Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 0.0e+00 2619.7 1432 100.0
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 0.0e+00 2416.0 1440 91.9
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 0.0e+00 2271.9 1452 84.3
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 0.0e+00 2265.7 1447 85.6
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 2205.3 1440 82.3
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 2178.3 1333 85.4
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 0.0e+00 2178.3 1444 81.6
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 0.0e+00 2175.6 1458 82.2
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 2156.7 1333 84.7
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 2016.5 1336 80.5
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 0.0e+00 1769.2 1336 71.0
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 0.0e+00 1427.9 1334 58.0
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 0.0e+00 1414.4 1333 58.3
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 0.0e+00 1406.7 1344 56.9
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 0.0e+00 1401.3 1333 56.6
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 0.0e+00 1376.3 1326 56.5
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 0.0e+00 1358.6 1328 55.6
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 0.0e+00 1344.7 1331 55.1
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 0.0e+00 1342.0 1337 55.3
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 0.0e+00 1335.9 1334 55.1
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 0.0e+00 1326.2 1327 54.2
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1323.1 1325 54.4
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1313.5 1325 53.9
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 0.0e+00 1301.2 1325 54.3
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1298.9 1000 72.4
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 0.0e+00 1282.3 1335 52.2
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1280.0 1328 53.2
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1279.6 1325 53.0
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 0.0e+00 1279.2 1336 53.4
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 0.0e+00 1275.4 1341 53.0
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1266.1 1349 52.8
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 0.0e+00 1262.3 1333 52.7
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1245.0 1349 52.1
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 0.0e+00 1244.2 1161 56.8
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 0.0e+00 1228.0 1207 54.6
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 0.0e+00 1217.2 1344 51.5
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 0.0e+00 1211.1 1154 55.5
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 0.0e+00 1186.0 1338 49.4
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 0.0e+00 1177.9 1347 49.9
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1177.9 1329 49.2
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 0.0e+00 1176.4 1340 48.8
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 0.0e+00 1175.2 1134 55.4
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 0.0e+00 1173.7 1347 49.1
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1160.2 1135 54.8
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1159.1 1327 48.4
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 0.0e+00 1154.8 1337 48.5
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 0.0e+00 1151.7 1331 48.2
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 0.0e+00 1145.6 1363 48.1
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 0.0e+00 1142.5 1355 48.0
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 0.0e+00 1140.9 1332 47.6
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 0.0e+00 1122.8 1333 47.1
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 0.0e+00 1106.7 1037 57.6
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1091.3 1329 46.2
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 0.0e+00 1081.6 1147 52.7
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 0.0e+00 1078.9 1328 47.7
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 4.4e-294 1015.4 1124 50.1
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 1.0e-287 994.2 1121 49.9
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 5.3e-284 981.9 1237 44.6
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 7.7e-283 978.0 951 56.5
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 1.7e-282 976.9 1009 52.3
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 3.2e-281 972.6 1156 48.4
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 2.3e-279 966.5 1121 48.1
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 1.5e-278 963.8 951 54.8
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 1.2e-275 954.1 952 54.5
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 3.3e-265 919.5 861 58.5
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 1.0e-263 914.4 1341 41.4
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 2.3e-263 913.3 1340 41.2
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 1.0e-250 871.3 849 56.8
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 1.3e-242 844.3 1212 41.8
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 1.1e-217 761.5 1212 39.0
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 2.3e-202 710.7 717 54.3
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 4.2e-196 689.9 1350 34.8
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 2.4e-191 674.1 717 52.4
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 4.7e-179 633.3 1439 32.8
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 3.8e-173 613.6 1379 32.6
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 2.0e-169 601.3 620 53.7
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 1.7e-165 588.2 1355 32.2
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 3.8e-165 587.0 1327 32.5
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 3.4e-161 573.9 899 39.3
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 1.4e-151 542.0 427 75.9
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 2.7e-150 537.7 350 83.7
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 2.6e-97 361.7 582 38.7
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 6.5e-96 357.1 1263 26.7
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 1.3e-83 316.2 490 38.8
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 2.0e-68 265.8 275 55.6
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 5.2e-61 241.1 186 69.4
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 2.5e-55 222.2 237 51.9
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 2.0e-49 202.6 173 60.1
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 4.7e-38 164.9 128 71.1
Eucgr.B01587 Eucalyptus grandis HOM05D007614 ORTHO05D009538 5.2e-37 161.4 120 69.2
Actinidia14288 Actinidia chinensis HOM05D007614 ORTHO05D009538 2.8e-30 139.0 120 60.8
HanXRQChr03g0089471 Helianthus annuus HOM05D007614 ORTHO05D009538 4.4e-28 131.7 284 33.8
Actinidia27756 Actinidia chinensis HOM05D007614 ORTHO05D009538 5.8e-28 131.3 110 64.5
Os03g0341200 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 2.5e-15 89.4 55 76.4
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 6.4e-11 74.7 112 40.2
Actinidia14287 Actinidia chinensis HOM05D065619 ORTHO05D037991 3.9e-08 65.5 84 42.9
Os05g0314700 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 6.6e-08 64.7 100 41.0
Cre07.g314700 Chlamydomonas reinhardtii HOM05D058327 ORTHO05D009538 2.1e-06 59.7 287 24.4


User provided reference genes

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