Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G21620 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 1.4e-50 203.0 132 100.0
AL7G32380 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 3.0e-48 195.3 132 94.7
CARHR228340 Cardamine hirsuta HOM05D004792 ORTHO05D005789 5.8e-44 181.0 135 84.4
Thhalv10026556m.g Eutrema salsugineum HOM05D004792 ORTHO05D005789 4.2e-42 174.9 132 84.8
BcaB03g11686 Brassica carinata HOM05D004792 ORTHO05D005789 1.6e-41 172.9 132 82.6
Carub.0007s1976 Capsella rubella HOM05D004792 ORTHO05D005789 2.1e-41 172.6 134 83.6
A08p15060 Brassica napus HOM05D004792 ORTHO05D005789 7.9e-41 170.6 132 81.1
C03p83150 Brassica napus HOM05D004792 ORTHO05D005789 7.9e-41 170.6 132 81.1
BraA08t33487Z Brassica rapa HOM05D004792 ORTHO05D005789 7.9e-41 170.6 132 81.1
BcaC01g00688 Brassica carinata HOM05D004792 ORTHO05D005789 1.8e-40 169.5 132 81.1
BolC3t20598H Brassica oleracea HOM05D004792 ORTHO05D005789 1.8e-40 169.5 132 81.1
BcaC06g30668 Brassica carinata HOM05D004792 ORTHO05D005789 1.1e-39 166.8 134 82.8
A03p52820 Brassica napus HOM05D004792 ORTHO05D005789 2.8e-38 162.2 134 79.1
BraA03t14358Z Brassica rapa HOM05D004792 ORTHO05D005789 5.3e-37 157.9 134 76.1
C07p51260 Brassica napus HOM05D004792 ORTHO05D005789 1.5e-36 156.4 134 76.9
BcaNung00848 Brassica carinata HOM05D004792 ORTHO05D005789 3.4e-36 155.2 134 76.9
BolC7t45626H Brassica oleracea HOM05D004792 ORTHO05D005789 3.4e-36 155.2 134 76.9
THA.LOC104812802 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 2.2e-27 125.9 134 67.9
Cpa.g.sc27.101 Carica papaya HOM05D004792 ORTHO05D005789 7.9e-25 117.5 156 60.3
Peaxi162Scf00031g00071 Petunia axillaris HOM05D004792 ORTHO05D005789 1.8e-24 116.3 129 59.7
Sed0027560 Sechium edule HOM05D004792 ORTHO05D005789 1.5e-23 113.2 131 67.2
A09p16820 Brassica napus HOM05D004792 ORTHO05D005789 4.4e-23 111.7 106 74.5
BraA09t37319Z Brassica rapa HOM05D004792 ORTHO05D005789 4.4e-23 111.7 106 74.5
THA.LOC104819068 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 4.4e-23 111.7 132 68.2
MELO3C007319.2 Cucumis melo HOM05D004792 ORTHO05D005789 5.7e-23 111.3 125 64.8
Glyma.13G244800 Glycine max HOM05D004792 ORTHO05D005789 7.4e-23 110.9 148 65.5
Actinidia01923 Actinidia chinensis HOM05D001100 ORTHO05D001503 1.7e-22 109.8 96 83.3
Actinidia05593 Actinidia chinensis HOM05D004792 ORTHO05D005789 2.2e-22 109.4 107 71.0
BcaC04g22318 Brassica carinata HOM05D004792 ORTHO05D005789 2.8e-22 109.0 157 56.1
C09p20730 Brassica napus HOM05D004792 ORTHO05D005789 2.8e-22 109.0 157 56.1
BolC9t54970H Brassica oleracea HOM05D004792 ORTHO05D005789 2.8e-22 109.0 157 56.1
CANSAT56G3746 Cannabis sativa HOM05D004792 ORTHO05D005789 2.8e-22 109.0 109 81.7
TWI63G0005 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 2.8e-22 109.0 118 65.3
PGR042G0729 Punica granatum HOM05D004792 ORTHO05D005789 4.8e-22 108.2 126 65.9
Glyma.15G068900 Glycine max HOM05D004792 ORTHO05D005789 8.2e-22 107.5 117 70.1
BcaB07g31269 Brassica carinata HOM05D004792 ORTHO05D005789 1.1e-21 107.1 106 72.6
Aa31LG6G3620 Aethionema arabicum HOM05D004792 ORTHO05D005789 1.4e-21 106.7 134 67.2
Carub.0002s0390 Capsella rubella HOM05D004792 ORTHO05D005789 2.4e-21 105.9 101 75.2
CsaV3_6G049770 Cucumis sativus L. HOM05D004792 ORTHO05D005789 2.4e-21 105.9 125 68.0
PSO541G1127 Papaver somniferum HOM05D004792 ORTHO05D005789 3.1e-21 105.5 63 85.7
PSO675G5172 Papaver somniferum HOM05D004792 ORTHO05D005789 3.1e-21 105.5 63 85.7
QL05p038407 Quercus lobata HOM05D004792 ORTHO05D005789 3.1e-21 105.5 108 73.1
Dinv39793 Davidia involucrata HOM05D004792 ORTHO05D005789 4.1e-21 105.1 95 75.8
Hma1.2p1_0144F.1_g065030 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 4.1e-21 105.1 114 65.8
Medtr2g012520 Medicago truncatula HOM05D004792 ORTHO05D005789 4.1e-21 105.1 107 76.6
Sopen02g023670 Solanum pennellii HOM05D004792 ORTHO05D005789 4.1e-21 105.1 150 52.0
arahy.Tifrunner.gnm1.ann1.NPL2R3 Arachis hypogaea HOM05D004792 ORTHO05D005789 5.3e-21 104.8 154 61.0
ClCG01G022580 Citrullus lanatus HOM05D004792 ORTHO05D005789 5.3e-21 104.8 126 58.7
Gohir.A05G163900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 5.3e-21 104.8 116 62.9
Solyc02g078850.1 Solanum lycopersicum HOM05D004792 ORTHO05D005789 5.3e-21 104.8 150 51.3
TPR.G36753 Trifolium pratense HOM05D004792 ORTHO05D005789 6.9e-21 104.4 108 79.6
arahy.Tifrunner.gnm1.ann1.1RAI3Q Arachis hypogaea HOM05D004792 ORTHO05D005789 1.2e-20 103.6 153 56.9
COL.COLO4_31550 Corchorus olitorius HOM05D004792 ORTHO05D005789 1.2e-20 103.6 63 82.5
Gorai.009G171900 Gossypium raimondii HOM05D004792 ORTHO05D005789 1.2e-20 103.6 96 70.8
Phvul.006G190300 Phaseolus vulgaris HOM05D004792 ORTHO05D005789 1.2e-20 103.6 101 80.2
Thecc.06G195800 Theobroma cacao HOM05D004792 ORTHO05D005789 1.2e-20 103.6 63 81.0
Atru.chr10.1978 Acer truncatum HOM05D004792 ORTHO05D005789 1.5e-20 103.2 107 63.6
Gohir.D06G128800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 1.5e-20 103.2 108 64.8
Gorai.010G150300 Gossypium raimondii HOM05D004792 ORTHO05D005789 1.5e-20 103.2 108 64.8
Nitab4.5_0003223g0020 Nicotiana tabacum HOM05D004792 ORTHO05D005789 2.0e-20 102.8 128 54.7
Gohir.A06G123900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 2.6e-20 102.4 108 65.7
Gohir.D05G166800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 2.6e-20 102.4 99 70.7
TAR626G0583 Trochodendron aralioides HOM05D004792 ORTHO05D005789 2.6e-20 102.4 90 65.6
Duzib235G1303 Durio zibethinus HOM05D004792 ORTHO05D005789 3.4e-20 102.1 101 79.2
Nitab4.5_0003114g0080 Nicotiana tabacum HOM05D004792 ORTHO05D005789 3.4e-20 102.1 96 70.8
Potri.011G045000 Populus trichocarpa HOM05D004792 ORTHO05D005789 3.4e-20 102.1 106 71.7
Sc05g0007980 Simmondsia chinensis HOM05D004792 ORTHO05D005789 3.4e-20 102.1 131 51.9
CiPaw.09G160100 Carya illinoinensis HOM05D004792 ORTHO05D005789 5.9e-20 101.3 97 74.2
Nitab4.5_0006260g0010 Nicotiana tabacum HOM05D004792 ORTHO05D005789 5.9e-20 101.3 128 54.7
MBI02_g29949_MAGBIO Magnolia biondii HOM05D004792 ORTHO05D005789 7.7e-20 100.9 149 43.6
Ah.09g235930 Amaranthus hybridus HOM05D004792 ORTHO05D005789 1.0e-19 100.5 150 52.0
Lj1P1211T35 Lonicera japonica HOM05D004792 ORTHO05D005789 1.0e-19 100.5 143 63.6
Lj6g0023604 Lotus japonicus HOM05D004792 ORTHO05D005789 1.0e-19 100.5 96 78.1
Sabra11G0031300 Salix brachista HOM05D004792 ORTHO05D005789 1.0e-19 100.5 150 52.7
Aa31LG2G9370 Aethionema arabicum HOM05D004792 ORTHO05D005789 1.7e-19 99.8 96 74.0
CiPaw.10G120700 Carya illinoinensis HOM05D004792 ORTHO05D005789 1.7e-19 99.8 109 67.9
Cc02_g12670 Coffea canephora HOM05D004792 ORTHO05D005789 1.7e-19 99.8 108 58.3
Nitab4.5_0006694g0040 Nicotiana tabacum HOM05D004792 ORTHO05D005789 1.7e-19 99.8 146 54.8
ECA236G3117 Erigeron canadensis HOM05D004792 ORTHO05D005789 2.9e-19 99.0 145 56.6
Aqoxy1G02657 Aquilegia oxysepala HOM05D004792 ORTHO05D005789 3.8e-19 98.6 61 68.9
EL10Ac8g20634 Beta vulgaris HOM05D004792 ORTHO05D005789 3.8e-19 98.6 113 61.1
Cfa000375 Carpinus fangiana HOM05D004792 ORTHO05D005789 3.8e-19 98.6 63 79.4
Haze_06550 Corylus avellana HOM05D004792 ORTHO05D005789 3.8e-19 98.6 63 79.4
CAN.G132.12 Capsicum annuum HOM05D004792 ORTHO05D005789 5.0e-19 98.2 63 77.8
Ciclev10017067m.g Citrus clementina HOM05D004792 ORTHO05D005789 5.0e-19 98.2 61 80.3
Nn1g06696 Nelumbo nucifera HOM05D004792 ORTHO05D005789 5.0e-19 98.2 96 63.5
VMungo0540G0301 Vigna mungo HOM05D004792 ORTHO05D005789 5.0e-19 98.2 109 73.4
HanXRQChr04g0125741 Helianthus annuus HOM05D004792 ORTHO05D005789 8.5e-19 97.4 146 54.1
CAN.G1705.1 Capsicum annuum HOM05D004792 ORTHO05D005789 1.1e-18 97.1 111 67.6
Potri.004G036500 Populus trichocarpa HOM05D004792 ORTHO05D005789 1.1e-18 97.1 116 64.7
TAR624G0278 Trochodendron aralioides HOM05D004792 ORTHO05D005789 1.1e-18 97.1 121 61.2
TWI38G1637 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 1.4e-18 96.7 96 72.9
ATR0693G452 Amborella trichopoda HOM05D004792 ORTHO05D005789 1.9e-18 96.3 63 71.4
Lsat_1_v5_gn_7_19840 Lactuca sativa HOM05D004792 ORTHO05D005789 3.2e-18 95.5 145 56.6
Oeu005073.1 Olea europaea HOM05D004792 ORTHO05D005789 3.2e-18 95.5 146 63.7
TWI38G1643 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 4.2e-18 95.1 115 59.1
Medtr4g090520 Medicago truncatula HOM05D004792 ORTHO05D005789 5.5e-18 94.7 109 65.1
PGSC0003DMG400022371 Solanum tuberosum HOM05D004792 ORTHO05D005789 5.5e-18 94.7 110 59.1
Oeu026010.1 Olea europaea HOM05D004792 ORTHO05D005789 7.2e-18 94.4 143 59.4
TPR.G32413 Trifolium pratense HOM05D004792 ORTHO05D005789 1.2e-17 93.6 103 67.0
RcHm_v2.0_Chr5g0006831 Rosa chinensis HOM05D004792 ORTHO05D005789 1.6e-17 93.2 101 77.2
DCAR_008063 Daucus carota HOM05D004792 ORTHO05D005789 2.1e-17 92.8 58 82.8
Hma1.2p1_1363F.1_g278365 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 2.1e-17 92.8 62 79.0
Manes.16G022700 Manihot esculenta HOM05D004792 ORTHO05D005789 2.1e-17 92.8 145 59.3
Ca_00276_v3 Cicer arietinum L. HOM05D004792 ORTHO05D005789 2.7e-17 92.4 101 77.2
Prupe.4G039400 Prunus persica HOM05D004792 ORTHO05D005789 2.7e-17 92.4 95 80.0
Nn1g03946 Nelumbo nucifera HOM05D004792 ORTHO05D005789 4.7e-17 91.7 111 63.1
Psat1g207640 Pisum sativum HOM05D004792 ORTHO05D005789 1.4e-16 90.1 109 72.5
TAR627G0338 Trochodendron aralioides HOM05D004792 ORTHO05D005789 5.2e-16 88.2 86 50.0
vmacro22273 Vaccinium macrocarpon HOM05D004792 ORTHO05D005789 5.2e-16 88.2 105 61.0
GSVIVG01034659001 Vitis vinifera HOM05D004792 ORTHO05D005789 5.2e-16 88.2 63 61.9
Solyc10g009190.1 Solanum lycopersicum HOM05D004792 ORTHO05D005789 6.7e-16 87.8 96 64.6
Sopen10g004980 Solanum pennellii HOM05D004792 ORTHO05D005789 6.7e-16 87.8 96 64.6
Sabra04G0022200 Salix brachista HOM05D004792 ORTHO05D005789 1.1e-15 87.0 114 64.9
Migut.M01156 Erythranthe guttata HOM05D004792 ORTHO05D005789 2.0e-15 86.3 147 59.2
Os03g0676300 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 2.0e-15 86.3 108 66.7
MD10G1301000 Malus domestica HOM05D004792 ORTHO05D005789 5.7e-15 84.7 99 71.7
CDE05G1692 Ceratophyllum demersum HOM05D004792 ORTHO05D000003 9.7e-15 84.0 63 60.3
PGSC0003DMG400010821 Solanum tuberosum HOM05D004792 ORTHO05D005789 1.7e-14 83.2 128 55.5
HPP92_018770 Vanilla planifolia HOM05D004792 ORTHO05D005789 1.7e-14 83.2 142 59.9
Carub.0003s3326 Capsella rubella HOM05D010802 ORTHO05D012953 2.8e-14 82.4 131 48.9
Sed0018891 Sechium edule HOM05D004792 ORTHO05D005789 2.8e-14 82.4 63 66.7
Zm00001eb217390 Zea mays HOM05D004792 ORTHO05D005789 4.8e-14 81.6 63 66.7
MD05G1323200 Malus domestica HOM05D004792 ORTHO05D005789 1.1e-13 80.5 90 77.8
SalBow8G4104 Salvia bowleyana HOM05D004792 ORTHO05D005789 1.1e-13 80.5 99 62.6
FvH4_3g04450 Fragaria vesca HOM05D004792 ORTHO05D005789 2.4e-13 79.3 61 73.8
FAN11G1697 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.4e-13 79.3 61 73.8
FAN21G2112 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.4e-13 79.3 61 73.8
Os12g0634700 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 2.4e-13 79.3 131 36.6
AT1G61255 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 5.3e-13 78.2 158 43.0
BcaNung00850 Brassica carinata HOM05D004792 ORTHO05D005789 5.3e-13 78.2 134 50.0
Nn025s41563 Nelumbo nucifera HOM05D004792 ORTHO05D005789 5.3e-13 78.2 55 60.0
Thhalv10022963m.g Eutrema salsugineum HOM05D010802 ORTHO05D012953 7.0e-13 77.8 131 41.2
Sp3g32430 Schrenkiella parvula HOM05D010802 ORTHO05D012953 1.2e-12 77.0 139 36.0
CARHR051360 Cardamine hirsuta HOM05D004792 ORTHO05D005789 1.6e-12 76.6 62 61.3
SEGI_10462 Sequoiadendron giganteum HOM05D004792 ORTHO05D005789 1.6e-12 76.6 122 46.7
FAN25G3432 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.6e-12 75.9 98 70.4
CDE05G0177 Ceratophyllum demersum HOM05D000873 ORTHO05D002948 3.5e-12 75.5 60 66.7
FAN16G0443 Fragaria x ananassa HOM05D004792 ORTHO05D005789 7.7e-12 74.3 63 71.4
Zm00001eb032860 Zea mays HOM05D004792 ORTHO05D005789 7.7e-12 74.3 63 61.9
CARHR051350 Cardamine hirsuta HOM05D004792 ORTHO05D005789 1.0e-11 73.9 58 60.3
BcaC04g22871 Brassica carinata HOM05D010802 ORTHO05D012953 2.9e-11 72.4 134 39.6
BolC9t54342H Brassica oleracea HOM05D010802 ORTHO05D012953 2.9e-11 72.4 134 39.6
SGA_v2.0_scaffold100G29666 Striga asiatica HOM05D004792 ORTHO05D005789 6.5e-11 71.2 138 44.9
CDE11G0417 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 1.5e-10 70.1 57 64.9
Oeu026227.1 Olea europaea HOM05D004792 ORTHO05D005789 3.2e-10 68.9 96 58.3
BcaB07g31627 Brassica carinata HOM05D010802 ORTHO05D012953 4.2e-10 68.6 132 38.6
AL2G15070 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 9.4e-10 67.4 160 38.1
A09p12160 Brassica napus HOM05D010802 ORTHO05D012953 3.6e-09 65.5 132 37.1
C09p14380 Brassica napus HOM05D010802 ORTHO05D012953 3.6e-09 65.5 132 37.1
BraA09t36860Z Brassica rapa HOM05D010802 ORTHO05D012953 3.6e-09 65.5 132 37.1
Dinv40512 Davidia involucrata HOM05D004792 ORTHO05D005789 3.6e-09 65.5 75 77.3
Zm00001eb092170 Zea mays HOM05D004792 ORTHO05D005789 4.7e-09 65.1 99 40.4
CARHR109520 Cardamine hirsuta HOM05D010802 ORTHO05D012953 6.1e-09 64.7 131 35.1
CDE05G2245 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 6.1e-09 64.7 42 61.9
unitig_26.g9746 Utricularia gibba HOM05D004792 ORTHO05D005789 6.1e-09 64.7 135 34.8
Zm00001eb299240 Zea mays HOM05D004792 ORTHO05D005789 8.0e-09 64.3 63 52.4
C07p03440 Brassica napus HOM05D010802 ORTHO05D012953 1.0e-08 63.9 137 37.2
BolC7t40743H Brassica oleracea HOM05D010802 ORTHO05D012953 1.0e-08 63.9 137 37.2
AT2G19000 Arabidopsis thaliana HOM05D010802 ORTHO05D012953 2.3e-08 62.8 131 47.3
A07p01670 Brassica napus HOM05D010802 ORTHO05D012953 5.2e-08 61.6 137 36.5
BraA07t27969Z Brassica rapa HOM05D010802 ORTHO05D012953 5.2e-08 61.6 137 36.5
Rhsim13G0175100 Rhododendron simsii HOM05D004792 ORTHO05D005789 2.6e-07 59.3 76 65.8
MBI02_g23716_MAGBIO Magnolia biondii HOM05D004792 ORTHO05D005789 4.4e-07 58.5 120 36.7
BcaC06g36515 Brassica carinata HOM05D010802 ORTHO05D012953 7.5e-07 57.8 61 41.0
BcaB03g16697 Brassica carinata HOM05D010802 ORTHO05D012953 1.3e-06 57.0 137 36.5
Lalb_Chr18g0059871 Lupinus albus HOM05D004792 ORTHO05D005789 4.8e-06 55.1 62 71.0
Os07g0123900 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 8.2e-06 54.3 64 57.8


User provided reference genes

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