Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 4.7e-102 374.8 225 100.0
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 2.3e-85 319.3 227 79.3
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 3.6e-62 242.3 255 58.0
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 3.4e-60 235.7 237 67.5
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 2.7e-57 226.1 245 58.8
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 5.5e-50 201.8 224 55.4
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 1.2e-49 200.7 226 55.3
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 1.2e-49 200.7 226 55.3
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 1.1e-39 167.5 183 53.0
CARHR000590 Cardamine hirsuta HOM05D005367 ORTHO05D006328 2.2e-30 136.7 145 58.6
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 5.0e-27 125.6 200 41.5
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 2.7e-25 119.8 114 60.5
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 8.8e-24 114.8 180 40.0
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 3.3e-23 112.8 174 39.1
CARHR000610 Cardamine hirsuta HOM05D005367 ORTHO05D006328 1.3e-22 110.9 103 64.1
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 2.2e-22 110.2 208 40.4
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 3.7e-22 109.4 152 42.1
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 6.3e-22 108.6 181 40.3
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 1.1e-21 107.8 168 37.5
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 1.1e-21 107.8 174 38.5
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 1.8e-21 107.1 162 42.6
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 2.4e-21 106.7 169 41.4
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 3.1e-21 106.3 164 40.2
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 3.1e-21 106.3 166 41.0
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 4.1e-21 105.9 218 38.5
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 4.1e-21 105.9 149 40.3
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 5.3e-21 105.5 173 42.8
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 5.3e-21 105.5 208 37.5
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 1.2e-20 104.4 214 37.9
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.2e-20 104.4 208 37.5
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.2e-20 104.4 174 40.2
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 3.4e-20 102.8 147 42.2
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 4.5e-20 102.4 205 36.1
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 4.5e-20 102.4 191 37.7
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 5.9e-20 102.1 175 38.9
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 7.7e-20 101.7 181 40.3
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 1.0e-19 101.3 186 34.9
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 1.3e-19 100.9 174 40.2
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.7e-19 100.5 162 38.9
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.7e-19 100.5 176 40.9
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 2.2e-19 100.1 156 42.3
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 2.9e-19 99.8 162 42.0
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 5.0e-19 99.0 186 38.2
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 5.0e-19 99.0 186 42.5
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.5e-19 98.6 176 40.3
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 8.5e-19 98.2 192 35.9
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 1.1e-18 97.8 216 35.2
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.1e-18 97.8 162 41.4
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 1.1e-18 97.8 182 37.4
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.1e-18 97.8 163 41.7
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 1.4e-18 97.4 154 39.0
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-18 97.1 176 40.3
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.9e-18 97.1 159 37.7
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 1.9e-18 97.1 174 37.9
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 1.9e-18 97.1 192 35.9
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 2.5e-18 96.7 76 69.7
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 2.5e-18 96.7 152 40.1
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 2.5e-18 96.7 162 35.8
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 4.2e-18 95.9 183 36.6
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 4.2e-18 95.9 165 37.0
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 5.5e-18 95.5 198 34.8
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 5.5e-18 95.5 177 37.3
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 7.2e-18 95.1 168 39.3
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 7.2e-18 95.1 173 38.7
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 7.2e-18 95.1 163 36.8
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 1.2e-17 94.4 174 38.5
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.2e-17 94.4 157 37.6
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.6e-17 94.0 163 38.7
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 1.6e-17 94.0 192 34.9
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 2.1e-17 93.6 159 39.6
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 2.1e-17 93.6 170 37.6
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 2.1e-17 93.6 174 37.9
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 2.1e-17 93.6 169 39.1
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 2.1e-17 93.6 158 38.6
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 2.7e-17 93.2 159 39.6
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 2.7e-17 93.2 152 40.1
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 3.6e-17 92.8 175 35.4
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 3.6e-17 92.8 179 36.9
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 4.7e-17 92.4 175 39.4
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 4.7e-17 92.4 177 36.7
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 6.1e-17 92.0 155 38.7
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 7.9e-17 91.7 146 39.7
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 1.0e-16 91.3 178 35.4
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 1.0e-16 91.3 151 39.1
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 1.0e-16 91.3 187 34.2
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 1.8e-16 90.5 156 37.8
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 2.3e-16 90.1 187 34.8
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 6.7e-16 88.6 152 36.8
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 6.7e-16 88.6 157 36.9
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 8.8e-16 88.2 202 35.1
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 8.8e-16 88.2 174 37.9
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 1.1e-15 87.8 162 38.3
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 4.4e-15 85.9 162 37.7
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 7.4e-15 85.1 166 33.7
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 9.7e-15 84.7 194 34.0
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 1.7e-14 84.0 157 34.4
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 2.2e-14 83.6 170 35.9
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 2.2e-14 83.6 155 40.0
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 2.2e-14 83.6 204 32.8
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 3.7e-14 82.8 163 36.2
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 4.8e-14 82.4 173 34.7
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 1.1e-13 81.3 174 33.3
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.4e-13 80.9 191 36.1
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 1.4e-13 80.9 193 34.2
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 1.8e-13 80.5 151 38.4
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 4.1e-13 79.3 194 32.0
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 7.0e-13 78.6 160 36.2
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 9.1e-13 78.2 197 31.5
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 1.6e-12 77.4 158 34.8
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 1.6e-12 77.4 155 34.2
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.0e-11 74.7 178 33.1
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.0e-11 72.4 112 42.9
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 5.0e-11 72.4 186 31.7
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 6.5e-11 72.0 155 34.8
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.5e-10 70.1 95 44.2
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.5e-10 70.1 95 44.2
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.2e-10 69.7 193 31.6
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 4.2e-10 69.3 202 29.7
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.5e-10 68.9 202 30.7
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 3.6e-09 66.2 141 36.2
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.6e-09 66.2 112 41.1
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.8e-08 63.9 196 31.1
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.8e-08 63.9 196 31.1
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 5.2e-08 62.4 158 33.5
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.3e-06 57.8 197 31.5
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 6.3e-06 55.5 210 30.0
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 8.2e-06 55.1 136 30.9


User provided reference genes

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