Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.9e-245 852.0 421 100.0
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 6.3e-233 810.4 421 95.7
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 1.1e-232 809.7 419 95.2
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 4.1e-232 807.7 421 94.8
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 5.5e-229 797.3 421 92.9
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.6e-228 795.8 421 92.4
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 3.6e-228 794.7 421 92.2
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 6.1e-228 793.9 421 91.9
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 3.0e-227 791.6 421 91.9
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 1.5e-226 789.3 421 91.0
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 1.5e-226 789.3 421 91.7
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 1.7e-225 785.8 421 92.4
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 3.3e-218 761.5 418 88.8
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 1.0e-211 740.0 418 85.9
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 6.5e-198 694.1 418 80.1
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 1.9e-197 692.6 418 80.6
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 3.6e-196 688.3 418 78.9
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 3.6e-196 688.3 418 79.4
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.4e-195 686.4 416 80.0
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 3.0e-195 685.3 418 78.7
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 5.2e-195 684.5 417 78.7
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 6.8e-195 684.1 418 78.7
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.5e-194 682.9 418 78.0
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 2.6e-194 682.2 417 79.4
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 2.6e-194 682.2 421 77.4
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 7.5e-194 680.6 418 78.0
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 9.8e-194 680.2 418 77.8
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.3e-193 679.9 421 77.4
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.2e-193 679.1 418 78.7
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 2.2e-193 679.1 413 79.2
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 3.7e-193 678.3 416 77.2
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.4e-192 675.6 434 76.0
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 3.1e-192 675.2 418 77.8
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 3.1e-192 675.2 418 77.3
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.4e-192 674.5 434 75.8
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.2e-191 673.3 419 77.6
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 2.0e-191 672.5 421 81.5
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.0e-191 672.5 418 76.3
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.7e-191 672.2 417 77.9
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 3.5e-191 671.8 439 74.9
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.3e-190 669.8 421 75.5
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 2.3e-190 669.1 418 76.3
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 2.9e-190 668.7 418 77.0
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 2.9e-190 668.7 418 77.0
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 3.8e-190 668.3 417 76.0
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 3.8e-190 668.3 418 76.3
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 3.8e-190 668.3 418 76.1
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 3.8e-190 668.3 417 77.2
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.0e-190 667.9 434 75.3
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 5.0e-190 667.9 417 77.2
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 5.0e-190 667.9 418 76.8
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 1.1e-189 666.8 417 75.5
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 1.1e-189 666.8 418 76.6
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.5e-189 665.6 418 75.6
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 3.3e-189 665.2 415 77.1
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.3e-189 664.1 418 76.3
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 7.3e-189 664.1 418 76.3
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 7.3e-189 664.1 418 76.3
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 9.5e-189 663.7 418 76.3
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.6e-188 662.9 418 75.8
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 2.8e-188 662.1 416 75.5
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 2.8e-188 662.1 434 75.8
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 2.8e-188 662.1 418 75.4
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 3.6e-188 661.8 418 76.6
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.7e-188 661.4 417 76.7
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 4.7e-188 661.4 418 76.3
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 6.1e-188 661.0 418 76.3
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 8.0e-188 660.6 413 75.8
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 8.0e-188 660.6 418 76.8
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.8e-187 659.4 418 75.6
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 1.8e-187 659.4 418 75.1
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 2.3e-187 659.1 418 76.1
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 2.3e-187 659.1 418 76.1
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 3.0e-187 658.7 418 74.4
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 5.2e-187 657.9 418 75.6
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 5.2e-187 657.9 417 75.1
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 6.8e-187 657.5 438 73.5
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 8.9e-187 657.1 418 75.4
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.2e-186 656.8 417 76.0
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 1.5e-186 656.4 417 75.8
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 2.0e-186 656.0 418 75.1
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 2.0e-186 656.0 418 76.1
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 3.4e-186 655.2 416 75.0
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 4.4e-186 654.8 418 73.9
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.7e-186 654.4 417 76.3
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.7e-185 651.7 413 75.1
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 8.3e-185 650.6 432 73.6
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 1.1e-184 650.2 418 75.4
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 1.1e-184 650.2 418 73.2
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 1.4e-184 649.8 418 74.2
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 1.4e-184 649.8 417 74.6
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 1.8e-184 649.4 418 73.0
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 2.4e-184 649.0 417 73.9
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 3.2e-184 648.7 418 74.4
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 3.2e-184 648.7 419 75.2
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.2e-183 646.7 416 74.8
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.7e-183 645.6 416 73.6
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 3.5e-183 645.2 412 74.5
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 5.9e-183 644.4 435 72.6
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 3.0e-182 642.1 417 74.1
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.0e-182 641.3 418 73.0
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 9.5e-181 637.1 416 72.6
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 1.2e-180 636.7 418 74.4
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 2.8e-180 635.6 418 72.2
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 3.6e-180 635.2 421 73.2
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 1.8e-179 632.9 405 76.3
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.2e-178 630.2 412 71.8
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 1.2e-178 630.2 414 72.5
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 1.5e-178 629.8 412 70.9
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 3.4e-178 628.6 458 68.1
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 4.4e-178 628.2 414 72.0
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 1.3e-177 626.7 420 71.4
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 2.9e-177 625.5 417 70.0
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 8.3e-177 624.0 451 67.8
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.2e-176 622.1 417 72.9
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 4.1e-176 621.7 417 69.8
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.2e-175 620.2 414 71.0
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 2.0e-175 619.4 418 72.2
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 2.7e-175 619.0 417 72.4
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 3.5e-175 618.6 417 70.3
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 2.5e-173 612.5 420 69.3
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 2.5e-173 612.5 413 70.5
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.1e-172 609.4 418 72.2
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.4e-171 606.7 418 72.0
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.8e-171 606.3 416 70.2
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 4.0e-171 605.1 358 80.2
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 3.4e-170 602.1 423 69.3
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 1.7e-169 599.7 365 77.5
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 4.9e-169 598.2 500 60.6
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 3.0e-166 589.0 359 76.9
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 3.9e-166 588.6 421 66.3
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.1e-165 587.0 417 65.7
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 3.1e-163 578.9 368 73.9
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 3.3e-157 558.9 414 63.5
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.4e-155 553.5 344 75.3
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 8.4e-153 544.3 341 74.8
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 2.4e-152 542.7 412 61.4
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 2.4e-147 526.2 415 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 2.2e-145 519.6 417 59.7
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.2e-138 497.3 435 60.2
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 4.5e-138 495.4 417 60.0
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 6.7e-134 481.5 432 53.5
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 8.4e-129 464.5 303 73.9
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.9e-128 463.4 340 66.5
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.0e-118 431.0 315 67.6
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 4.5e-114 415.6 302 69.2
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 2.6e-109 399.8 293 67.6
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 5.7e-109 398.7 222 82.0
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 9.1e-107 391.3 511 41.9
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 1.1e-101 374.4 424 46.0
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 4.4e-101 372.5 415 45.5
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.7e-100 370.5 406 46.8
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 3.6e-95 352.8 235 71.5
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 6.3e-92 342.0 245 65.3
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 6.5e-89 332.0 198 75.8
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.5e-88 330.1 198 75.3
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 4.0e-78 296.2 221 66.5
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 8.6e-73 278.5 216 67.1
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 8.3e-68 261.9 174 71.8
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 5.6e-64 249.2 258 52.3
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.8e-63 246.9 163 74.2
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 2.4e-59 233.8 179 64.8
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 6.0e-58 229.2 151 72.8
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 1.6e-55 221.1 229 51.5
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 3.6e-55 219.9 155 69.0
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.4e-51 208.0 123 77.2
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.2e-51 206.8 187 56.7
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.3e-49 200.7 335 38.5
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.8e-47 193.7 121 69.4
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.4e-45 186.8 341 37.5
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 2.9e-44 183.7 124 69.4
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 8.4e-44 182.2 124 71.0
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.4e-35 154.1 127 55.9
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 8.7e-33 145.6 102 68.6
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.6e-26 124.8 124 54.8
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 6.0e-26 122.9 66 80.3
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.8e-25 121.3 86 70.9
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 2.5e-24 117.5 71 74.6
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 2.2e-12 77.8 64 62.5
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 6.5e-12 76.3 83 43.4
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 5.5e-11 73.2 83 42.2
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 6.0e-10 69.7 60 65.0
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 3.7e-07 60.5 44 72.7
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 1.4e-06 58.5 35 68.6
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 3.1e-06 57.4 133 27.1


User provided reference genes

Program Settings