Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 3.0e-125 451.8 226 100.0
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.5e-111 406.4 226 89.8
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 3.0e-104 382.1 227 85.0
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 3.2e-82 308.9 227 73.6
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 7.1e-82 307.8 229 71.6
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 3.9e-64 248.8 236 61.0
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 6.3e-54 214.9 233 53.2
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 9.0e-53 211.1 234 53.0
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.2e-49 200.7 228 54.4
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 1.6e-49 200.3 221 54.8
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 2.5e-47 193.0 223 54.3
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 2.2e-46 189.9 223 53.8
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 7.7e-44 181.4 223 53.8
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 3.0e-40 169.5 220 51.8
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.5e-39 167.2 205 52.7
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 2.0e-36 156.8 223 48.0
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 3.4e-36 156.0 223 47.1
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 3.4e-36 156.0 223 47.1
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 3.4e-36 156.0 223 47.1
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 7.7e-36 154.8 238 47.9
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 1.4e-34 150.6 248 44.0
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.2e-33 147.5 241 46.9
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 7.9e-33 144.8 240 43.3
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 1.0e-32 144.4 236 44.9
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 1.4e-32 144.1 220 45.9
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 1.4e-32 144.1 229 44.1
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 1.1e-31 141.0 267 40.4
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 7.4e-31 138.3 238 45.0
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 9.7e-31 137.9 270 41.9
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 3.7e-30 136.0 254 39.8
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 1.1e-29 134.4 232 42.2
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 2.4e-29 133.3 245 41.2
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 4.1e-29 132.5 268 40.7
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 1.6e-28 130.6 253 39.1
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 2.6e-28 129.8 244 43.0
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 3.5e-28 129.4 257 38.5
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 3.5e-28 129.4 257 38.9
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 4.5e-28 129.0 266 39.8
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 4.5e-28 129.0 259 39.8
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 5.9e-28 128.6 229 43.2
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 7.7e-28 128.3 255 40.8
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.0e-27 127.9 234 42.7
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.3e-27 127.5 249 42.6
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 1.3e-27 127.5 258 38.8
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 1.7e-27 127.1 255 39.6
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 2.2e-27 126.7 232 42.2
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.9e-27 126.3 231 41.6
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 3.8e-27 125.9 231 42.0
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 3.8e-27 125.9 266 38.0
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 5.0e-27 125.6 229 41.5
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 5.0e-27 125.6 250 41.6
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 6.5e-27 125.2 233 41.6
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 6.5e-27 125.2 267 36.7
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 1.1e-26 124.4 257 39.3
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 1.5e-26 124.0 231 41.1
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 1.5e-26 124.0 233 41.2
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 1.5e-26 124.0 254 37.8
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 1.9e-26 123.6 259 38.2
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 2.5e-26 123.2 224 40.6
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.2e-26 122.9 253 38.7
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 5.5e-26 122.1 253 38.7
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 1.2e-25 120.9 260 38.8
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 1.2e-25 120.9 229 41.5
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 1.6e-25 120.6 256 37.9
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 2.7e-25 119.8 257 37.7
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 3.6e-25 119.4 239 39.3
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 3.6e-25 119.4 248 37.1
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 8.0e-25 118.2 232 41.8
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.0e-24 117.9 255 36.9
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 1.8e-24 117.1 254 38.2
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 3.0e-24 116.3 254 38.6
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 5.2e-24 115.5 256 38.3
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 5.2e-24 115.5 262 34.7
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 8.8e-24 114.8 225 41.3
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.5e-23 114.0 261 34.9
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 2.0e-23 113.6 250 36.0
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 2.6e-23 113.2 249 39.4
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 9.7e-23 111.3 194 40.2
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 9.7e-23 111.3 249 36.9
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 1.7e-22 110.5 245 35.9
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 2.2e-22 110.2 221 38.5
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.8e-22 109.8 260 37.7
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 3.7e-22 109.4 250 36.0
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 8.2e-22 108.2 252 36.9
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 1.8e-21 107.1 248 35.9
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 4.1e-21 105.9 248 35.9
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 9.1e-21 104.8 222 42.3
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 1.6e-20 104.0 246 37.4
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 2.7e-20 103.2 254 36.2
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 5.9e-20 102.1 233 37.3
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 5.9e-20 102.1 249 36.5
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 1.0e-19 101.3 235 34.5
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 1.0e-19 101.3 229 38.0
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 1.7e-19 100.5 258 32.6
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 5.0e-19 99.0 253 34.4
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 6.5e-19 98.6 262 35.5
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 6.5e-19 98.6 232 36.6
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 8.5e-19 98.2 220 39.5
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 1.5e-18 97.4 254 33.5
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.5e-18 97.4 256 35.5
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 1.2e-17 94.4 260 34.2
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 5.2e-16 89.0 228 36.4
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 8.8e-16 88.2 229 35.8
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 1.2e-15 87.8 248 37.1
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 1.5e-15 87.4 247 33.2
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 1.5e-15 87.4 232 34.5
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 3.4e-15 86.3 252 33.3
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 4.4e-15 85.9 247 35.6
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 9.8e-15 84.7 235 32.8
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 3.7e-14 82.8 248 34.3
Thhalv10000359m.g Eutrema salsugineum HOM05D001181 ORTHO05D005506 6.3e-14 82.0 86 54.7
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 8.3e-14 81.6 185 33.5
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 5.4e-13 79.0 226 33.6
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 2.7e-12 76.6 226 32.7
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 7.7e-12 75.1 229 33.6
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 7.7e-12 75.1 241 32.4
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 1.0e-11 74.7 176 38.1
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 1.7e-11 73.9 240 33.8
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 1.7e-11 73.9 128 42.2
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 1.5e-10 70.9 251 31.9
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 4.2e-10 69.3 194 32.0
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 5.5e-10 68.9 78 56.4
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 1.2e-09 67.8 246 29.3
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 1.2e-09 67.8 238 31.5
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 2.7e-09 66.6 238 31.1


User provided reference genes

Program Settings