Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 9.7e-211 736.5 356 100.0
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 5.0e-199 697.6 356 94.4
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 2.2e-194 682.2 356 92.4
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 4.1e-193 677.9 360 90.8
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 5.4e-193 677.6 360 91.4
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 5.4e-193 677.6 360 91.4
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 2.0e-192 675.6 360 90.8
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 1.1e-190 669.8 360 90.3
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 2.5e-190 668.7 356 88.8
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 4.2e-190 667.9 360 90.3
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 5.2e-188 661.0 360 88.6
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 3.5e-184 648.3 363 86.0
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 2.9e-183 645.2 363 85.7
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 1.5e-171 606.3 362 80.4
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 1.5e-171 606.3 361 80.3
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.7e-170 602.8 366 77.9
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 3.7e-170 601.7 364 80.5
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 9.2e-169 597.0 364 79.4
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 2.1e-168 595.9 356 79.2
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 6.0e-168 594.3 364 78.3
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 2.3e-167 592.4 364 79.4
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.5e-166 589.0 367 76.8
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 3.3e-166 588.6 369 76.7
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 3.3e-166 588.6 369 76.2
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 9.5e-166 587.0 357 78.7
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.2e-165 586.6 365 77.5
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.1e-165 585.9 361 76.7
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 2.1e-165 585.9 362 77.1
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 2.1e-165 585.9 357 77.6
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 2.8e-165 585.5 363 76.6
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 3.6e-165 585.1 353 79.9
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 4.7e-165 584.7 364 76.6
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 8.1e-165 583.9 362 76.8
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 1.1e-164 583.6 362 75.7
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 1.8e-164 582.8 362 77.3
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 1.8e-164 582.8 362 75.7
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.1e-164 582.0 356 78.7
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 4.0e-164 581.6 357 77.9
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 4.0e-164 581.6 362 76.0
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 4.0e-164 581.6 353 79.3
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 5.2e-164 581.3 356 78.9
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 6.8e-164 580.9 353 79.3
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 8.9e-164 580.5 360 76.1
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-163 580.1 353 79.0
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 2.6e-163 578.9 362 76.5
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 3.4e-163 578.6 362 76.5
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.4e-163 578.6 353 78.8
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 3.4e-163 578.6 388 73.5
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 3.4e-163 578.6 354 78.2
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 5.8e-163 577.8 357 77.6
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 5.8e-163 577.8 363 75.5
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 5.8e-163 577.8 362 75.4
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 9.9e-163 577.0 357 76.2
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.7e-162 576.2 352 79.0
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 2.2e-162 575.9 352 78.4
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 8.3e-162 573.9 351 78.1
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.1e-161 573.5 367 74.7
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.4e-161 573.2 367 74.4
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.4e-161 573.2 367 74.4
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.9e-161 572.8 368 74.7
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 3.2e-161 572.0 361 76.5
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 3.2e-161 572.0 353 76.8
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 3.2e-161 572.0 349 77.9
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 4.1e-161 571.6 359 76.3
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 5.4e-161 571.2 362 75.4
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 7.1e-161 570.9 356 76.7
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 7.1e-161 570.9 350 78.3
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.6e-160 569.7 362 75.1
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 2.1e-160 569.3 352 77.8
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 2.1e-160 569.3 363 75.5
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 2.7e-160 568.9 352 77.6
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 7.8e-160 567.4 356 76.4
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 7.8e-160 567.4 352 77.3
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 1.0e-159 567.0 352 76.7
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 1.3e-159 566.6 360 74.7
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 2.3e-159 565.8 355 77.2
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 3.9e-159 565.1 361 75.1
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 5.1e-159 564.7 352 78.1
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 1.1e-158 563.5 352 76.1
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 1.5e-158 563.1 352 76.4
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.3e-158 562.0 353 75.6
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.2e-157 560.1 356 75.3
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 1.6e-157 559.7 359 74.9
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 3.6e-157 558.5 365 72.3
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 8.1e-157 557.4 358 75.1
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.1e-156 557.0 349 76.5
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 1.8e-156 556.2 369 71.3
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 8.9e-156 553.9 357 73.9
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 2.6e-155 552.4 385 70.4
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 1.3e-154 550.1 369 70.5
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 2.4e-153 545.8 366 71.3
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 7.1e-153 544.3 354 74.3
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.5e-152 542.0 445 62.7
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 1.0e-151 540.4 440 62.7
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 5.6e-150 534.6 352 72.2
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.5e-147 526.6 328 76.5
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 5.8e-147 524.6 360 69.2
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.7e-146 523.1 356 70.2
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 3.8e-146 521.9 415 64.3
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 4.9e-146 521.5 376 67.8
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 4.2e-145 518.5 360 68.9
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.3e-143 512.7 357 67.2
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 3.0e-143 512.3 456 57.5
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 3.3e-142 508.8 348 69.3
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 1.3e-141 506.9 387 67.4
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 2.1e-141 506.1 360 66.9
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 2.8e-141 505.8 362 66.0
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 1.4e-140 503.4 360 65.8
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 2.4e-140 502.7 362 64.6
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 9.0e-140 500.7 355 66.2
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 2.2e-138 496.1 350 65.7
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 2.4e-137 492.7 357 63.3
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 3.0e-135 485.7 273 85.3
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 4.8e-133 478.4 519 50.5
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 3.1e-124 449.1 254 83.9
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 3.2e-121 439.1 336 62.2
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 1.5e-118 430.3 344 63.7
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 3.7e-117 425.6 270 73.3
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 3.0e-111 406.0 273 71.1
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 2.3e-103 379.8 345 55.9
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 6.7e-103 378.3 344 54.7
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 1.7e-101 373.6 373 50.1
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.4e-100 370.5 302 59.3
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 1.3e-82 310.8 223 66.4
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 5.5e-81 305.4 193 73.6
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 1.4e-79 300.8 271 58.7
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 9.2e-76 288.1 164 84.8
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 7.7e-75 285.0 205 69.8
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 1.1e-73 281.2 180 73.3
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.5e-73 280.8 182 75.8
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 9.8e-70 268.1 177 70.6
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.1e-68 264.6 345 45.5
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 1.1e-55 221.5 175 59.4
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.9e-49 200.7 118 79.7
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 2.4e-44 183.7 171 57.9
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 7.1e-44 182.2 106 79.2
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 2.3e-34 150.6 90 82.2
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 3.0e-34 150.2 105 73.3
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 7.4e-25 119.0 151 46.4
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 6.9e-23 112.5 91 60.4
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.0e-18 98.6 57 78.9
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 1.9e-17 94.4 77 61.0
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 4.3e-17 93.2 55 72.7
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 9.6e-17 92.0 232 28.4
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 3.1e-15 87.0 62 61.3
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 1.7e-13 81.3 72 63.9
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 6.5e-13 79.3 83 49.4
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 1.2e-11 75.1 47 70.2
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 1.6e-08 64.7 74 48.6
Oeu000043.1 Olea europaea HOM05D000206 ORTHO05D000232 1.5e-06 58.2 285 21.8
Migut.B01562 Erythranthe guttata HOM05D000206 ORTHO05D000232 1.0e-05 55.5 124 29.8


User provided reference genes

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