Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 0.0e+00 1769.2 1017 100.0
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 0.0e+00 1603.6 1015 90.0
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 0.0e+00 1445.6 1028 83.0
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 0.0e+00 1407.1 1026 79.9
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 0.0e+00 1405.2 1020 80.1
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 0.0e+00 1397.1 925 83.0
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 0.0e+00 1327.4 1023 76.5
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 0.0e+00 1326.2 923 80.6
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 0.0e+00 1323.5 931 79.7
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 0.0e+00 1319.3 1033 75.8
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 0.0e+00 1274.2 950 77.2
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 0.0e+00 1255.4 940 76.9
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 0.0e+00 1223.8 966 71.1
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1087.8 1040 62.0
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 7.1e-302 1040.8 1054 58.0
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 7.3e-299 1030.8 1015 58.2
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 1.2e-298 1030.0 1061 59.5
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 1.4e-297 1026.5 1014 58.7
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 5.2e-297 1024.6 1022 59.2
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 6.8e-297 1024.2 956 61.7
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 4.4e-296 1021.5 942 63.9
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 4.4e-296 1021.5 953 62.3
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 5.8e-296 1021.1 948 62.4
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 5.8e-296 1021.1 951 62.7
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 7.6e-296 1020.8 980 62.7
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 9.9e-296 1020.4 1022 59.1
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 9.9e-296 1020.4 942 63.9
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 4.9e-295 1018.1 1022 59.6
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 4.2e-294 1015.0 1029 59.4
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 2.3e-292 1009.2 1023 60.4
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 3.9e-292 1008.4 1019 59.9
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.5e-291 1006.5 906 63.0
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 1.5e-291 1006.5 955 61.9
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 4.3e-291 1005.0 1022 59.7
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 7.3e-291 1004.2 1042 58.8
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 9.6e-291 1003.8 952 61.6
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 1.6e-290 1003.0 1072 56.4
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.8e-289 999.6 1058 57.8
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 8.4e-287 990.7 1039 57.3
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 1.1e-286 990.3 955 60.3
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 1.9e-286 989.6 941 61.4
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 3.5e-285 985.3 948 61.0
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 1.0e-284 983.8 954 61.1
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 3.9e-284 981.9 950 59.8
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 5.1e-284 981.5 906 61.3
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 1.6e-282 976.5 858 64.8
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 3.6e-282 975.3 1030 57.4
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 6.9e-281 971.1 967 58.1
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 1.5e-280 969.9 1014 57.2
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 3.4e-280 968.8 918 59.7
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.7e-279 966.5 916 61.0
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 8.4e-279 964.1 1070 54.4
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 1.9e-278 963.0 952 58.8
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.2e-277 960.3 941 59.8
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 2.1e-277 959.5 1019 56.1
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 7.9e-277 957.6 935 59.3
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 1.3e-276 956.8 952 59.8
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 1.5e-275 953.4 987 57.4
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 4.3e-275 951.8 1027 55.5
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 7.4e-275 951.0 961 59.0
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 8.1e-274 947.6 958 58.1
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 1.4e-273 946.8 959 59.2
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 2.4e-273 946.0 987 56.8
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.0e-273 945.3 958 59.5
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 5.8e-272 941.4 967 58.0
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 1.3e-271 940.3 1022 57.5
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 9.3e-270 934.1 1019 57.4
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 4.6e-269 931.8 991 56.6
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 4.6e-269 931.8 1014 57.0
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 1.8e-268 929.9 1039 56.3
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 3.9e-268 928.7 1035 53.4
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 3.1e-265 919.1 1035 54.2
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 4.1e-265 918.7 978 55.6
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.6e-264 916.0 1035 55.0
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 1.7e-263 913.3 1027 54.9
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 2.2e-263 912.9 1022 55.6
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.9e-263 912.5 880 58.8
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 2.9e-263 912.5 1013 54.3
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 7.2e-262 907.9 1189 50.0
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 7.2e-262 907.9 1024 53.2
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.3e-260 903.7 1047 54.4
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 2.4e-257 892.9 1021 56.2
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 5.3e-257 891.7 960 57.3
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 3.9e-252 875.5 951 55.2
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.5e-251 873.6 1030 51.7
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 9.7e-251 870.9 1049 54.2
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 9.7e-251 870.9 876 58.4
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 4.8e-250 868.6 952 54.7
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 3.4e-248 862.4 974 52.9
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 2.6e-240 836.3 899 55.4
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 5.9e-240 835.1 883 55.4
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 4.0e-236 822.4 1026 50.9
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 6.7e-236 821.6 969 51.6
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 1.7e-234 817.0 573 79.2
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 2.8e-234 816.2 1030 48.0
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 4.5e-232 808.9 914 52.0
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 7.5e-227 791.6 1018 50.3
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.1e-225 787.7 715 63.4
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 3.8e-223 779.2 886 55.2
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 1.4e-220 770.8 1030 47.8
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 3.9e-207 726.1 691 61.4
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.7e-202 710.7 624 62.5
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 2.9e-202 709.9 593 65.1
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 2.1e-189 667.2 949 47.1
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.1e-188 664.8 623 59.6
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 1.4e-185 654.4 924 45.0
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 2.4e-177 627.1 952 42.9
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 3.5e-176 623.2 1013 41.9
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 1.1e-169 601.7 998 40.7
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 3.9e-151 540.0 564 58.5
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 5.3e-148 529.6 881 42.5
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 4.5e-147 526.6 751 47.3
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 5.0e-146 523.1 1099 35.8
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 7.2e-145 519.2 552 55.8
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 1.8e-143 514.6 501 58.3
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 1.7e-130 471.5 930 36.1
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 2.2e-117 427.9 370 63.8
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 4.2e-105 387.1 1065 33.1
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.7e-91 341.3 371 52.3
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 3.3e-73 281.2 753 32.8
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 6.2e-72 276.9 633 35.1
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 1.7e-69 268.9 514 39.5
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 8.4e-69 266.5 716 30.9
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.0e-66 259.6 330 48.5
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 9.0e-63 246.5 201 66.2
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 6.9e-55 220.3 221 56.1
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.5e-49 202.6 179 62.6
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 5.8e-46 190.7 248 48.0
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 1.2e-43 183.0 195 57.9
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 9.7e-33 146.7 161 50.9
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 5.3e-31 141.0 175 51.4
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 6.1e-27 127.5 124 58.9
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 1.5e-25 122.9 130 53.1
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 2.1e-19 102.4 193 58.5
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 1.4e-18 99.8 130 53.1
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 3.0e-18 98.6 84 56.0
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 6.7e-18 97.4 51 88.2
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 8.8e-18 97.1 63 74.6
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.2e-14 86.7 204 44.6
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.4e-12 79.7 81 49.4
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 2.3e-10 72.4 45 75.6
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 2.3e-10 72.4 45 75.6
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 8.8e-10 70.5 45 73.3
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 8.8e-10 70.5 45 73.3
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 2.0e-09 69.3 45 71.1
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.2e-06 60.1 38 73.7


User provided reference genes

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