Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G50650 Arabidopsis thaliana HOM05D012777 ORTHO05D009905 1.7e-75 286.2 175 100.0
AL1G58320 Arabidopsis lyrata HOM05D012777 ORTHO05D009905 2.6e-63 245.7 175 84.0
Carub.0001s3969 Capsella rubella HOM05D012777 ORTHO05D009905 2.0e-52 209.5 176 77.8
Thhalv10012178m.g Eutrema salsugineum HOM05D012777 ORTHO05D009905 2.2e-51 206.1 179 78.2
CARHR040700 Cardamine hirsuta HOM05D012777 ORTHO05D009905 3.8e-51 205.3 176 80.1
C06p05910 Brassica napus HOM05D012777 ORTHO05D009905 2.9e-43 179.1 175 69.7
A06p02970 Brassica napus HOM05D012777 ORTHO05D009905 8.6e-43 177.6 175 69.1
BolC6t35704H Brassica oleracea HOM05D012777 ORTHO05D009905 1.9e-42 176.4 175 69.1
BraA06t23503Z Brassica rapa HOM05D012777 ORTHO05D009905 4.2e-42 175.3 172 69.2
BcaC08g43242 Brassica carinata HOM05D012777 ORTHO05D009905 2.1e-41 172.9 175 69.1
Sp1g37480 Schrenkiella parvula HOM05D012777 ORTHO05D009905 7.5e-31 137.9 129 73.6
THA.LOC104798770 Tarenaya hassleriana HOM05D012777 ORTHO05D009905 7.5e-23 111.3 152 59.9
Potri.001G355700 Populus trichocarpa HOM05D008051 ORTHO05D009905 2.3e-11 73.2 103 42.7
TWI39G0594 Tripterygium wilfordii HOM05D008051 ORTHO05D009905 4.3e-10 68.9 110 37.3
Aa31LG10G3680 Aethionema arabicum HOM05D012777 ORTHO05D009905 2.1e-09 66.6 104 60.6
PGR083G0962 Punica granatum HOM05D008051 ORTHO05D009905 1.4e-08 63.9 103 34.0
RcHm_v2.0_Chr5g0041151 Rosa chinensis HOM05D008051 ORTHO05D009905 1.8e-08 63.5 76 43.4
COL.COLO4_09713 Corchorus olitorius HOM05D008051 ORTHO05D009905 3.1e-08 62.8 51 58.8
Prupe.4G221300 Prunus persica HOM05D008051 ORTHO05D009905 3.1e-08 62.8 96 38.5
Ciclev10010548m.g Citrus clementina HOM05D008051 ORTHO05D009905 5.2e-08 62.0 72 44.4
Sabra11G0071300 Salix brachista HOM05D008051 ORTHO05D009905 5.2e-08 62.0 88 40.9
Cpa.g.sc12.286 Carica papaya HOM05D008051 ORTHO05D009905 8.9e-08 61.2 90 44.4
Eucgr.F00712 Eucalyptus grandis HOM05D008051 ORTHO05D009905 2.0e-07 60.1 77 40.3
Thecc.07G029800 Theobroma cacao HOM05D008051 ORTHO05D009905 2.0e-07 60.1 73 41.1
Gohir.A01G083500 Gossypium hirsutum HOM05D008051 ORTHO05D009905 3.4e-07 59.3 51 54.9
Solyc03g116450.1 Solanum lycopersicum HOM05D008051 ORTHO05D009905 3.4e-07 59.3 97 37.1
CiPaw.11G193500 Carya illinoinensis HOM05D008051 ORTHO05D009905 4.4e-07 58.9 120 51.7
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 5.8e-07 58.5 124 51.6
Gohir.D01G070000 Gossypium hirsutum HOM05D008051 ORTHO05D009905 9.9e-07 57.8 51 52.9
Gorai.002G092500 Gossypium raimondii HOM05D008051 ORTHO05D009905 9.9e-07 57.8 51 52.9
BcaB07g33505 Brassica carinata HOM05D032137 ORTHO05D009905 2.2e-06 56.6 49 79.6
MD11G1211300 Malus domestica HOM05D008051 ORTHO05D009905 2.2e-06 56.6 114 33.3
Haze_09724 Corylus avellana HOM05D008051 ORTHO05D009905 3.8e-06 55.8 95 37.9
Haze_21342 Corylus avellana HOM05D008051 ORTHO05D009905 3.8e-06 55.8 95 36.8
Sabra11G0072200 Salix brachista HOM05D008051 ORTHO05D009905 3.8e-06 55.8 78 42.3
CANSAT11G0109 Cannabis sativa HOM05D008051 ORTHO05D009905 4.9e-06 55.5 108 55.6
Nn7g36860 Nelumbo nucifera HOM05D008051 ORTHO05D009905 4.9e-06 55.5 64 40.6
QL08p007021 Quercus lobata HOM05D008051 ORTHO05D009905 4.9e-06 55.5 107 33.6
Rhsim06G0068300 Rhododendron simsii HOM05D008051 ORTHO05D009905 6.4e-06 55.1 91 60.4
SGA_v2.0_scaffold196G40892 Striga asiatica HOM05D008051 ORTHO05D009905 6.4e-06 55.1 68 41.2
EL10Ac4g07747 Beta vulgaris HOM05D008051 ORTHO05D009905 8.4e-06 54.7 70 37.1
vmacro21377 Vaccinium macrocarpon HOM05D008051 ORTHO05D009905 8.4e-06 54.7 88 60.2


User provided reference genes

Program Settings