Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 4.1e-190 667.9 340 100.0
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 6.3e-175 617.5 337 93.5
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 3.8e-164 581.6 338 90.2
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 8.5e-164 580.5 336 88.1
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 1.2e-162 576.6 336 86.9
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 1.6e-162 576.2 336 88.4
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 5.9e-157 557.8 337 86.4
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 5.9e-157 557.8 337 86.4
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 4.0e-153 545.0 337 84.9
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 4.0e-153 545.0 337 84.9
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 1.2e-144 516.9 343 79.3
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 7.0e-142 507.7 343 78.1
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 1.6e-130 469.9 295 79.3
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 1.1e-126 457.2 307 73.6
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 1.1e-126 457.2 342 70.2
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 1.1e-126 457.2 345 71.9
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 3.2e-126 455.7 344 70.1
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 1.2e-125 453.8 350 68.6
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.3e-124 450.3 325 70.2
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 1.3e-124 450.3 347 68.0
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 3.0e-124 449.1 340 68.5
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 3.0e-124 449.1 340 68.5
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 3.9e-124 448.7 345 69.9
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 1.1e-123 447.2 301 72.4
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 3.3e-123 445.7 311 71.4
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 7.3e-123 444.5 345 67.0
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 7.3e-123 444.5 326 70.2
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 9.5e-123 444.1 339 67.8
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 9.5e-123 444.1 348 67.0
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.1e-122 443.0 345 67.0
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.8e-122 442.6 333 67.9
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 3.6e-122 442.2 294 75.2
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 6.2e-122 441.4 349 65.9
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 6.2e-122 441.4 297 71.7
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 6.2e-122 441.4 246 85.4
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 1.8e-121 439.9 307 72.3
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 5.2e-121 438.3 340 69.1
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 8.9e-121 437.6 323 68.1
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 8.9e-121 437.6 352 65.6
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 2.0e-120 436.4 297 76.1
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 2.6e-120 436.0 350 66.9
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.6e-120 436.0 352 65.6
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 4.4e-120 435.3 290 73.8
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 5.8e-120 434.9 303 71.3
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 5.8e-120 434.9 325 70.2
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 7.6e-120 434.5 342 66.4
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 9.9e-120 434.1 351 65.5
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 1.3e-119 433.7 280 75.4
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 1.7e-119 433.3 305 70.8
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 2.9e-119 432.6 310 71.0
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 1.1e-118 430.6 342 67.3
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 1.4e-118 430.3 345 64.6
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 2.4e-118 429.5 356 67.4
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 2.4e-118 429.5 324 68.2
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 4.1e-118 428.7 302 72.2
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 7.1e-118 427.9 355 64.5
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 1.2e-117 427.2 328 68.0
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 1.2e-117 427.2 322 68.6
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.6e-117 426.8 365 62.7
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 2.1e-117 426.4 353 65.2
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 1.0e-116 424.1 294 69.7
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 2.3e-116 422.9 302 71.9
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 1.1e-115 420.6 343 64.7
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 7.3e-115 417.9 385 59.2
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 9.6e-115 417.5 290 71.7
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 6.2e-114 414.8 294 71.8
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 1.4e-113 413.7 341 65.1
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 8.9e-113 411.0 245 80.4
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 8.9e-113 411.0 297 68.4
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 1.2e-112 410.6 316 65.2
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 2.2e-111 406.4 317 66.6
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 2.9e-111 406.0 352 60.8
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 4.9e-111 405.2 295 67.8
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 1.1e-110 404.1 333 62.8
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 5.4e-110 401.7 303 66.3
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 1.2e-109 400.6 343 64.4
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 1.6e-109 400.2 245 75.9
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 1.6e-109 400.2 324 63.9
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 1.6e-109 400.2 264 75.4
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 1.6e-109 400.2 347 60.8
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 2.7e-109 399.4 345 61.4
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 7.8e-109 397.9 306 65.4
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 2.3e-108 396.4 321 67.9
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 8.7e-108 394.4 341 62.5
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 1.5e-107 393.7 220 84.5
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 1.6e-106 390.2 338 61.5
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 1.6e-106 390.2 294 67.7
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 8.1e-106 387.9 312 64.4
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 1.2e-104 384.0 294 67.7
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 5.1e-100 368.6 301 64.1
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 3.3e-99 365.9 352 59.9
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 4.2e-94 349.0 297 60.9
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 3.5e-93 345.9 359 56.0
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 3.4e-88 329.3 246 62.2
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 2.4e-81 306.6 249 57.4
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 8.4e-79 298.1 246 59.8
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 1.9e-78 297.0 336 51.2
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 9.3e-78 294.7 163 85.9
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 2.3e-76 290.0 313 49.2
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 3.3e-75 286.2 165 80.6
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 3.9e-68 262.7 250 50.4
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 5.1e-68 262.3 179 70.4
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.1e-62 244.6 136 83.1
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 5.7e-59 232.3 216 49.1
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 2.2e-55 220.3 126 84.9
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 2.2e-55 220.3 126 84.9
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 2.9e-55 219.9 132 81.1
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 8.2e-50 201.8 229 53.3
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 3.5e-48 196.4 132 71.2
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 4.8e-42 176.0 272 37.1
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 1.2e-35 154.8 241 35.7
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 4.1e-33 146.4 238 37.4
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 2.7e-32 143.7 107 69.2
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 1.4e-28 131.3 167 50.3
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 8.3e-26 122.1 201 42.3
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 4.6e-24 116.3 93 66.7
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 1.2e-21 108.2 75 68.0
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 4.0e-20 103.2 53 84.9
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 7.0e-17 92.4 116 53.4
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 1.5e-14 84.7 129 42.6
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 7.3e-14 82.4 55 67.3
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 3.6e-13 80.1 129 41.1
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 2.6e-11 73.9 39 92.3
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 2.6e-11 73.9 39 92.3
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 2.2e-10 70.9 38 78.9
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.5e-06 57.4 232 26.3
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 3.3e-06 57.0 232 25.9
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 4.3e-06 56.6 232 25.9
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 4.3e-06 56.6 229 26.2
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 5.6e-06 56.2 232 25.9
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 7.3e-06 55.8 169 29.6
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 9.5e-06 55.5 232 25.9
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 9.5e-06 55.5 182 29.1
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 9.5e-06 55.5 230 25.2


User provided reference genes

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