Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 2.1e-155 552.4 281 100.0
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 3.0e-146 521.9 281 92.9
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 7.1e-140 500.7 284 90.1
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 1.6e-139 499.6 281 89.3
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 2.2e-133 479.2 281 87.2
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 3.2e-132 475.3 281 86.5
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 4.2e-132 474.9 281 86.1
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 4.6e-131 471.5 281 85.4
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 7.9e-131 470.7 281 85.4
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 1.3e-130 469.9 281 84.7
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 4.3e-129 464.9 281 83.3
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 5.3e-119 431.4 281 77.6
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 4.2e-116 421.8 281 78.6
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 9.7e-105 384.0 256 73.4
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 6.3e-104 381.3 243 75.3
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 2.6e-102 375.9 246 72.8
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 4.5e-102 375.2 244 73.8
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 4.2e-100 368.6 255 71.0
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 7.2e-100 367.9 255 71.0
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 2.1e-99 366.3 257 70.4
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 7.9e-99 364.4 252 71.4
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 3.0e-98 362.5 285 65.3
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 3.9e-98 362.1 246 72.0
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 1.1e-97 360.5 257 70.0
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.1e-97 360.5 286 65.4
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 1.1e-97 360.5 265 69.8
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 2.0e-97 359.8 253 70.0
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 2.6e-97 359.4 251 69.3
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 1.3e-96 357.1 247 72.9
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 2.8e-96 355.9 250 70.0
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 1.1e-95 354.0 247 71.3
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 2.4e-95 352.8 250 67.6
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 2.4e-95 352.8 248 68.5
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 2.4e-95 352.8 281 64.8
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 3.1e-95 352.4 255 68.2
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 3.1e-95 352.4 247 70.4
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 5.3e-95 351.7 249 69.1
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 1.5e-94 350.1 252 69.4
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 4.5e-94 348.6 272 64.7
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 5.9e-94 348.2 261 65.1
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 7.7e-94 347.8 261 65.1
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 1.7e-93 346.7 245 68.6
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 2.2e-93 346.3 249 67.5
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 2.2e-93 346.3 264 67.0
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 2.9e-93 345.9 265 67.2
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 5.0e-93 345.1 246 69.1
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 6.5e-93 344.7 249 67.9
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 6.5e-93 344.7 285 64.6
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 6.5e-93 344.7 250 67.6
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 1.1e-92 344.0 276 63.8
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.4e-92 343.6 291 61.5
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 3.2e-92 342.4 258 66.3
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 4.2e-92 342.0 287 63.8
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 9.4e-92 340.9 252 69.4
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 1.2e-91 340.5 263 66.9
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 2.7e-91 339.3 249 67.9
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 4.7e-91 338.6 286 62.6
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 1.8e-90 336.7 286 62.2
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 1.8e-90 336.7 250 69.2
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 2.3e-90 336.3 249 68.3
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 3.9e-90 335.5 265 62.3
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 5.2e-90 335.1 247 66.8
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 1.1e-89 334.0 252 66.3
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 1.5e-89 333.6 249 67.9
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 1.5e-89 333.6 269 63.6
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 2.0e-89 333.2 252 66.3
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 4.4e-89 332.0 249 65.1
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 1.3e-88 330.5 265 64.2
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 2.8e-88 329.3 279 60.9
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 5.3e-87 325.1 266 63.5
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 4.5e-86 322.0 249 64.7
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 5.9e-86 321.6 273 61.2
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 1.7e-85 320.1 268 60.8
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 2.9e-85 319.3 260 63.1
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 3.8e-85 318.9 290 58.3
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 5.0e-85 318.5 272 59.9
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.9e-84 316.6 226 69.5
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 5.5e-84 315.1 251 62.9
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 1.4e-82 310.5 244 63.1
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 1.4e-82 310.5 250 64.0
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 6.7e-82 308.1 225 69.3
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 6.7e-82 308.1 278 56.8
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.2e-81 307.4 281 59.1
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 2.0e-81 306.6 256 57.4
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 2.6e-81 306.2 245 62.4
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 4.4e-81 305.4 251 63.3
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 1.4e-79 300.4 210 71.4
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 1.8e-79 300.1 246 60.2
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 2.0e-78 296.6 257 59.1
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 3.5e-78 295.8 274 54.7
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 4.5e-78 295.4 278 57.9
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 4.5e-78 295.4 251 61.8
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 2.9e-77 292.7 252 62.3
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 1.8e-74 283.5 206 71.8
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 1.1e-68 264.2 245 54.7
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 6.6e-61 238.4 260 50.0
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 1.5e-60 237.3 243 49.4
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 4.0e-58 229.2 178 61.8
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 1.7e-56 223.8 239 48.1
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 6.4e-56 221.9 247 45.7
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 2.6e-49 199.9 159 64.2
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 5.8e-49 198.7 141 67.4
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.0e-45 188.0 178 57.9
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 7.3e-44 181.8 157 65.0
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 1.1e-42 177.9 144 63.2
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 1.8e-42 177.2 255 41.2
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 2.3e-42 176.8 268 39.2
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 5.1e-37 159.1 255 40.0
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 8.1e-35 151.8 241 38.6
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 1.7e-32 144.1 104 64.4
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 3.5e-30 136.3 107 61.7
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 3.2e-23 113.2 120 56.7
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 1.2e-17 94.7 73 54.8
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 1.5e-09 67.8 184 28.3
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 1.5e-09 67.8 227 26.0
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 2.6e-09 67.0 227 26.0
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 7.6e-09 65.5 184 26.6
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 7.6e-09 65.5 184 26.6
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 9.9e-09 65.1 236 26.7
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 1.3e-08 64.7 184 26.6
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 1.3e-08 64.7 184 26.6
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 1.3e-08 64.7 186 27.4
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 1.3e-08 64.7 186 26.9
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.7e-08 64.3 234 22.2
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 2.9e-08 63.5 184 26.1
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 3.8e-08 63.2 184 26.6
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 4.9e-08 62.8 184 25.5
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 1.1e-07 61.6 186 24.7
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 1.1e-07 61.6 186 24.7
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 4.6e-06 56.2 184 25.0


User provided reference genes

Program Settings