Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.0e-78 296.6 143 100.0
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 1.5e-77 292.7 142 97.2
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 5.9e-74 280.8 160 86.9
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 2.5e-72 275.4 142 91.5
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 3.2e-72 275.0 142 92.3
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 8.2e-68 260.4 135 90.4
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 1.4e-67 259.6 143 88.8
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 1.4e-67 259.6 143 88.8
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 1.4e-67 259.6 143 88.8
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 9.1e-67 256.9 143 87.4
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 9.1e-67 256.9 143 87.4
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 3.4e-66 255.0 142 86.6
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 1.1e-64 250.0 142 84.5
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 1.4e-64 249.6 142 84.5
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 3.2e-64 248.4 142 84.5
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 3.2e-64 248.4 142 84.5
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 3.2e-64 248.4 142 84.5
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 4.4e-61 238.0 129 86.8
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 7.4e-61 237.3 142 80.3
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.3e-60 236.5 141 77.3
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 8.2e-60 233.8 139 77.0
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 7.7e-58 227.3 142 72.5
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 2.9e-57 225.3 147 70.7
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 8.5e-57 223.8 140 73.6
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 1.1e-56 223.4 139 73.4
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 3.2e-56 221.9 136 72.8
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 7.2e-56 220.7 145 71.0
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 1.2e-55 219.9 139 71.9
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.6e-55 219.5 136 71.3
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 2.7e-55 218.8 146 71.9
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 2.7e-55 218.8 139 71.2
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 2.7e-55 218.8 136 72.8
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 4.7e-55 218.0 138 71.0
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 1.8e-54 216.1 145 69.0
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 2.3e-54 215.7 142 70.4
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 2.3e-54 215.7 139 67.6
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 3.0e-54 215.3 140 68.6
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 3.0e-54 215.3 138 70.3
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 4.0e-54 214.9 136 73.5
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 6.7e-54 214.2 130 72.3
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 8.8e-54 213.8 137 71.5
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.2e-53 213.4 137 72.3
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 1.5e-53 213.0 140 70.7
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.5e-53 213.0 137 70.8
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.0e-53 212.6 138 70.3
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.0e-53 212.6 137 72.3
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 2.0e-53 212.6 137 70.8
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 3.3e-53 211.8 144 68.8
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 4.4e-53 211.5 139 68.3
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 4.4e-53 211.5 139 69.1
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 5.7e-53 211.1 141 66.7
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 7.5e-53 210.7 130 70.8
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 9.7e-53 210.3 141 69.5
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 9.7e-53 210.3 137 70.8
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 9.7e-53 210.3 137 70.8
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 1.3e-52 209.9 139 67.6
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.3e-52 209.9 137 70.1
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.2e-52 209.1 138 69.6
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 2.2e-52 209.1 137 70.1
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 6.3e-52 207.6 138 68.1
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 6.3e-52 207.6 151 63.6
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 8.2e-52 207.2 136 66.9
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 1.1e-51 206.8 129 71.3
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 1.4e-51 206.5 142 65.5
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 1.8e-51 206.1 139 67.6
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 1.8e-51 206.1 139 66.9
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 2.4e-51 205.7 131 70.2
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 2.4e-51 205.7 139 68.3
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 3.1e-51 205.3 139 66.9
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 3.1e-51 205.3 130 69.2
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 5.3e-51 204.5 139 66.9
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 7.0e-51 204.1 137 67.2
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 2.7e-50 202.2 139 67.6
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 3.5e-50 201.8 139 66.9
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 3.5e-50 201.8 137 66.4
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 3.5e-50 201.8 137 66.4
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.7e-49 199.5 137 65.7
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 1.7e-49 199.5 128 71.1
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 2.2e-49 199.1 131 68.7
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.2e-49 199.1 139 65.5
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.9e-49 198.7 130 68.5
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 3.8e-49 198.4 130 70.0
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 5.0e-49 198.0 129 68.2
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 6.5e-49 197.6 132 66.7
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 6.5e-49 197.6 129 68.2
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.9e-48 196.1 129 67.4
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 9.4e-48 193.7 139 65.5
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.2e-47 193.4 132 65.9
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 1.2e-47 193.4 138 66.7
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 1.6e-47 193.0 213 50.2
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 3.6e-47 191.8 142 62.0
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 4.7e-47 191.4 131 65.6
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 1.0e-46 190.3 139 64.0
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.0e-46 190.3 139 65.5
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 5.2e-46 188.0 122 70.5
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 8.8e-46 187.2 139 64.7
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 1.2e-45 186.8 139 59.0
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 3.4e-45 185.3 136 62.5
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 3.4e-45 185.3 136 62.5
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 3.4e-45 185.3 122 68.9
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 3.4e-45 185.3 139 63.3
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 3.4e-45 185.3 135 65.2
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 1.7e-44 183.0 129 60.5
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.7e-44 183.0 135 61.5
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.1e-43 180.3 121 66.9
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 5.9e-42 174.5 131 64.1
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 1.0e-41 173.7 139 57.6
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 3.8e-41 171.8 140 52.9
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 6.5e-41 171.0 136 55.9
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.5e-40 169.9 140 52.9
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 9.5e-40 167.2 112 67.0
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 2.3e-38 162.5 131 56.5
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.5e-37 159.8 140 50.0
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 2.0e-37 159.5 210 41.9
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 1.4e-35 153.3 130 58.5
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 1.8e-30 136.3 81 77.8
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 9.8e-29 130.6 85 71.8
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 9.8e-29 130.6 81 72.8
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 3.7e-28 128.6 82 69.5
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 8.3e-28 127.5 133 44.4
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 1.1e-27 127.1 134 46.3
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.4e-27 126.7 83 71.1
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 1.4e-27 126.7 133 46.6
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 3.2e-27 125.6 133 42.9
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 6.0e-26 121.3 127 44.9
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 1.0e-25 120.6 85 70.6
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 2.3e-25 119.4 120 46.7
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 2.5e-24 115.9 120 45.8
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 2.5e-24 115.9 91 60.4
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 3.3e-24 115.5 120 45.8
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 3.3e-24 115.5 136 43.4
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 5.6e-24 114.8 136 39.7
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.6e-23 113.2 133 43.6
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 1.1e-22 110.5 145 38.6
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 4.4e-21 105.1 95 49.5
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 5.8e-21 104.8 161 36.6
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 9.8e-21 104.0 95 50.5
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 3.2e-19 99.0 131 35.9
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 1.2e-18 97.1 131 35.9
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 1.2e-15 87.0 118 38.1
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 5.2e-14 81.6 56 66.1
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 5.4e-11 71.6 61 54.1
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.5e-08 62.8 53 50.9
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.5e-08 62.8 53 50.9
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 4.0e-06 55.5 40 62.5


User provided reference genes

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