Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G41760 Arabidopsis thaliana HOM05D007137 ORTHO05D008982 6.4e-128 460.7 222 100.0
AL4G40070 Arabidopsis lyrata HOM05D007137 ORTHO05D008982 3.4e-121 438.3 222 95.5
Thhalv10017217m.g Eutrema salsugineum HOM05D007137 ORTHO05D008982 3.2e-119 431.8 222 93.2
Carub.0004s2404 Capsella rubella HOM05D007137 ORTHO05D008982 9.3e-119 430.3 222 92.3
CARHR136840 Cardamine hirsuta HOM05D007137 ORTHO05D008982 6.0e-118 427.6 222 92.3
Sp4g24030 Schrenkiella parvula HOM05D007137 ORTHO05D008982 4.9e-112 407.9 222 89.2
BraA03t11558Z Brassica rapa HOM05D007137 ORTHO05D008982 1.2e-110 403.3 235 83.8
C03p27930 Brassica napus HOM05D007137 ORTHO05D008982 1.6e-110 402.9 229 85.6
A03p23410 Brassica napus HOM05D007137 ORTHO05D008982 4.6e-110 401.4 235 83.0
BolC3t15165H Brassica oleracea HOM05D007137 ORTHO05D008982 3.9e-109 398.3 241 81.3
THA.LOC104818226 Tarenaya hassleriana HOM05D007137 ORTHO05D008982 5.5e-103 377.9 220 79.1
Actinidia09328 Actinidia chinensis HOM05D007137 ORTHO05D008982 1.8e-85 319.7 217 67.3
Cfa016812 Carpinus fangiana HOM05D007137 ORTHO05D008982 2.3e-85 319.3 222 63.1
Rhsim03G0024800 Rhododendron simsii HOM05D007137 ORTHO05D008982 3.9e-85 318.5 217 68.2
Ciclev10005859m.g Citrus clementina HOM05D007137 ORTHO05D008982 5.1e-85 318.2 211 69.7
Gohir.D09G118100 Gossypium hirsutum HOM05D007137 ORTHO05D008982 6.7e-85 317.8 216 66.2
Gorai.006G136400 Gossypium raimondii HOM05D007137 ORTHO05D008982 6.7e-85 317.8 216 66.2
Gohir.A09G122000 Gossypium hirsutum HOM05D007137 ORTHO05D008982 8.8e-85 317.4 212 67.0
Duzib093G1775 Durio zibethinus HOM05D007137 ORTHO05D008982 3.7e-83 312.0 213 63.8
Rhsim03G0024600 Rhododendron simsii HOM05D007137 ORTHO05D008982 3.7e-83 312.0 217 66.8
CSS0026997 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 4.8e-83 311.6 217 67.7
Dinv39605 Davidia involucrata HOM05D007137 ORTHO05D008982 4.8e-83 311.6 213 66.7
Sc13g0001720 Simmondsia chinensis HOM05D007137 ORTHO05D008982 1.8e-82 309.7 208 66.3
Aa31LG1G23770 Aethionema arabicum HOM05D007137 ORTHO05D008982 9.1e-82 307.4 174 84.5
Thecc.05G153200 Theobroma cacao HOM05D007137 ORTHO05D008982 1.6e-81 306.6 211 64.5
Migut.J01757 Erythranthe guttata HOM05D007137 ORTHO05D008982 3.5e-81 305.4 216 64.4
TWI74G1615 Tripterygium wilfordii HOM05D007137 ORTHO05D008982 3.5e-81 305.4 202 67.8
Hma1.2p1_2002F.1_g310780 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 4.5e-81 305.1 214 64.5
AUR62024453 Chenopodium quinoa HOM05D007137 ORTHO05D008982 5.9e-81 304.7 204 65.2
CiPaw.09G038400 Carya illinoinensis HOM05D007137 ORTHO05D008982 7.7e-81 304.3 220 62.3
vmacro07849 Vaccinium macrocarpon HOM05D007137 ORTHO05D008982 7.7e-81 304.3 208 67.8
Potri.006G051500 Populus trichocarpa HOM05D007137 ORTHO05D008982 1.3e-80 303.5 210 63.3
Lj5g0009390 Lotus japonicus HOM05D007137 ORTHO05D008982 3.8e-80 302.0 211 66.8
TAR369G0818 Trochodendron aralioides HOM05D007137 ORTHO05D008982 3.8e-80 302.0 214 64.5
CANSAT80G1960 Cannabis sativa HOM05D007137 ORTHO05D008982 8.5e-80 300.8 211 64.9
AUR62026042 Chenopodium quinoa HOM05D007137 ORTHO05D008982 8.5e-80 300.8 207 64.3
CANSAT80G0539 Cannabis sativa HOM05D007137 ORTHO05D008982 1.5e-79 300.1 211 64.9
EL10Ac3g07093 Beta vulgaris HOM05D007137 ORTHO05D008982 3.2e-79 298.9 204 65.2
Ca_26019_v3 Cicer arietinum L. HOM05D007137 ORTHO05D008982 3.2e-79 298.9 211 64.0
PGR004G0226 Punica granatum HOM05D007137 ORTHO05D008982 4.2e-79 298.5 212 61.3
Sopen04g007840 Solanum pennellii HOM05D007137 ORTHO05D008982 9.4e-79 297.4 209 61.2
TPR.G10636 Trifolium pratense HOM05D007137 ORTHO05D008982 1.6e-78 296.6 211 64.0
Solyc04g015760.4 Solanum lycopersicum HOM05D007137 ORTHO05D008982 2.1e-78 296.2 209 60.8
Phvul.007G252600 Phaseolus vulgaris HOM05D007137 ORTHO05D008982 3.6e-78 295.4 211 64.9
QL07p000577 Quercus lobata HOM05D007137 ORTHO05D008982 6.1e-78 294.7 203 66.5
Nn2g15218 Nelumbo nucifera HOM05D007137 ORTHO05D008982 8.0e-78 294.3 217 60.4
Nitab4.5_0010636g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 1.0e-77 293.9 213 59.2
PGSC0003DMG400027277 Solanum tuberosum HOM05D007137 ORTHO05D008982 1.4e-77 293.5 209 60.3
FAN09G1348 Fragaria x ananassa HOM05D007137 ORTHO05D008982 4.0e-77 292.0 215 62.3
Haze_19852 Corylus avellana HOM05D007137 ORTHO05D008982 5.2e-77 291.6 202 64.4
Eucgr.A02346 Eucalyptus grandis HOM05D007137 ORTHO05D008982 5.2e-77 291.6 209 62.7
FAN05G2215 Fragaria x ananassa HOM05D007137 ORTHO05D008982 5.2e-77 291.6 221 60.6
Cc06_g17570 Coffea canephora HOM05D007137 ORTHO05D008982 6.7e-77 291.2 215 60.5
FvH4_6g23850 Fragaria vesca HOM05D007137 ORTHO05D008982 1.1e-76 290.4 224 59.4
Peaxi162Scf00130g00019 Petunia axillaris HOM05D007137 ORTHO05D008982 1.1e-76 290.4 218 59.2
MSTRG.6429 Avicennia marina HOM05D007137 ORTHO05D008982 1.5e-76 290.0 219 61.6
Nitab4.5_0005195g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 1.5e-76 290.0 213 59.2
GSVIVG01033260001 Vitis vinifera HOM05D007137 ORTHO05D008982 1.5e-76 290.0 210 62.4
Prupe.7G059700 Prunus persica HOM05D007137 ORTHO05D008982 2.0e-76 289.7 211 61.6
RcHm_v2.0_Chr3g0482531 Rosa chinensis HOM05D007137 ORTHO05D008982 9.7e-76 287.3 215 61.4
Hund24707 Selenicereus undatus HOM05D007137 ORTHO05D008982 9.7e-76 287.3 206 62.1
Medtr7g034355 Medicago truncatula HOM05D007137 ORTHO05D008982 1.3e-75 287.0 211 62.6
Lalb_Chr21g0316491 Lupinus albus HOM05D007137 ORTHO05D008982 1.7e-75 286.6 215 60.0
Sabra06G0036100 Salix brachista HOM05D007137 ORTHO05D008982 4.8e-75 285.0 210 60.5
MD12G1074200 Malus domestica HOM05D007137 ORTHO05D008982 6.3e-75 284.6 213 61.5
Sed0021909 Sechium edule HOM05D007137 ORTHO05D008982 6.3e-75 284.6 212 60.8
Glyma.10G097900 Glycine max HOM05D007137 ORTHO05D008982 8.2e-75 284.3 211 63.5
HanXRQChr15g0491151 Helianthus annuus HOM05D007137 ORTHO05D008982 8.2e-75 284.3 208 63.0
Lsat_1_v5_gn_9_29000 Lactuca sativa HOM05D007137 ORTHO05D008982 8.2e-75 284.3 209 61.7
MELO3C009672.2 Cucumis melo HOM05D007137 ORTHO05D008982 3.1e-74 282.3 216 60.6
CsaV3_3G039290 Cucumis sativus L. HOM05D007137 ORTHO05D008982 4.1e-74 282.0 216 60.2
Oeu008913.1 Olea europaea HOM05D007137 ORTHO05D008982 5.3e-74 281.6 200 63.5
Oeu008915.1 Olea europaea HOM05D007137 ORTHO05D008982 5.3e-74 281.6 200 63.5
ECA247G4023 Erigeron canadensis HOM05D007137 ORTHO05D008982 1.9e-71 273.1 207 59.4
CAN.G1456.1 Capsicum annuum HOM05D007137 ORTHO05D008982 1.8e-69 266.5 185 62.7
Aqoxy1G00329 Aquilegia oxysepala HOM05D007137 ORTHO05D008982 1.2e-68 263.8 219 57.1
PSO384G0937 Papaver somniferum HOM05D007137 ORTHO05D008982 9.8e-68 260.8 208 60.1
Psat6g120120 Pisum sativum HOM05D007137 ORTHO05D008982 3.1e-66 255.8 162 71.0
arahy.Tifrunner.gnm1.ann1.QC7DP1 Arachis hypogaea HOM05D007137 ORTHO05D008982 2.7e-65 252.7 219 54.3
Ah.04g151610 Amaranthus hybridus HOM05D000942 ORTHO05D000918 7.7e-65 251.1 200 58.0
SalBow6G6768 Salvia bowleyana HOM05D007137 ORTHO05D008982 7.7e-65 251.1 239 53.1
CAN.G676.70 Capsicum annuum HOM05D007137 ORTHO05D008982 1.3e-64 250.4 192 58.9
Atru.BG.154.p Acer truncatum HOM05D007137 ORTHO05D008982 3.8e-64 248.8 212 57.1
MBI17_g01631_MAGBIO Magnolia biondii HOM05D007137 ORTHO05D008982 1.0e-61 240.7 221 53.8
Manes.09G022100 Manihot esculenta HOM05D007137 ORTHO05D008982 1.2e-60 237.3 209 54.5
Lju124C41G12 Lonicera japonica HOM05D007137 ORTHO05D008982 9.8e-60 234.2 215 53.0
arahy.Tifrunner.gnm1.ann1.F03MXT Arachis hypogaea HOM05D007137 ORTHO05D008982 1.7e-59 233.4 200 56.5
SGA_v2.0_scaffold105G30410 Striga asiatica HOM05D007137 ORTHO05D008982 1.4e-58 230.3 175 60.6
Os05g0387900 Oryza sativa ssp. japonica HOM05D007137 ORTHO05D008982 3.1e-58 229.2 212 51.9
Cpa.g.sc92.53 Carica papaya HOM05D007137 ORTHO05D008982 2.3e-56 223.0 174 59.8
DCAR_020492 Daucus carota HOM05D007137 ORTHO05D008982 3.3e-55 219.2 163 62.0
HPP92_001018 Vanilla planifolia HOM05D007137 ORTHO05D008982 6.1e-54 214.9 196 50.5
CSS0041211 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 1.4e-53 213.8 179 59.2
CDE02G1742 Ceratophyllum demersum HOM05D007137 ORTHO05D008982 1.8e-53 213.4 170 58.2
ATR0320G015 Amborella trichopoda HOM05D007137 ORTHO05D008982 4.4e-52 208.8 202 48.5
Mapoly0062s0037 Marchantia polymorpha HOM05D007137 ORTHO05D008982 7.0e-50 201.4 195 52.3
ClCG10G017100 Citrullus lanatus HOM05D007137 ORTHO05D008982 4.6e-49 198.7 237 43.9
FAN02G0118 Fragaria x ananassa HOM05D007137 ORTHO05D008982 8.6e-48 194.5 133 69.9
Pp3c8_16370 Physcomitrium patens HOM05D007137 ORTHO05D008982 1.5e-44 183.7 175 48.0
Hma1.2p1_2520F.1_g323835 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 8.3e-43 177.9 105 76.2
SMO353G0157 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 1.1e-42 177.6 200 45.5
SMO302G0006 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 9.2e-42 174.5 212 43.4
Rhsim03G0024200 Rhododendron simsii HOM05D007137 ORTHO05D008982 9.2e-26 121.3 161 39.8
Zm00001eb286980 Zea mays HOM05D007137 ORTHO05D008982 3.0e-24 116.3 86 58.1
VMungo0720G0821 Vigna mungo HOM05D007137 ORTHO05D008982 2.4e-21 106.7 97 51.5
CBR_g39180 Chara braunii HOM05D007137 ORTHO05D008982 8.9e-21 104.8 96 50.0
CSS0024811 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 2.9e-19 99.8 81 56.8
SEGI_00420 Sequoiadendron giganteum HOM05D007137 ORTHO05D008982 2.1e-14 83.6 86 41.9
Cre04.g217912 Chlamydomonas reinhardtii HOM05D007137 ORTHO05D008982 5.3e-13 79.0 87 42.5


User provided reference genes

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