-09 64.3 48 66.7
Atru.chr1.346_Atru.chr1.347_Atru.chr1.348 Acer truncatum HOM05D000607 ORTHO05D000518 1.2e-08 63.5 62 56.5
Atru.chr1.349 Acer truncatum HOM05D000607 ORTHO05D000518 1.5e-08 63.2 61 57.4
C09p42340 Brassica napus HOM05D000607 ORTHO05D010164 2.0e-08 62.8 101 42.6
BolC2t08077H Brassica oleracea HOM05D000607 ORTHO05D010164 2.0e-08 62.8 49 59.2
BolC9t57113H Brassica oleracea HOM05D000607 ORTHO05D010164 2.0e-08 62.8 101 42.6
Cpa.g.sc107.117 Carica papaya HOM05D000607 ORTHO05D000518 2.0e-08 62.8 84 46.4
Potri.017G147500 Populus trichocarpa HOM05D000607 ORTHO05D000518 2.0e-08 62.8 60 53.3
Atru.ctg97_1.34 Acer truncatum HOM05D000607 ORTHO05D000518 2.6e-08 62.4 75 48.0
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 2.6e-08 62.4 75 44.0
THA.LOC104811951 Tarenaya hassleriana HOM05D000607 ORTHO05D000518 2.6e-08 62.4 60 55.0
Actinidia08584 Actinidia chinensis HOM05D000607 ORTHO05D000518 4.4e-08 61.6 60 51.7
COL.COLO4_30303 Corchorus olitorius HOM05D000607 ORTHO05D000518 4.4e-08 61.6 60 51.7
Potri.017G147400 Populus trichocarpa HOM05D000607 ORTHO05D000518 4.4e-08 61.6 80 42.5
C02p19420 Brassica napus HOM05D000607 ORTHO05D010164 7.5e-08 60.8 49 57.1
Duzib205G0003 Durio zibethinus HOM05D000607 ORTHO05D000518 7.5e-08 60.8 62 48.4
GSVIVG01028844001 Vitis vinifera HOM05D000607 ORTHO05D000518 7.5e-08 60.8 60 51.7
Actinidia34160 Actinidia chinensis HOM05D000607 ORTHO05D000518 9.8e-08 60.5 60 51.7
Oeu027869.1 Olea europaea HOM05D000607 ORTHO05D000518 9.8e-08 60.5 54 59.3
Cc02_g02320 Coffea canephora HOM05D000607 ORTHO05D000518 1.3e-07 60.1 53 60.4
Hma1.2p1_0327F.1_g126470 Hydrangea macrophylla HOM05D000607 ORTHO05D000518 1.3e-07 60.1 60 53.3
Carub.0008s1288 Capsella rubella HOM05D000607 ORTHO05D000518 1.7e-07 59.7 75 45.3
PSO478G2661 Papaver somniferum HOM05D000607 ORTHO05D000518 1.7e-07 59.7 60 50.0
PSO478G4469 Papaver somniferum HOM05D000607 ORTHO05D000518 1.7e-07 59.7 60 50.0
Potri.017G147000 Populus trichocarpa HOM05D000607 ORTHO05D000518 1.7e-07 59.7 62 51.6
Potri.017G147200 Populus trichocarpa HOM05D000607 ORTHO05D000518 1.7e-07 59.7 62 51.6
Atru.ctg97_1.33 Acer truncatum HOM05D000607 ORTHO05D000518 2.2e-07 59.3 54 63.0
Aa31LG3G9000 Aethionema arabicum HOM05D000607 ORTHO05D010164 2.2e-07 59.3 49 51.0
BcaC03g14503 Brassica carinata HOM05D000607 ORTHO05D010164 2.2e-07 59.3 49 55.1
Dinv35259 Davidia involucrata HOM05D000607 ORTHO05D000518 2.2e-07 59.3 60 51.7
PSO782G5558 Papaver somniferum HOM05D000607 ORTHO05D000518 2.2e-07 59.3 75 40.0
vmacro06623 Vaccinium macrocarpon HOM05D000607 ORTHO05D000518 2.2e-07 59.3 75 42.7
GSVIVG01028851001 Vitis vinifera HOM05D000607 ORTHO05D000518 2.2e-07 59.3 53 58.5
BcaC04g20541 Brassica carinata HOM05D000607 ORTHO05D010164 2.8e-07 58.9 66 47.0
CSS0006743 Camellia sinensis var. sinensis HOM05D001272 ORTHO05D009067 2.8e-07 58.9 60 46.7
CSS0048498 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 2.8e-07 58.9 60 46.7
Manes.06G153100 Manihot esculenta HOM05D000607 ORTHO05D000518 2.8e-07 58.9 62 50.0
Manes.14G021900 Manihot esculenta HOM05D000607 ORTHO05D000518 2.8e-07 58.9 62 50.0
PSO478G0459 Papaver somniferum HOM05D000607 ORTHO05D000518 2.8e-07 58.9 60 50.0
Potri.004G073100 Populus trichocarpa HOM05D000607 ORTHO05D000518 2.8e-07 58.9 62 51.6
THA.LOC104825116 Tarenaya hassleriana HOM05D000607 ORTHO05D010164 2.8e-07 58.9 54 55.6
Dinv28383 Davidia involucrata HOM05D000607 ORTHO05D000518 3.7e-07 58.5 60 50.0
HanXRQChr12g0381131 Helianthus annuus HOM05D000607 ORTHO05D000518 3.7e-07 58.5 60 50.0
Oeu036033.1 Olea europaea HOM05D000607 ORTHO05D000518 3.7e-07 58.5 54 55.6
PSO478G1713 Papaver somniferum HOM05D000607 ORTHO05D000518 3.7e-07 58.5 75 38.7
PSO782G1183 Papaver somniferum HOM05D000607 ORTHO05D000518 3.7e-07 58.5 60 46.7
PSO782G4438 Papaver somniferum HOM05D000607 ORTHO05D000518 3.7e-07 58.5 60 50.0
CANSAT21G0231 Cannabis sativa HOM05D000607 ORTHO05D000518 4.8e-07 58.2 54 57.4
Cpa.g.sc107.116 Carica papaya HOM05D000607 ORTHO05D000518 4.8e-07 58.2 62 50.0
Duzib205G0231 Durio zibethinus HOM05D000607 ORTHO05D000518 4.8e-07 58.2 60 48.3
PSO782G3455 Papaver somniferum HOM05D000607 ORTHO05D000518 4.8e-07 58.2 60 48.3
SGA_v2.0_scaffold44G16755 Striga asiatica HOM05D000607 ORTHO05D000518 4.8e-07 58.2 54 55.6
PSO478G0534 Papaver somniferum HOM05D000607 ORTHO05D000518 6.3e-07 57.8 60 46.7
PSO478G1537 Papaver somniferum HOM05D000607 ORTHO05D000518 6.3e-07 57.8 60 46.7
PSO478G2148 Papaver somniferum HOM05D000607 ORTHO05D000518 6.3e-07 57.8 75 40.0
PSO478G2500 Papaver somniferum HOM05D000607 ORTHO05D000518 6.3e-07 57.8 54 51.9
PSO782G3889 Papaver somniferum HOM05D000607 ORTHO05D000518 6.3e-07 57.8 60 48.3
Potri.004G073000 Populus trichocarpa HOM05D000607 ORTHO05D000518 6.3e-07 57.8 53 58.5
Migut.F00284 Erythranthe guttata HOM05D000607 ORTHO05D000518 8.3e-07 57.4 53 54.7
Lsat_1_v5_gn_9_56680 Lactuca sativa HOM05D000607 ORTHO05D000518 8.3e-07 57.4 62 48.4
PSO478G0434 Papaver somniferum HOM05D000607 ORTHO05D000518 8.3e-07 57.4 54 50.0
PSO478G0464 Papaver somniferum HOM05D000607 ORTHO05D000518 8.3e-07 57.4 75 42.7
PSO478G4812 Papaver somniferum HOM05D000607 ORTHO05D000518 8.3e-07 57.4 60 50.0
PSO782G0004 Papaver somniferum HOM05D000607 ORTHO05D000518 8.3e-07 57.4 60 48.3
PSO782G1566 Papaver somniferum HOM05D000607 ORTHO05D000518 8.3e-07 57.4 60 48.3
PSO782G1585 Papaver somniferum HOM05D000607 ORTHO05D000518 8.3e-07 57.4 60 48.3
PSO782G4468 Papaver somniferum HOM05D000607 ORTHO05D000518 8.3e-07 57.4 60 48.3
PSO782G4991 Papaver somniferum HOM05D000607 ORTHO05D000518 8.3e-07 57.4 60 48.3
PSO782G5097 Papaver somniferum HOM05D000607 ORTHO05D000518 8.3e-07 57.4 60 48.3
Peaxi162Scf00444g00231 Petunia axillaris HOM05D000607 ORTHO05D000518 8.3e-07 57.4 53 58.5
Solyc03g007870.3 Solanum lycopersicum HOM05D000607 ORTHO05D000518 8.3e-07 57.4 53 56.6
Sopen03g003810 Solanum pennellii HOM05D000607 ORTHO05D000518 8.3e-07 57.4 53 56.6
PGSC0003DMG400009507 Solanum tuberosum HOM05D000607 ORTHO05D000518 8.3e-07 57.4 53 56.6
PGSC0003DMG400031424 Solanum tuberosum HOM05D000607 ORTHO05D000518 8.3e-07 57.4 53 56.6
Oeu036891.1 Olea europaea HOM05D000607 ORTHO05D000518 1.1e-06 57.0 75 41.3
CAN.G126.32 Capsicum annuum HOM05D000607 ORTHO05D000518 1.4e-06 56.6 53 56.6
PSO478G5073 Papaver somniferum HOM05D000607 ORTHO05D000518 1.4e-06 56.6 75 37.3
Lj5A278G73 Lonicera japonica HOM05D000101 ORTHO05D002559 1.8e-06 56.2 60 51.7
Nitab4.5_0007116g0010 Nicotiana tabacum HOM05D000607 ORTHO05D000518 1.8e-06 56.2 53 54.7
Aqoxy5G04072 Aquilegia oxysepala HOM05D000607 ORTHO05D000518 2.4e-06 55.8 62 48.4
MSTRG.27080 Avicennia marina HOM05D000607 ORTHO05D000518 2.4e-06 55.8 53 56.6
CANSAT21G0742 Cannabis sativa HOM05D000607 ORTHO05D000518 2.4e-06 55.8 75 41.3
Ciclev10006246m.g Citrus clementina HOM05D000607 ORTHO05D000518 2.4e-06 55.8 74 37.8
Haze_00053 Corylus avellana HOM05D000607 ORTHO05D000518 2.4e-06 55.8 54 55.6
Gohir.A12G253700 Gossypium hirsutum HOM05D000607 ORTHO05D000518 2.4e-06 55.8 75 38.7
Nitab4.5_0006014g0030 Nicotiana tabacum HOM05D000607 ORTHO05D000518 2.4e-06 55.8 53 54.7
CSS0022422 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 3.1e-06 55.5 62 43.5
Potri.017G147300 Populus trichocarpa HOM05D000607 ORTHO05D000518 3.1e-06 55.5 75 41.3
CANSAT26G0001 Cannabis sativa HOM05D000607 ORTHO05D000518 4.1e-06 55.1 54 55.6
CANSAT26G0002 Cannabis sativa HOM05D000607 ORTHO05D000518 4.1e-06 55.1 75 40.0
CiPaw.05G261800 Carya illinoinensis HOM05D000607 ORTHO05D000518 4.1e-06 55.1 60 51.7
FAN03G2538 Fragaria x ananassa HOM05D000607 ORTHO05D000518 4.1e-06 55.1 62 46.8
Gorai.008G274100 Gossypium raimondii HOM05D000607 ORTHO05D000518 4.1e-06 55.1 60 48.3
AT5G52740 Arabidopsis thaliana HOM05D000607 ORTHO05D000518 5.4e-06 54.7 62 48.4
CSS0046435 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 5.4e-06 54.7 54 51.9
Duzib084G0621 Durio zibethinus HOM05D000607 ORTHO05D000518 5.4e-06 54.7 52 55.8
FAN03G2793 Fragaria x ananassa HOM05D000607 ORTHO05D000518 5.4e-06 54.7 62 45.2
Gohir.D12G256000 Gossypium hirsutum HOM05D000607 ORTHO05D000518 5.4e-06 54.7 75 38.7
HanXRQChr15g0493181 Helianthus annuus HOM05D000607 ORTHO05D000518 5.4e-06 54.7 60 45.0
PSO782G5718 Papaver somniferum HOM05D000607 ORTHO05D000518 5.4e-06 54.7 60 46.7
SalBow4G3096 Salvia bowleyana HOM05D000607 ORTHO05D000518 5.4e-06 54.7 62 46.8
Sed0023456 Sechium edule HOM05D000607 ORTHO05D000518 5.4e-06 54.7 75 38.7
GSVIVG01028846001 Vitis vinifera HOM05D000607 ORTHO05D000518 5.4e-06 54.7 62 46.8
AL8G27170 Arabidopsis lyrata HOM05D000607 ORTHO05D000518 7.0e-06 54.3 54 55.6
Lalb_Chr06g0161361 Lupinus albus HOM05D000607 ORTHO05D000518 7.0e-06 54.3 60 46.7
TAR636G0645 Trochodendron aralioides HOM05D000607 ORTHO05D000518 7.0e-06 54.3 60 48.3
VMungo0602G0001 Vigna mungo HOM05D000607 ORTHO05D000518 7.0e-06 54.3 53 52.8
FvH4_7g30310 Fragaria vesca HOM05D000607 ORTHO05D000518 9.1e-06 53.9 62 46.8
FAN01G1630 Fragaria x ananassa HOM05D000607 ORTHO05D000518 9.1e-06 53.9 62 46.8
FAN06G1595 Fragaria x ananassa HOM05D000607 ORTHO05D000518 9.1e-06 53.9 62 46.8
FAN06G4931 Fragaria x ananassa HOM05D000607 ORTHO05D000518 9.1e-06 53.9 62 46.8
MBI11_g29824_MAGBIO Magnolia biondii HOM05D000607 ORTHO05D000518 9.1e-06 53.9 62 48.4
QL09p012661 Quercus lobata HOM05D000607 ORTHO05D000518 9.1e-06 53.9 62 46.8


User provided reference genes

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