Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 1.5e-113 412.9 214 100.0
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 8.1e-104 380.6 218 93.1
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 2.4e-103 379.0 215 92.6
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 1.0e-101 373.6 218 89.0
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 1.1e-97 360.1 214 90.2
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 7.4e-97 357.5 221 87.8
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 2.8e-96 355.5 220 86.4
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 2.8e-96 355.5 220 86.4
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 3.7e-96 355.1 218 87.6
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 8.2e-96 354.0 220 86.8
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 1.8e-95 352.8 220 86.4
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 2.2e-93 345.9 224 85.7
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 1.1e-92 343.6 224 85.3
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 8.7e-90 334.0 226 82.7
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 8.7e-90 334.0 226 82.7
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 1.5e-89 333.2 225 83.6
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 1.9e-89 332.8 218 83.5
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 2.5e-89 332.4 218 80.7
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 3.6e-83 312.0 218 76.6
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 7.7e-78 294.3 178 88.2
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 3.2e-68 262.3 207 69.1
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 2.1e-67 259.6 224 66.1
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 2.1e-67 259.6 205 68.8
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 5.2e-66 255.0 215 66.0
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 6.7e-66 254.6 209 67.5
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 8.8e-66 254.2 209 67.5
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 8.8e-66 254.2 205 67.8
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 1.1e-65 253.8 188 72.3
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 2.0e-65 253.1 199 68.3
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 1.7e-64 250.0 210 65.7
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 2.2e-64 249.6 211 66.4
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 3.7e-64 248.8 207 65.7
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 1.1e-63 247.3 204 66.7
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 1.4e-63 246.9 209 66.5
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 1.4e-63 246.9 213 66.7
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 3.1e-63 245.7 212 63.2
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 1.2e-62 243.8 212 63.7
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.2e-62 243.8 204 66.2
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 2.0e-62 243.0 204 65.2
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 2.0e-62 243.0 202 66.8
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 2.7e-62 242.7 204 66.2
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 5.9e-62 241.5 205 63.4
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 1.0e-61 240.7 193 66.3
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 1.3e-61 240.4 213 65.7
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.7e-61 240.0 202 65.8
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 1.7e-61 240.0 210 63.8
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.2e-61 239.6 199 65.8
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 3.8e-61 238.8 175 73.1
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 3.8e-61 238.8 212 61.8
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 3.8e-61 238.8 194 67.5
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 5.0e-61 238.4 203 64.0
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 6.5e-61 238.0 194 65.5
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 6.5e-61 238.0 202 63.4
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 6.5e-61 238.0 213 63.8
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 1.5e-60 236.9 205 62.9
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.9e-60 236.5 225 61.8
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 3.2e-60 235.7 199 64.3
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 7.2e-60 234.6 193 64.8
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 7.2e-60 234.6 218 62.8
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 9.4e-60 234.2 202 64.4
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 1.2e-59 233.8 220 61.4
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 1.6e-59 233.4 207 63.3
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.6e-59 233.4 221 60.6
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 4.7e-59 231.9 212 62.7
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 4.7e-59 231.9 243 55.6
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 4.7e-59 231.9 211 62.1
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 1.0e-58 230.7 211 62.1
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 1.8e-58 229.9 193 65.8
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 2.3e-58 229.6 202 61.9
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 5.2e-58 228.4 208 59.6
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.5e-57 226.9 221 59.3
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 1.5e-57 226.9 213 61.0
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 1.5e-57 226.9 217 59.4
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 1.5e-57 226.9 181 68.5
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 2.0e-57 226.5 172 69.2
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 2.6e-57 226.1 215 59.5
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.6e-57 226.1 180 67.8
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 3.4e-57 225.7 202 60.9
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 4.4e-57 225.3 211 61.1
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 9.8e-57 224.2 196 64.8
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.3e-56 223.8 188 66.5
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 2.2e-56 223.0 198 63.1
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 2.8e-56 222.6 205 62.0
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 2.8e-56 222.6 173 65.9
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 3.7e-56 222.2 199 61.3
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 8.3e-56 221.1 194 59.8
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 1.1e-55 220.7 221 58.8
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 1.1e-55 220.7 206 59.2
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 1.1e-55 220.7 206 62.6
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 1.1e-55 220.7 208 61.5
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 3.1e-55 219.2 151 72.8
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 4.1e-55 218.8 219 58.4
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 5.4e-55 218.4 176 67.6
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 5.4e-55 218.4 185 65.4
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 5.4e-55 218.4 148 77.0
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 7.0e-55 218.0 199 61.3
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 9.1e-55 217.6 167 70.7
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 2.7e-54 216.1 229 55.9
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 4.5e-54 215.3 151 76.2
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 4.5e-54 215.3 197 59.4
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 1.0e-53 214.2 154 76.6
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 1.7e-53 213.4 202 60.4
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 1.7e-53 213.4 141 75.2
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 2.2e-53 213.0 141 78.7
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 2.2e-53 213.0 157 73.2
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 3.8e-53 212.2 193 61.7
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 4.2e-52 208.8 190 61.6
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 5.5e-52 208.4 198 59.6
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 8.8e-50 201.1 181 63.5
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 1.2e-49 200.7 162 67.9
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 5.7e-49 198.4 203 56.7
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 7.5e-49 198.0 203 56.7
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 9.8e-49 197.6 177 62.7
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 2.8e-48 196.1 201 60.7
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 6.3e-48 194.9 130 73.1
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 1.1e-47 194.1 210 54.8
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 1.1e-47 194.1 205 59.5
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 2.4e-47 193.0 194 58.2
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 3.1e-47 192.6 140 72.9
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 7.3e-44 181.4 129 72.9
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 4.7e-43 178.7 156 61.5
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 3.0e-42 176.0 130 69.2
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 1.5e-41 173.7 136 66.9
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 9.8e-41 171.0 130 67.7
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 2.9e-40 169.5 136 66.2
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 2.9e-40 169.5 134 64.9
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 1.2e-38 164.1 207 48.3
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 2.2e-32 143.3 78 91.0
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 2.2e-32 143.3 78 91.0
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.4e-31 140.6 121 62.8
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 9.2e-31 137.9 212 43.4
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 1.3e-29 134.0 212 45.3
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 1.1e-28 131.0 141 53.9
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 4.0e-26 122.5 129 53.5
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 6.6e-21 105.1 69 76.8
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 9.9e-17 91.3 70 70.0
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 8.4e-16 88.2 73 65.8
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 2.8e-11 73.2 139 38.8
CARHR073520 Cardamine hirsuta HOM05D005382 ORTHO05D006795 5.2e-10 68.9 42 81.0
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 5.2e-10 68.9 45 77.8


User provided reference genes

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