Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 1.7e-117 426.0 221 100.0
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 2.8e-115 418.7 221 98.6
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 1.7e-112 409.5 222 96.4
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 8.4e-112 407.1 238 91.2
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 2.7e-110 402.1 222 94.6
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 5.8e-105 384.4 221 91.4
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 1.7e-104 382.9 221 91.4
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 3.8e-104 381.7 212 93.9
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 4.2e-103 378.3 221 89.6
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 3.7e-99 365.2 224 84.4
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 3.4e-97 358.6 221 85.5
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 4.9e-96 354.8 221 84.6
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 1.1e-95 353.6 221 84.6
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 1.1e-95 353.6 221 84.6
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.1e-82 310.5 187 85.6
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 1.0e-80 303.9 186 86.6
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.0e-69 267.3 221 62.4
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 2.3e-69 266.2 210 64.8
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 8.8e-69 264.2 224 61.6
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 3.3e-68 262.3 221 61.5
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 3.7e-67 258.8 225 61.8
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 4.8e-67 258.5 226 61.5
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 6.3e-67 258.1 219 59.4
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 1.8e-66 256.5 225 58.7
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 2.4e-66 256.1 228 60.5
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 7.0e-66 254.6 223 57.8
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 1.6e-65 253.4 223 60.5
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 3.5e-65 252.3 154 88.3
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 3.5e-65 252.3 235 56.2
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 2.2e-64 249.6 221 58.8
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 2.9e-64 249.2 229 58.1
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 3.8e-64 248.8 225 56.9
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 3.8e-64 248.8 225 58.2
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 8.5e-64 247.7 221 58.4
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 8.5e-64 247.7 221 58.4
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.1e-63 247.3 220 56.4
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 1.5e-63 246.9 221 56.6
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.5e-63 246.1 231 59.3
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 2.5e-63 246.1 228 57.5
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 3.2e-63 245.7 232 58.2
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 3.2e-63 245.7 219 57.1
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 4.2e-63 245.4 208 62.0
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 5.5e-63 245.0 228 57.9
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 5.5e-63 245.0 210 58.6
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 7.2e-63 244.6 229 56.3
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 7.2e-63 244.6 226 58.4
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 9.4e-63 244.2 217 58.5
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 1.2e-62 243.8 227 57.7
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 1.6e-62 243.4 224 58.5
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.6e-62 243.4 218 59.6
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 4.7e-62 241.9 230 57.0
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 6.1e-62 241.5 218 59.6
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 1.4e-61 240.4 219 58.9
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 2.3e-61 239.6 218 59.6
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 4.0e-61 238.8 217 57.6
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 4.0e-61 238.8 217 57.1
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 5.2e-61 238.4 218 58.7
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 8.8e-61 237.7 217 56.7
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 2.6e-60 236.1 225 57.8
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 4.4e-60 235.3 224 58.5
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 4.4e-60 235.3 217 56.2
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 5.7e-60 235.0 222 55.9
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 7.5e-60 234.6 216 55.1
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 1.3e-59 233.8 270 51.1
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 1.3e-59 233.8 217 56.2
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 1.7e-59 233.4 232 52.6
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 2.2e-59 233.0 224 57.1
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 2.2e-59 233.0 240 51.7
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 2.8e-59 232.6 211 57.3
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 2.8e-59 232.6 226 54.0
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 2.8e-59 232.6 225 55.6
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 4.8e-59 231.9 190 65.8
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 4.8e-59 231.9 182 63.2
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 8.2e-59 231.1 216 54.2
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 1.4e-58 230.3 200 58.5
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 1.4e-58 230.3 212 53.3
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.8e-58 229.9 219 53.0
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.2e-57 227.3 220 55.5
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 2.0e-57 226.5 204 58.8
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 1.0e-56 224.2 186 61.3
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 1.3e-56 223.8 221 56.1
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.2e-56 223.0 224 56.2
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 2.2e-56 223.0 223 53.8
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 5.0e-56 221.9 214 57.5
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 1.5e-55 220.3 247 52.2
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.1e-54 216.5 219 53.4
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 1.4e-53 213.8 227 53.7
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 1.4e-53 213.8 179 59.8
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 1.8e-53 213.4 227 53.3
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 4.4e-52 208.8 161 65.8
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 2.2e-51 206.5 217 50.7
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 1.1e-50 204.1 227 52.0
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 2.4e-50 203.0 208 55.3
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 3.1e-50 202.6 185 59.5
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 2.0e-49 199.9 228 49.6
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 1.3e-48 197.2 203 53.2
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 5.0e-48 195.3 355 38.6
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 2.5e-47 193.0 205 52.7
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.7e-46 189.5 256 46.1
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 3.6e-46 189.1 212 49.1
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 3.6e-46 189.1 204 51.0
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 1.0e-45 187.6 220 48.2
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 1.0e-45 187.6 160 60.0
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 1.4e-45 187.2 140 67.1
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.0e-44 183.3 172 57.6
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 3.4e-44 182.6 312 38.8
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 4.4e-44 182.2 219 47.0
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 7.5e-44 181.4 150 64.0
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 8.3e-43 177.9 218 48.2
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 1.1e-42 177.6 215 47.0
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 2.0e-41 173.3 218 43.1
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 6.6e-40 168.3 265 41.1
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 4.3e-39 165.6 171 55.0
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 9.5e-39 164.5 164 56.1
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.6e-36 156.4 218 42.2
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 4.9e-35 152.1 158 53.2
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.3e-32 143.3 176 54.5
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 6.6e-32 141.7 129 61.2
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 3.3e-31 139.4 119 63.0
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 1.2e-28 131.0 131 47.3
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.5e-28 130.6 142 51.4
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 2.0e-28 130.2 164 48.8
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 1.4e-26 124.0 221 35.7
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.0e-24 117.9 64 87.5
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 4.3e-23 112.5 104 57.7
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 1.6e-22 110.5 211 36.0
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 6.2e-22 108.6 92 64.1
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.3e-21 106.7 109 50.5
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 6.8e-21 105.1 208 32.2
CARHR182560 Cardamine hirsuta HOM05D004725 ORTHO05D005683 5.8e-20 102.1 52 96.2
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 7.5e-20 101.7 176 40.9
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 7.5e-20 101.7 160 40.0
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 3.2e-18 96.3 99 52.5
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 6.6e-16 88.6 212 30.7
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 7.3e-15 85.1 84 57.1
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 9.5e-15 84.7 99 50.5
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 6.8e-13 78.6 130 41.5
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 1.2e-12 77.8 85 52.9
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 6.4e-11 72.0 212 27.4
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 3.2e-10 69.7 66 56.1
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 3.5e-09 66.2 80 46.2
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 6.0e-09 65.5 86 44.2
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 1.0e-08 64.7 64 51.6
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 1.7e-08 63.9 150 31.3
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.1e-07 61.2 53 60.4
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 7.3e-07 58.5 59 55.9
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 6.2e-06 55.5 76 42.1


User provided reference genes

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