Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 3.8e-73 278.1 142 100.0
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 3.0e-54 215.3 121 92.6
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 4.3e-53 211.5 121 90.9
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 8.2e-52 207.2 121 90.1
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 1.4e-48 196.4 121 86.0
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 2.1e-47 192.6 123 82.9
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 2.7e-47 192.2 121 81.8
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 2.7e-47 192.2 121 81.8
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 2.7e-47 192.2 121 81.8
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 6.1e-47 191.0 121 78.5
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 1.0e-46 190.3 121 81.0
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 1.0e-46 190.3 121 81.0
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 1.4e-46 189.9 121 78.5
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 1.8e-46 189.5 121 77.7
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 1.8e-46 189.5 121 77.7
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 1.8e-46 189.5 121 77.7
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 8.8e-46 187.2 121 78.5
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 1.3e-44 183.3 120 77.5
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 1.3e-44 183.3 120 77.5
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 2.6e-42 175.6 121 70.2
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 5.0e-41 171.4 121 72.7
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 3.2e-40 168.7 121 68.6
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 5.5e-40 167.9 109 75.2
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 9.4e-40 167.2 100 78.0
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 3.6e-39 165.2 96 79.2
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 6.1e-39 164.5 121 66.9
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 3.9e-38 161.8 119 64.7
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 3.9e-38 161.8 119 64.7
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 5.2e-38 161.4 111 66.7
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 8.8e-38 160.6 121 69.4
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 8.8e-38 160.6 121 68.6
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 1.1e-37 160.2 121 66.1
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 2.0e-37 159.5 118 63.6
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 3.3e-37 158.7 121 64.5
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 5.7e-37 157.9 122 63.9
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 9.7e-37 157.1 122 62.3
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 9.7e-37 157.1 98 72.4
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 1.7e-36 156.4 122 63.9
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 2.8e-36 155.6 120 65.0
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 3.7e-36 155.2 121 63.6
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 4.8e-36 154.8 105 69.5
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 4.8e-36 154.8 105 69.5
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 8.2e-36 154.1 106 67.9
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 1.4e-35 153.3 121 64.5
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 1.4e-35 153.3 117 65.0
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 3.1e-35 152.1 100 71.0
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 3.1e-35 152.1 100 71.0
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 3.1e-35 152.1 100 71.0
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 3.1e-35 152.1 100 71.0
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 3.1e-35 152.1 120 64.2
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 5.3e-35 151.4 115 62.6
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 5.3e-35 151.4 121 62.0
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 1.6e-34 149.8 122 61.5
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 2.0e-34 149.4 111 68.5
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 2.0e-34 149.4 117 62.4
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 2.6e-34 149.1 111 61.3
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 2.6e-34 149.1 120 63.3
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 4.5e-34 148.3 123 64.2
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 4.5e-34 148.3 95 73.7
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 1.0e-33 147.1 121 57.9
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 1.7e-33 146.4 121 61.2
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 2.9e-33 145.6 124 61.3
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 2.9e-33 145.6 124 61.3
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 1.1e-32 143.7 115 59.1
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 3.2e-32 142.1 100 64.0
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 3.2e-32 142.1 90 73.3
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 1.6e-31 139.8 121 57.9
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 2.1e-31 139.4 118 57.6
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 2.1e-31 139.4 117 61.5
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 2.1e-31 139.4 117 61.5
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 2.7e-31 139.0 117 58.1
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 3.6e-31 138.7 125 56.8
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 6.1e-31 137.9 108 58.3
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 6.1e-31 137.9 117 59.8
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 8.0e-31 137.5 117 60.7
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 8.0e-31 137.5 117 60.7
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 1.0e-30 137.1 118 60.2
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 2.3e-30 136.0 120 56.7
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 2.3e-30 136.0 103 61.2
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 3.0e-30 135.6 105 62.9
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 3.0e-30 135.6 96 64.6
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 5.2e-30 134.8 95 63.2
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 5.2e-30 134.8 122 60.7
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 6.7e-30 134.4 121 56.2
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 8.8e-30 134.0 121 56.2
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 8.8e-30 134.0 103 62.1
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 2.0e-29 132.9 121 57.0
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 2.6e-29 132.5 121 57.0
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 2.6e-29 132.5 121 57.9
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 4.4e-29 131.7 85 69.4
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 4.4e-29 131.7 102 62.7
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 4.4e-29 131.7 125 52.0
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 7.5e-29 131.0 95 61.1
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 9.7e-29 130.6 121 55.4
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 1.7e-28 129.8 96 63.5
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 1.7e-28 129.8 122 58.2
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 2.2e-28 129.4 117 57.3
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 4.8e-28 128.3 108 59.3
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 6.3e-28 127.9 121 53.7
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 8.2e-28 127.5 122 54.1
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 8.2e-28 127.5 121 56.2
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 8.2e-28 127.5 120 53.3
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 8.2e-28 127.5 103 58.3
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 1.1e-27 127.1 121 52.9
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 1.4e-27 126.7 120 58.3
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 2.4e-27 125.9 113 57.5
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 2.4e-27 125.9 116 51.7
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 4.1e-27 125.2 90 64.4
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 5.3e-27 124.8 121 52.9
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 5.3e-27 124.8 117 51.3
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 5.3e-27 124.8 124 50.0
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 7.0e-27 124.4 122 53.3
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 9.1e-27 124.0 121 51.2
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 9.1e-27 124.0 167 41.9
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 9.1e-27 124.0 100 58.0
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 1.2e-26 123.6 117 53.8
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 1.6e-26 123.2 121 52.1
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 1.6e-26 123.2 100 56.0
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 2.0e-26 122.9 112 52.7
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 2.7e-26 122.5 108 54.6
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 1.2e-23 113.6 65 78.5
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 3.6e-23 112.1 122 49.2
TAR633G2185 Trochodendron aralioides HOM05D004936 ORTHO05D005977 6.1e-23 111.3 117 48.7
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 4.0e-22 108.6 109 48.6
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 6.8e-22 107.8 72 70.8
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 8.8e-22 107.5 125 46.4
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 2.0e-21 106.3 125 47.2
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 2.0e-21 106.3 125 47.2
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 2.8e-20 102.4 65 70.8
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 7.0e-19 97.8 111 46.8
Sed0020346 Sechium edule HOM05D004936 ORTHO05D005977 3.5e-18 95.5 111 50.5
MD11G1064100 Malus domestica HOM05D004936 ORTHO05D005977 5.0e-17 91.7 62 64.5
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 1.9e-16 89.7 57 71.9
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 4.4e-13 78.6 121 36.4
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 3.5e-10 68.9 106 41.5
Nitab4.5_0001270g0210 Nicotiana tabacum HOM05D004936 ORTHO05D005977 3.8e-09 65.5 48 62.5
PRCOL_00001564 Prasinoderma coloniale HOM05D004936 ORTHO05D005977 5.0e-09 65.1 131 33.6
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 5.0e-09 65.1 44 70.5
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 5.0e-09 65.1 44 68.2
Dinv09658 Davidia involucrata HOM05D004936 ORTHO05D005977 1.9e-08 63.2 76 43.4
MCO05G723 Micromonas commoda HOM05D004936 ORTHO05D005977 1.6e-07 60.1 95 35.8
Cfa023961 Carpinus fangiana HOM05D004936 ORTHO05D005977 6.1e-07 58.2 91 34.1
TPR.G39290 Trifolium pratense HOM05D004936 ORTHO05D005977 1.0e-06 57.4 37 64.9
DCAR_027921 Daucus carota HOM05D004936 ORTHO05D005977 2.3e-06 56.2 32 65.6
Nn6g32762 Nelumbo nucifera HOM05D004936 ORTHO05D005977 2.3e-06 56.2 55 50.9
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 4.0e-06 55.5 28 82.1


User provided reference genes

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