Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 0.0e+00 1531.5 831 100.0
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 0.0e+00 1407.9 831 93.0
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 0.0e+00 1327.0 801 89.1
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 0.0e+00 1273.5 833 83.1
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 0.0e+00 1228.4 844 80.7
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 0.0e+00 1228.4 844 80.7
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 0.0e+00 1218.0 840 80.7
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 0.0e+00 1208.7 833 80.1
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 0.0e+00 1207.6 846 79.8
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 0.0e+00 1207.6 846 79.8
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 0.0e+00 1156.7 840 77.0
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 5.4e-305 1050.8 678 83.0
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 2.1e-296 1022.3 679 82.5
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 2.4e-292 1008.8 845 68.5
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 8.2e-285 983.8 613 87.3
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 2.6e-259 899.0 841 58.9
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 1.2e-256 890.2 842 59.4
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 8.0e-256 887.5 841 59.6
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 5.2e-255 884.8 839 59.2
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 1.1e-254 883.6 847 58.8
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 5.7e-254 881.3 840 59.0
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 9.7e-254 880.6 840 61.0
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 2.2e-253 879.4 839 58.6
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 4.8e-253 878.2 841 57.2
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 6.3e-253 877.9 852 59.2
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 3.1e-252 875.5 839 59.7
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 4.1e-252 875.2 840 58.8
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 5.3e-252 874.8 836 59.2
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 7.0e-252 874.4 840 57.9
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 7.0e-252 874.4 841 57.1
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 1.0e-250 870.5 843 59.4
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 2.9e-250 869.0 845 59.6
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 1.2e-248 863.6 843 58.2
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 1.4e-247 860.1 837 60.5
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 1.4e-247 860.1 833 58.0
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 2.6e-246 855.9 835 58.1
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 3.4e-246 855.5 843 57.8
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 1.3e-245 853.6 841 58.5
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 2.8e-245 852.4 846 56.7
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 3.7e-245 852.0 838 57.8
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 3.7e-245 852.0 839 57.8
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 4.8e-245 851.7 839 57.9
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 5.4e-244 848.2 841 56.7
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 9.1e-244 847.4 843 57.5
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 1.2e-243 847.0 841 56.5
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 2.0e-243 846.3 842 59.3
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 7.7e-243 844.3 843 57.2
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 2.2e-242 842.8 814 56.5
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.6e-240 835.5 841 56.1
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 8.0e-240 834.3 840 56.1
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.3e-239 832.8 844 58.9
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.0e-238 829.7 845 58.2
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 2.8e-237 825.9 839 55.9
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 2.8e-237 825.9 834 56.0
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 3.7e-237 825.5 838 55.6
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 5.4e-236 821.6 839 55.3
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 4.5e-235 818.5 838 56.2
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 2.3e-234 816.2 838 54.8
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.9e-234 815.8 829 55.4
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 2.9e-234 815.8 849 54.8
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 7.3e-233 811.2 830 55.2
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 9.5e-233 810.8 835 54.7
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 4.7e-232 808.5 838 54.5
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.6e-230 802.7 829 54.9
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.4e-230 802.0 843 57.9
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 4.1e-228 795.4 823 54.7
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.4e-228 795.0 839 54.4
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 5.4e-228 795.0 845 54.1
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.2e-227 793.9 851 55.3
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 1.2e-227 793.9 835 54.3
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 1.2e-227 793.9 819 55.9
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 5.9e-227 791.6 831 54.5
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 3.3e-225 785.8 845 53.7
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 8.0e-224 781.2 835 54.0
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.8e-223 780.0 842 53.3
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 8.9e-223 777.7 834 53.2
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 3.4e-222 775.8 834 54.2
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.4e-222 775.4 841 52.7
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 1.9e-220 770.0 845 53.3
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 3.5e-219 765.8 871 53.5
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 3.9e-218 762.3 832 52.3
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 5.0e-218 761.9 832 54.1
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.1e-217 760.8 844 52.3
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 8.1e-216 754.6 861 51.1
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 5.2e-215 751.9 860 52.3
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.0e-210 737.6 846 50.1
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.9e-209 733.4 770 54.5
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 3.4e-206 722.6 844 49.8
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.7e-205 720.3 887 50.2
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.7e-202 710.3 838 49.6
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.1e-201 707.6 833 49.7
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 3.4e-198 696.0 940 45.6
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.1e-195 686.8 833 51.1
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 1.3e-194 684.1 826 48.2
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.1e-193 681.0 833 49.3
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 2.8e-192 676.4 799 49.3
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 4.8e-192 675.6 855 47.5
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 9.9e-182 641.3 843 46.7
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 3.8e-181 639.4 827 48.9
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.8e-167 594.0 840 45.2
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.1e-163 578.9 556 56.5
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.1e-153 548.1 607 52.6
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 2.6e-145 520.4 895 37.2
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.9e-142 509.2 602 48.0
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 1.7e-133 481.1 818 38.6
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 8.5e-133 478.8 858 38.0
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.4e-130 471.5 451 56.5
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 2.2e-128 464.2 831 39.0
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 6.5e-125 452.6 381 65.9
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.1e-111 408.7 386 59.3
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 4.0e-106 390.2 932 31.0
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.7e-104 384.8 485 45.8
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.4e-103 380.9 444 49.5
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.2e-98 363.2 310 57.7
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.8e-91 340.9 450 46.9
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 1.9e-87 328.2 445 44.5
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 2.7e-86 324.3 293 59.7
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 3.3e-76 290.8 337 48.1
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 1.9e-71 275.0 200 67.5
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 2.4e-71 274.6 329 50.8
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 6.0e-70 270.0 234 63.7
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 7.4e-68 263.1 244 60.7
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 2.8e-67 261.2 281 54.8
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 8.1e-67 259.6 230 56.5
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 7.4e-60 236.5 910 27.9
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 8.4e-56 223.0 195 61.0
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 9.3e-55 219.5 273 51.6
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 6.7e-53 213.4 191 67.0
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 3.1e-50 204.5 270 52.2
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 3.1e-50 204.5 150 66.0
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 1.4e-47 195.7 272 50.0
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.6e-46 192.2 279 48.7
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 6.7e-45 186.8 214 50.9
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 2.7e-38 164.9 172 56.4
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.8e-37 162.2 168 56.0
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 1.8e-37 162.2 206 48.5
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 6.7e-37 160.2 198 56.6
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 2.0e-36 158.7 201 55.7
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.8e-34 152.1 152 52.0
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 3.2e-31 141.4 118 66.9
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 6.1e-30 137.1 635 25.2
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.2e-27 128.6 178 40.4
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 9.1e-26 123.2 514 23.9
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.6e-25 122.5 609 25.3
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 1.0e-24 119.8 95 54.7
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 3.6e-22 111.3 151 47.0
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 4.7e-22 110.9 102 53.9
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.6e-20 105.1 119 47.1
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.5e-17 94.7 107 47.7
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 6.1e-14 84.0 76 59.2
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 1.6e-09 69.3 55 54.5
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.7e-09 68.6 63 46.0
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.7e-08 65.9 50 56.0
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 2.5e-07 62.0 55 49.1
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 1.6e-06 59.3 65 47.7


User provided reference genes

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