Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G03550 Arabidopsis thaliana HOM05D010121 ORTHO05D018475 2.1e-55 218.8 111 100.0
AL6G13000 Arabidopsis lyrata HOM05D010121 ORTHO05D013201 3.9e-41 171.4 99 87.9
Carub.0006s0236 Capsella rubella HOM05D000279 ORTHO05D018475 1.9e-35 152.5 98 80.6
CARHR209780 Cardamine hirsuta HOM05D000279 ORTHO05D018475 1.9e-24 115.9 97 62.9
BcaB01g05831 Brassica carinata HOM05D000279 ORTHO05D000498 5.3e-22 107.8 101 58.4
C03p01570 Brassica napus HOM05D000279 ORTHO05D000498 5.3e-22 107.8 101 58.4
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 2.0e-21 105.9 101 58.4
BcaB01g05816 Brassica carinata HOM05D000279 ORTHO05D000498 5.8e-21 104.4 101 58.4
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 2.2e-20 102.4 101 56.4
Thhalv10014790m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 9.7e-16 87.0 137 43.1
AL6G13010 Arabidopsis lyrata HOM05D000279 ORTHO05D013201 6.3e-15 84.3 95 51.6
C04p69720 Brassica napus HOM05D000279 ORTHO05D000498 5.0e-12 74.7 87 49.4
A04p32230 Brassica napus HOM05D000279 ORTHO05D000498 6.5e-12 74.3 87 49.4
BraA04t18677Z Brassica rapa HOM05D000279 ORTHO05D000498 6.5e-12 74.3 87 49.4
BolC4t28471H Brassica oleracea HOM05D000279 ORTHO05D000498 1.4e-11 73.2 87 48.3
BcaC02g07237 Brassica carinata HOM05D000279 ORTHO05D000498 1.9e-11 72.8 89 47.2
Sp4g24600 Schrenkiella parvula HOM05D000279 ORTHO05D000498 5.5e-11 71.2 85 47.1
A04p32220 Brassica napus HOM05D000279 ORTHO05D000498 2.1e-10 69.3 87 46.0
BraA04t18676Z Brassica rapa HOM05D000279 ORTHO05D000498 2.1e-10 69.3 87 46.0
C04p69710 Brassica napus HOM05D000279 ORTHO05D000498 3.6e-10 68.6 87 47.1
BolC4t28470H Brassica oleracea HOM05D000279 ORTHO05D000498 3.6e-10 68.6 87 47.1
BcaB06g29246 Brassica carinata HOM05D000279 ORTHO05D000498 6.1e-10 67.8 87 44.8
BcaB06g29247 Brassica carinata HOM05D000279 ORTHO05D000498 1.0e-09 67.0 87 44.8
BcaNung05221 Brassica carinata HOM05D000279 ORTHO05D000498 1.0e-09 67.0 87 44.8
BcaNung05222 Brassica carinata HOM05D000279 ORTHO05D000498 1.0e-09 67.0 92 44.6
CARHR137500 Cardamine hirsuta HOM05D000279 ORTHO05D000498 1.4e-09 66.6 84 45.2
Sp4g24610 Schrenkiella parvula HOM05D000279 ORTHO05D000498 1.9e-08 62.8 67 46.3
BcaB01g04496 Brassica carinata HOM05D010121 ORTHO05D013201 5.7e-08 61.2 93 46.2
Thhalv10023616m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 5.7e-08 61.2 88 47.7
C03p28200 Brassica napus HOM05D000279 ORTHO05D000498 7.4e-08 60.8 92 40.2
A03p23650 Brassica napus HOM05D000279 ORTHO05D000498 9.7e-08 60.5 92 40.2
BraA03t11581Z Brassica rapa HOM05D000279 ORTHO05D000498 9.7e-08 60.5 92 40.2
BolC3t15191H Brassica oleracea HOM05D000279 ORTHO05D000498 1.3e-07 60.1 92 40.2
Thhalv10023996m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 1.3e-07 60.1 92 43.5
Thhalv10024005m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 1.3e-07 60.1 92 42.4
AL2G11470 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 3.7e-07 58.5 81 43.2
BraA01t03006Z Brassica rapa HOM05D000279 ORTHO05D000498 3.7e-07 58.5 75 48.0
AL4G40910 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 6.3e-07 57.8 92 38.0
AL4G40950 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 6.3e-07 57.8 90 41.1
AL2G15770 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 8.2e-07 57.4 90 37.8
Thhalv10024153m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 8.2e-07 57.4 75 45.3
Thhalv10023572m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 1.1e-06 57.0 87 44.8
Sp2g04170 Schrenkiella parvula HOM05D000279 ORTHO05D000498 1.1e-06 57.0 75 46.7
A05p02990 Brassica napus HOM05D000279 ORTHO05D000498 1.4e-06 56.6 91 39.6
Carub.0004s2486 Capsella rubella HOM05D000279 ORTHO05D000498 1.4e-06 56.6 105 34.3
CARHR168830 Cardamine hirsuta HOM05D000279 ORTHO05D000498 1.4e-06 56.6 90 40.0
CARHR260850 Cardamine hirsuta HOM05D000279 ORTHO05D017442 1.8e-06 56.2 89 34.8
BcaB04g20240 Brassica carinata HOM05D000279 ORTHO05D000498 2.4e-06 55.8 75 44.0
BcaC09g49446 Brassica carinata HOM05D000279 ORTHO05D000498 2.4e-06 55.8 81 44.4
A09p68620 Brassica napus HOM05D000279 ORTHO05D000498 2.4e-06 55.8 92 35.9
C01p36650 Brassica napus HOM05D000279 ORTHO05D000498 2.4e-06 55.8 81 44.4
C03p15900 Brassica napus HOM05D010121 ORTHO05D013201 2.4e-06 55.8 97 42.3
BolC1t03624H Brassica oleracea HOM05D000279 ORTHO05D000498 2.4e-06 55.8 81 44.4
BolC3t14021H Brassica oleracea HOM05D010121 ORTHO05D013201 2.4e-06 55.8 97 42.3
BraA09t42204Z Brassica rapa HOM05D000279 ORTHO05D000498 2.4e-06 55.8 92 35.9
Thhalv10006470m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 2.4e-06 55.8 87 41.4
AL4G40940 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 3.1e-06 55.5 79 43.0
AT2G42455 Arabidopsis thaliana HOM05D000279 ORTHO05D017442 3.1e-06 55.5 79 41.8
BraA06t27147Z Brassica rapa HOM05D000279 ORTHO05D000498 3.1e-06 55.5 90 38.9
C02p12630 Brassica napus HOM05D000279 ORTHO05D000498 4.1e-06 55.1 92 35.9
Carub.0004s2488 Capsella rubella HOM05D000279 ORTHO05D000498 4.1e-06 55.1 58 48.3
C09p21730 Brassica napus HOM05D000279 ORTHO05D000498 5.3e-06 54.7 87 46.0
Thhalv10023954m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 5.3e-06 54.7 56 53.6
BcaC02g09766 Brassica carinata HOM05D000279 ORTHO05D017442 6.9e-06 54.3 74 43.2
BcaC02g09769 Brassica carinata HOM05D000279 ORTHO05D000498 6.9e-06 54.3 102 39.2
BcaC04g22242 Brassica carinata HOM05D000279 ORTHO05D000498 6.9e-06 54.3 87 42.5
C04p32290 Brassica napus HOM05D000279 ORTHO05D000498 6.9e-06 54.3 92 35.9
C04p36820 Brassica napus HOM05D000279 ORTHO05D017442 6.9e-06 54.3 102 39.2
C04p36830 Brassica napus HOM05D000279 ORTHO05D017442 6.9e-06 54.3 74 43.2
CARHR127280 Cardamine hirsuta HOM05D000279 ORTHO05D000498 6.9e-06 54.3 73 43.8
Thhalv10017071m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 6.9e-06 54.3 56 50.0
A04p02630 Brassica napus HOM05D000279 ORTHO05D000498 9.1e-06 53.9 90 40.0
A09p17440 Brassica napus HOM05D000279 ORTHO05D000498 9.1e-06 53.9 94 41.5
BraA04t15989Z Brassica rapa HOM05D000279 ORTHO05D000498 9.1e-06 53.9 90 40.0
Thhalv10008254m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 9.1e-06 53.9 91 37.4
Sp5g21580 Schrenkiella parvula HOM05D000279 ORTHO05D000498 9.1e-06 53.9 76 44.7


User provided reference genes

Program Settings