Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 0.0e+00 1297.7 633 100.0
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 0.0e+00 1241.1 636 94.8
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 0.0e+00 1141.3 630 89.2
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 0.0e+00 1139.4 635 88.0
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 0.0e+00 1130.9 637 87.6
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 0.0e+00 1124.8 640 86.9
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 0.0e+00 1109.7 636 86.3
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 0.0e+00 1109.0 636 86.0
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 0.0e+00 1075.8 639 83.4
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 7.8e-288 993.4 648 76.2
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 6.9e-260 900.6 636 70.3
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 3.2e-257 891.7 643 70.3
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 3.2e-257 891.7 650 69.2
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 3.6e-256 888.3 633 70.3
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.0e-255 886.7 637 69.2
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 1.4e-255 886.3 627 70.0
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 1.8e-255 885.9 636 69.3
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 1.8e-255 885.9 640 69.5
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 1.8e-255 885.9 637 69.5
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 6.7e-255 884.0 645 69.5
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 1.1e-254 883.2 638 68.8
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 1.7e-253 879.4 638 69.0
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 4.8e-253 877.9 637 68.6
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 1.2e-251 873.2 630 69.8
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 2.0e-251 872.5 650 68.5
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 2.9e-250 868.6 637 68.1
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.9e-250 868.6 663 66.7
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 3.8e-250 868.2 636 68.7
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 5.0e-250 867.8 674 65.6
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 3.2e-249 865.1 642 68.1
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 1.8e-247 859.4 639 67.0
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 1.8e-247 859.4 636 68.2
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 8.8e-247 857.1 656 66.5
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 8.8e-247 857.1 637 65.9
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.1e-246 856.7 656 66.5
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 2.2e-245 852.4 640 67.7
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 1.3e-242 843.2 642 66.2
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 2.2e-242 842.4 634 67.8
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 1.5e-241 839.7 645 66.5
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 1.5e-241 839.7 634 67.4
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 1.9e-241 839.3 598 69.9
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 2.5e-241 839.0 645 65.3
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 1.2e-240 836.6 643 64.9
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 1.6e-240 836.3 636 66.2
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 2.0e-238 829.3 629 65.5
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 1.7e-237 826.2 635 65.4
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 3.7e-237 825.1 627 65.2
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 3.1e-236 822.0 642 65.0
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 1.6e-235 819.7 670 63.1
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 2.0e-235 819.3 635 65.7
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 1.0e-234 817.0 641 64.3
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 1.0e-234 817.0 627 65.1
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 1.7e-234 816.2 645 63.7
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 5.0e-234 814.7 633 64.8
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 1.9e-233 812.8 662 63.6
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 4.2e-233 811.6 638 64.3
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 1.2e-232 810.1 637 64.1
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 3.6e-232 808.5 635 66.1
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 2.3e-231 805.8 649 63.6
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 3.0e-231 805.4 627 64.4
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 1.2e-230 803.5 628 64.3
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 2.6e-230 802.4 633 65.1
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 1.7e-229 799.7 636 64.0
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 2.2e-229 799.3 642 62.8
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 3.7e-229 798.5 642 62.9
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 8.3e-229 797.3 634 62.0
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 1.4e-228 796.6 650 61.7
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 1.8e-228 796.2 636 63.7
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 2.7e-227 792.3 638 63.3
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 3.5e-227 792.0 635 62.4
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 4.5e-227 791.6 638 62.9
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 7.7e-227 790.8 590 67.1
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 1.3e-226 790.0 638 61.6
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 5.0e-226 788.1 656 61.1
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 6.5e-226 787.7 641 62.9
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 1.9e-225 786.2 642 62.6
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 2.5e-225 785.8 674 61.3
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 4.2e-225 785.0 635 62.2
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 2.3e-223 779.2 660 60.9
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 8.8e-223 777.3 631 63.7
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 3.7e-221 771.9 649 61.2
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 3.7e-221 771.9 649 61.2
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 1.3e-218 763.5 645 61.4
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 1.7e-218 763.1 629 60.6
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 8.3e-213 744.2 438 84.0
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 1.3e-205 720.3 636 59.3
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 7.0e-204 714.5 634 58.4
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 3.5e-195 685.6 461 72.5
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 1.0e-194 684.1 594 58.2
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 8.4e-189 664.5 536 62.9
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 1.1e-188 664.1 497 66.8
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 2.4e-188 662.9 615 55.3
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 7.1e-188 661.4 613 55.6
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 4.2e-180 635.6 635 53.9
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 1.3e-168 597.4 593 54.1
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 1.0e-154 551.2 505 57.6
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 4.3e-153 545.8 361 72.9
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 2.9e-141 506.5 328 75.0
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 2.6e-134 483.4 337 70.0
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 2.0e-129 467.2 461 53.1
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 4.0e-106 389.8 419 51.8
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 1.8e-74 284.6 267 54.7
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 3.4e-73 280.4 185 74.6
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 3.4e-65 253.8 176 65.3
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 1.6e-62 245.0 204 62.3
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 5.3e-50 203.4 146 68.5
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 7.6e-49 199.5 126 76.2
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 1.1e-47 195.7 190 51.6
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 7.9e-46 189.5 170 61.8
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 6.9e-42 176.4 128 68.0
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 5.7e-36 156.8 173 50.3
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 3.2e-31 141.0 73 86.3
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 8.2e-27 126.3 114 57.0
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 2.1e-22 111.7 103 56.3
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 6.1e-22 110.2 64 76.6
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 6.9e-18 96.7 81 55.6


User provided reference genes

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