Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 3.3e-98 361.7 179 100.0
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 2.4e-93 345.5 179 96.1
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 1.9e-90 335.9 179 93.3
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 1.2e-89 333.2 179 93.3
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 1.4e-88 329.7 174 94.8
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 1.8e-88 329.3 179 91.6
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 2.2e-86 322.4 173 92.5
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 3.8e-86 321.6 179 89.4
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 8.4e-86 320.5 174 90.8
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 8.4e-86 320.5 170 92.9
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 2.4e-85 318.9 179 88.8
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 4.2e-85 318.2 173 90.8
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 6.6e-83 310.8 165 91.5
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 1.9e-82 309.3 174 89.1
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 6.2e-81 304.3 179 84.9
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 1.3e-73 280.0 154 83.8
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 9.0e-72 273.9 169 75.7
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 2.0e-71 272.7 142 92.3
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 1.7e-70 269.6 168 75.6
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 2.2e-70 269.2 169 75.7
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 6.4e-70 267.7 173 75.7
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 6.4e-70 267.7 171 73.7
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 5.4e-69 264.6 169 72.8
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 2.1e-68 262.7 164 75.0
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 2.7e-68 262.3 173 74.0
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 4.6e-68 261.5 167 73.7
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 1.0e-67 260.4 173 71.1
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 1.3e-67 260.0 158 76.6
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 1.8e-67 259.6 170 71.2
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 2.3e-67 259.2 154 76.6
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 2.3e-67 259.2 168 70.2
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 3.0e-67 258.8 158 75.9
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 5.1e-67 258.1 171 72.5
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 5.1e-67 258.1 170 70.6
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 6.7e-67 257.7 168 74.4
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 1.5e-66 256.5 167 73.1
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 1.9e-66 256.1 166 72.3
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 5.6e-66 254.6 166 72.9
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 5.6e-66 254.6 151 78.8
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 7.4e-66 254.2 162 74.7
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 7.4e-66 254.2 173 71.7
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 9.6e-66 253.8 152 74.3
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 9.6e-66 253.8 168 71.4
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 9.6e-66 253.8 175 70.9
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 9.6e-66 253.8 175 70.9
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 1.3e-65 253.4 173 71.7
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 2.1e-65 252.7 152 75.0
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 2.8e-65 252.3 151 74.8
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 6.2e-65 251.1 161 69.6
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 8.1e-65 250.8 175 70.9
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.1e-64 250.4 175 69.1
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 1.1e-64 250.4 161 70.8
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 1.8e-64 249.6 152 72.4
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 2.4e-64 249.2 165 69.7
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 5.3e-64 248.1 157 75.2
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 9.0e-64 247.3 151 76.2
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 9.0e-64 247.3 169 71.0
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 9.0e-64 247.3 175 70.3
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 1.2e-63 246.9 164 68.9
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 1.5e-63 246.5 172 67.4
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 1.5e-63 246.5 170 68.8
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.6e-63 245.7 175 68.6
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 3.4e-63 245.4 164 71.3
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 3.4e-63 245.4 157 71.3
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 4.5e-63 245.0 162 71.6
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 1.0e-62 243.8 153 73.2
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 1.7e-62 243.0 156 70.5
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 2.2e-62 242.7 153 74.5
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 2.9e-62 242.3 147 72.8
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 2.9e-62 242.3 214 59.3
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 4.9e-62 241.5 156 69.9
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 1.4e-61 240.0 170 68.2
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 2.5e-61 239.2 156 68.6
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 3.2e-61 238.8 163 66.3
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 4.2e-61 238.4 155 70.3
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 7.1e-61 237.7 161 67.1
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 7.1e-61 237.7 158 71.5
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 1.2e-60 236.9 171 64.9
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 1.6e-60 236.5 184 66.8
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 2.1e-60 236.1 163 62.6
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 2.7e-60 235.7 152 73.0
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 3.5e-60 235.3 152 69.7
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 6.0e-60 234.6 157 66.2
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 3.0e-59 232.3 152 67.8
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 8.7e-59 230.7 132 87.1
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 1.5e-58 229.9 164 68.3
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 2.5e-58 229.2 164 66.5
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 6.5e-54 214.5 181 62.4
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 7.1e-53 211.1 158 67.1
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 2.5e-50 202.6 124 73.4
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 8.2e-49 197.6 148 60.1
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 1.1e-48 197.2 120 75.0
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 9.0e-48 194.1 129 67.4
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 5.9e-47 191.4 119 71.4
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 1.0e-46 190.7 146 59.6
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 2.2e-46 189.5 102 90.2
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 5.5e-45 184.9 170 55.3
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 2.1e-44 183.0 156 59.6
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 3.0e-43 179.1 151 59.6
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 2.5e-42 176.0 161 52.8
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 4.7e-36 155.2 155 53.5
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 3.0e-35 152.5 119 68.9
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-34 149.4 92 71.7
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 7.4e-34 147.9 87 75.9
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.8e-32 143.3 108 71.3
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 4.7e-28 128.6 76 72.4
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 1.0e-19 100.9 79 69.6
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 2.7e-12 76.3 50 70.0
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 5.7e-10 68.6 43 69.8
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 1.1e-08 64.3 49 63.3
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 4.1e-08 62.4 43 67.4
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 1.2e-07 60.8 43 58.1
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 2.0e-07 60.1 75 44.0
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 1.3e-06 57.4 40 65.0
TPR.G26213 Trifolium pratense HOM05D006982 ORTHO05D008909 2.3e-06 56.6 47 55.3


User provided reference genes

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