Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL9U11970 Arabidopsis lyrata HOM05D000963 ORTHO05D004715 5.4e-74 280.8 132 100.0
C09p40280 Brassica napus HOM05D000963 ORTHO05D004715 5.4e-74 280.8 132 100.0
BolSC44t60816H Brassica oleracea HOM05D000963 ORTHO05D004715 5.4e-74 280.8 132 100.0
BolSC44t60829H Brassica oleracea HOM05D000963 ORTHO05D004715 5.4e-74 280.8 132 100.0
BolSC49t61135H Brassica oleracea HOM05D000963 ORTHO05D004715 5.4e-74 280.8 132 100.0
BraSC103t45422Z Brassica rapa HOM05D000963 ORTHO05D004715 5.4e-74 280.8 132 100.0
BraSC103t45433Z Brassica rapa HOM05D000963 ORTHO05D004715 5.4e-74 280.8 132 100.0
BraSC25t45904Z Brassica rapa HOM05D000963 ORTHO05D004715 5.4e-74 280.8 132 100.0
BraSC25t45917Z Brassica rapa HOM05D000963 ORTHO05D004715 5.4e-74 280.8 132 100.0
BraSC138t45541Z Brassica rapa HOM05D000963 ORTHO05D004715 2.7e-73 278.5 131 99.2
BolSC29t60541H Brassica oleracea HOM05D000963 ORTHO05D004715 6.0e-73 277.3 132 98.5
BolSC37t60787H Brassica oleracea HOM05D000963 ORTHO05D004715 1.3e-72 276.2 133 99.2
BolC9t56918H Brassica oleracea HOM05D000963 ORTHO05D004715 2.3e-72 275.4 132 98.5
BolSC45t60916H Brassica oleracea HOM05D000963 ORTHO05D004715 3.9e-72 274.6 128 100.0
Migut.D01391 Erythranthe guttata HOM05D000963 ORTHO05D004715 1.5e-71 272.7 132 97.0
Sed0014585 Sechium edule HOM05D000963 ORTHO05D004715 1.5e-71 272.7 132 97.7
Atru.chr1.3576 Acer truncatum HOM05D000963 ORTHO05D004715 4.3e-71 271.2 132 97.0
QL10p017079 Quercus lobata HOM05D000963 ORTHO05D004715 4.3e-71 271.2 131 96.9
QL93p0141_0026 Quercus lobata HOM05D000963 ORTHO05D004715 4.3e-71 271.2 131 96.9
COL.COLO4_02154 Corchorus olitorius HOM05D000963 ORTHO05D004715 5.6e-71 270.8 132 97.0
BraSC59t46533Z Brassica rapa HOM05D000963 ORTHO05D004715 7.3e-71 270.4 132 96.2
Gohir.1Z049781 Gossypium hirsutum HOM05D000963 ORTHO05D004715 9.6e-71 270.0 132 97.0
Lsat_1_v5_gn_1_88180 Lactuca sativa HOM05D000963 ORTHO05D004715 9.6e-71 270.0 132 97.0
Lsat_1_v5_gn_2_97121 Lactuca sativa HOM05D000963 ORTHO05D004715 9.6e-71 270.0 132 97.0
Lsat_1_v5_gn_9_121741 Lactuca sativa HOM05D000963 ORTHO05D004715 9.6e-71 270.0 132 97.0
Sopen06g015060 Solanum pennellii HOM05D000963 ORTHO05D004715 1.2e-70 269.6 133 97.0
PGSC0003DMG400034831 Solanum tuberosum HOM05D000963 ORTHO05D004715 1.2e-70 269.6 133 97.0
Gohir.A02G134101 Gossypium hirsutum HOM05D000963 ORTHO05D004715 4.7e-70 267.7 128 97.7
Lsat_1_v5_gn_8_139840 Lactuca sativa HOM05D000963 ORTHO05D004715 4.7e-70 267.7 132 96.2
QL93p0141_0000 Quercus lobata HOM05D000963 ORTHO05D004715 8.1e-70 266.9 131 95.4
CAN.G929.1 Capsicum annuum HOM05D000963 ORTHO05D004715 1.5e-68 262.7 133 94.7
CAN.G1298.20 Capsicum annuum HOM05D000963 ORTHO05D004715 4.4e-68 261.2 133 94.0
Lsat_1_v5_gn_2_50801 Lactuca sativa HOM05D000963 ORTHO05D004715 8.4e-67 256.9 131 93.1
Lsat_1_v5_gn_5_181901 Lactuca sativa HOM05D000963 ORTHO05D004715 8.4e-67 256.9 129 93.8
Lsat_1_v5_gn_5_4701 Lactuca sativa HOM05D000963 ORTHO05D004715 8.4e-67 256.9 129 93.8
Sed0012027 Sechium edule HOM05D000963 ORTHO05D004715 2.4e-66 255.4 131 93.9
Gohir.D03G074976 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.2e-65 253.1 123 94.3
BraSC143t45652Z Brassica rapa HOM05D000963 ORTHO05D004715 8.7e-64 246.9 133 90.2
HPP92_028430 Vanilla planifolia HOM05D000963 ORTHO05D004715 2.5e-63 245.4 132 88.6
FvH4_c3g00050 Fragaria vesca HOM05D000963 ORTHO05D004715 3.3e-63 245.0 123 94.3
Sed0006422 Sechium edule HOM05D000963 ORTHO05D004715 9.6e-63 243.4 126 92.1
CAN.G965.10 Capsicum annuum HOM05D000963 ORTHO05D004715 3.6e-62 241.5 133 89.5
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 4.0e-61 238.0 118 95.8
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 4.0e-61 238.0 118 95.8
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 9.0e-61 236.9 130 83.8
C09p39330 Brassica napus HOM05D000963 ORTHO05D004715 1.2e-60 236.5 132 87.9
Gorai.012G060700 Gossypium raimondii HOM05D000963 ORTHO05D004715 3.4e-60 235.0 118 93.2
Nitab4.5_0008665g0030 Nicotiana tabacum HOM05D000963 ORTHO05D004715 3.8e-59 231.5 123 90.2
Gohir.D01G169154 Gossypium hirsutum HOM05D000963 ORTHO05D004715 4.2e-58 228.0 115 94.8
Medtr5g080940 Medicago truncatula HOM05D000963 ORTHO05D004715 7.1e-58 227.3 127 85.8
Potri.011G074033 Populus trichocarpa HOM05D000963 ORTHO05D004715 1.1e-55 219.9 106 96.2
Gohir.A07G151200 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.5e-55 218.8 106 96.2
Aqoxy38s008 Aquilegia oxysepala HOM05D000963 ORTHO05D004715 9.6e-55 216.9 106 95.3
Gohir.A04G057626 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.1e-54 215.7 106 93.4
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 2.8e-54 215.3 110 92.7
CAN.G67.2 Capsicum annuum HOM05D000963 ORTHO05D004715 3.7e-54 214.9 145 77.2
Gohir.D04G096676 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.8e-53 212.6 106 92.5
BraSC59t46506Z Brassica rapa HOM05D000963 ORTHO05D004715 2.4e-53 212.2 102 99.0
Gohir.A01G139826 Gossypium hirsutum HOM05D000963 ORTHO05D004715 4.0e-53 211.5 132 80.3
Gohir.D04G054150 Gossypium hirsutum HOM05D000963 ORTHO05D004715 6.9e-53 210.7 106 93.4
Sabra11G0069300 Salix brachista HOM05D000963 ORTHO05D004715 9.0e-53 210.3 110 90.9
FAN13G1706 Fragaria x ananassa HOM05D000963 ORTHO05D004715 1.2e-52 209.9 109 91.7
Gohir.A05G286366 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.3e-51 206.5 101 96.0
SalBow1G2814 Salvia bowleyana HOM05D000963 ORTHO05D004715 1.3e-51 206.5 108 91.7
SalBow1G5969 Salvia bowleyana HOM05D000963 ORTHO05D004715 1.3e-51 206.5 108 91.7
Sed0011513 Sechium edule HOM05D000963 ORTHO05D004715 2.9e-51 205.3 126 81.7
Oeu050315.1 Olea europaea HOM05D000963 ORTHO05D004715 7.9e-49 197.2 97 96.9
Oeu012821.1 Olea europaea HOM05D000963 ORTHO05D004715 1.0e-48 196.8 132 76.5
arahy.Tifrunner.gnm1.ann1.D5AR02 Arachis hypogaea HOM05D000963 ORTHO05D004715 6.7e-48 194.1 118 82.2
BraSC58t46456Z Brassica rapa HOM05D000963 ORTHO05D004715 1.5e-47 193.0 88 100.0
Sc01g0005720 Simmondsia chinensis HOM05D000963 ORTHO05D004715 1.5e-47 193.0 106 86.8
HPP92_028419 Vanilla planifolia HOM05D000963 ORTHO05D004715 2.1e-46 189.1 99 88.9
HPP92_028432 Vanilla planifolia HOM05D000963 ORTHO05D004715 2.1e-46 189.1 99 88.9
DCAR_014935 Daucus carota HOM05D000963 ORTHO05D004715 1.8e-45 186.0 90 95.6
HPP92_028383 Vanilla planifolia HOM05D000963 ORTHO05D004715 2.4e-45 185.7 99 87.9
HPP92_028406 Vanilla planifolia HOM05D000963 ORTHO05D004715 2.4e-45 185.7 99 87.9
HPP92_028415 Vanilla planifolia HOM05D000963 ORTHO05D004715 2.4e-45 185.7 99 87.9
Gohir.D11G164850 Gossypium hirsutum HOM05D000963 ORTHO05D004715 5.8e-44 181.0 90 96.7
CSS0016818 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D004715 1.3e-43 179.9 132 70.5
arahy.Tifrunner.gnm1.ann1.0S9V2W Arachis hypogaea HOM05D000963 ORTHO05D004715 1.7e-43 179.5 90 93.3
arahy.Tifrunner.gnm1.ann1.56M0GV Arachis hypogaea HOM05D000963 ORTHO05D004715 1.7e-43 179.5 90 93.3
arahy.Tifrunner.gnm1.ann1.E29LBX Arachis hypogaea HOM05D000963 ORTHO05D004715 1.7e-43 179.5 90 93.3
arahy.Tifrunner.gnm1.ann1.NRNC1F Arachis hypogaea HOM05D000963 ORTHO05D004715 1.7e-43 179.5 90 93.3
arahy.Tifrunner.gnm1.ann1.PH4GL6 Arachis hypogaea HOM05D000963 ORTHO05D004715 1.7e-43 179.5 90 93.3
arahy.Tifrunner.gnm1.ann1.RS9AFF Arachis hypogaea HOM05D000963 ORTHO05D004715 1.7e-43 179.5 90 93.3
arahy.Tifrunner.gnm1.ann1.TDDH8C Arachis hypogaea HOM05D000963 ORTHO05D004715 1.7e-43 179.5 90 93.3
arahy.Tifrunner.gnm1.ann1.UGP0DD Arachis hypogaea HOM05D000963 ORTHO05D004715 1.7e-43 179.5 90 93.3
arahy.Tifrunner.gnm1.ann1.WD30LQ Arachis hypogaea HOM05D000963 ORTHO05D004715 1.7e-43 179.5 90 93.3
arahy.Tifrunner.gnm1.ann1.ZA1EMG Arachis hypogaea HOM05D000963 ORTHO05D004715 1.7e-43 179.5 90 93.3
arahy.Tifrunner.gnm1.ann1.54C0KZ Arachis hypogaea HOM05D000963 ORTHO05D004715 4.9e-43 177.9 90 92.2
arahy.Tifrunner.gnm1.ann1.WSE485 Arachis hypogaea HOM05D000963 ORTHO05D004715 8.4e-43 177.2 90 92.2
Oeu015131.2 Olea europaea HOM05D000963 ORTHO05D004715 6.0e-41 171.0 95 83.2
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 3.0e-40 168.7 80 96.2
Nitab4.5_0012234g0080 Nicotiana tabacum HOM05D000963 ORTHO05D004715 3.0e-40 168.7 107 80.4
Lsat_1_v5_gn_2_90421 Lactuca sativa HOM05D000963 ORTHO05D004715 6.7e-40 167.5 92 90.2
Lsat_1_v5_gn_1_109481 Lactuca sativa HOM05D000963 ORTHO05D004715 1.6e-38 162.9 89 83.1
Actinidia23508 Actinidia chinensis HOM05D000963 ORTHO05D004715 2.2e-38 162.5 87 86.2
arahy.Tifrunner.gnm1.ann1.0QCF99 Arachis hypogaea HOM05D000963 ORTHO05D004715 2.2e-38 162.5 81 92.6
arahy.Tifrunner.gnm1.ann1.6K111H Arachis hypogaea HOM05D000963 ORTHO05D004715 2.2e-38 162.5 81 92.6
arahy.Tifrunner.gnm1.ann1.B9EW81 Arachis hypogaea HOM05D000963 ORTHO05D004715 2.2e-38 162.5 81 92.6
arahy.Tifrunner.gnm1.ann1.NMB5YK Arachis hypogaea HOM05D000963 ORTHO05D004715 2.2e-38 162.5 81 92.6
arahy.Tifrunner.gnm1.ann1.QIDR5S Arachis hypogaea HOM05D000963 ORTHO05D004715 2.2e-38 162.5 81 92.6
CsaV3_2G008200 Cucumis sativus L. HOM05D000963 ORTHO05D004715 1.1e-37 160.2 77 93.5
Gohir.A01G119775 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.5e-36 156.4 80 93.8
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 7.6e-36 154.1 80 88.8
Gohir.D01G023469 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.0e-35 153.7 76 93.4
Gorai.002G027900 Gossypium raimondii HOM05D000963 ORTHO05D004715 1.3e-35 153.3 76 92.1
Nitab4.5_0004137g0020 Nicotiana tabacum HOM05D000963 ORTHO05D004715 1.1e-34 150.2 92 85.9
Dinv05169 Davidia involucrata HOM05D000963 ORTHO05D004715 1.4e-34 149.8 80 87.5
SabraPtG0005400 Salix brachista HOM05D000963 ORTHO05D004715 4.2e-34 148.3 84 86.9
arahy.Tifrunner.gnm1.ann1.LM30Y3 Arachis hypogaea HOM05D000963 ORTHO05D004715 7.2e-34 147.5 81 84.0
unitig_91.g26522 Utricularia gibba HOM05D000963 ORTHO05D004715 1.3e-32 143.3 67 95.5
unitig_91.g26525 Utricularia gibba HOM05D000963 ORTHO05D004715 1.3e-32 143.3 67 95.5
FAN18G1953 Fragaria x ananassa HOM05D000315 ORTHO05D004100 2.3e-32 142.5 89 77.5
Gohir.A04G039030 Gossypium hirsutum HOM05D000963 ORTHO05D004715 5.1e-32 141.4 71 91.5
Glyma.06G274000 Glycine max HOM05D000963 ORTHO05D004715 6.7e-32 141.0 125 63.2
Phvul.003G259600 Phaseolus vulgaris HOM05D000963 ORTHO05D004715 1.1e-31 140.2 88 77.3
BolSC46t60965H Brassica oleracea HOM05D000963 ORTHO05D004715 2.5e-31 139.0 66 100.0
COL.COLO4_03191 Corchorus olitorius HOM05D000963 ORTHO05D004715 4.3e-31 138.3 96 75.0
BolSC29t60514H Brassica oleracea HOM05D000963 ORTHO05D004715 9.7e-31 137.1 66 98.5
BraSC59t46544Z Brassica rapa HOM05D000963 ORTHO05D004715 9.7e-31 137.1 68 95.6
Potri.002G263451 Populus trichocarpa HOM05D000963 ORTHO05D004715 9.7e-31 137.1 80 83.8
Nitab4.5_0007400g0120 Nicotiana tabacum HOM05D000963 ORTHO05D004715 1.3e-30 136.7 93 77.4
BolSC29t60553H Brassica oleracea HOM05D000963 ORTHO05D004715 3.7e-30 135.2 64 100.0
Cpa.g.sc302.1 Carica papaya HOM05D000963 ORTHO05D004715 6.3e-30 134.4 67 97.0
BolC2t10589H Brassica oleracea HOM05D000963 ORTHO05D004715 3.1e-29 132.1 66 95.5
Mapoly0147s0015 Marchantia polymorpha HOM05D000963 ORTHO05D004715 4.1e-29 131.7 122 59.0
BolSC35t60711H Brassica oleracea HOM05D000963 ORTHO05D004715 1.5e-28 129.8 73 86.3
BolSC49t61150H Brassica oleracea HOM05D000963 ORTHO05D004715 2.6e-28 129.0 66 93.9
BolSC45t60901H Brassica oleracea HOM05D000963 ORTHO05D004715 5.9e-28 127.9 73 84.9
Manes.18G094701 Manihot esculenta HOM05D000963 ORTHO05D004715 5.9e-28 127.9 73 84.9
Rhsim12G0135200 Rhododendron simsii HOM05D000963 ORTHO05D004715 1.0e-27 127.1 57 98.2
BcaNung01516 Brassica carinata HOM05D000963 ORTHO05D004715 1.4e-26 123.2 119 56.3
BolC2t10606H Brassica oleracea HOM05D000963 ORTHO05D004715 1.4e-26 123.2 74 83.8
VMungo0331G0858 Vigna mungo HOM05D000963 ORTHO05D004715 6.7e-24 114.4 69 76.8
Sabra08G0089800 Salix brachista HOM05D000963 ORTHO05D004715 2.6e-23 112.5 92 64.1
FvH4_7g01961 Fragaria vesca HOM05D000963 ORTHO05D004715 9.7e-23 110.5 123 52.0
EL10Ac7g17374 Beta vulgaris HOM05D000963 ORTHO05D004715 6.3e-22 107.8 62 85.5
Psat3g162200 Pisum sativum HOM05D000963 ORTHO05D004715 3.1e-21 105.5 49 93.9
Sc25g0002020 Simmondsia chinensis HOM05D000963 ORTHO05D004715 2.0e-20 102.8 45 97.8
EL10Ac7g17381 Beta vulgaris HOM05D000963 ORTHO05D004715 3.4e-20 102.1 62 80.6
Gohir.A01G139250 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.3e-19 100.1 46 97.8
Hma1.2p1_0051F.1_g029250 Hydrangea macrophylla HOM05D000963 ORTHO05D004715 1.3e-19 100.1 43 97.7
BolSC43t60811H Brassica oleracea HOM05D000963 ORTHO05D004715 6.5e-19 97.8 46 100.0
TPR.G27622 Trifolium pratense HOM05D000963 ORTHO05D004715 1.9e-18 96.3 46 91.3
DCAR_017253 Daucus carota HOM05D000963 ORTHO05D004715 3.2e-18 95.5 58 81.0
Oeu054713.1 Olea europaea HOM05D000963 ORTHO05D004715 3.2e-18 95.5 48 95.8
BraSC179t45779Z Brassica rapa HOM05D000963 ORTHO05D004715 1.6e-17 93.2 44 100.0
FAN01G1433 Fragaria x ananassa HOM05D000963 ORTHO05D004715 2.1e-17 92.8 53 86.8
Medtr1g105230 Medicago truncatula HOM05D000963 ORTHO05D004715 2.7e-17 92.4 42 95.2
Oeu033793.1 Olea europaea HOM05D001982 ORTHO05D003938 1.8e-16 89.7 54 81.5
FAN06G2610 Fragaria x ananassa HOM05D000963 ORTHO05D004715 2.0e-15 86.3 62 67.7
Psat5g119040 Pisum sativum HOM05D000963 ORTHO05D004715 2.6e-15 85.9 84 58.3
Lj4g0000207 Lotus japonicus HOM05D000963 ORTHO05D004715 3.3e-15 85.5 41 97.6
CAN.G1594.2 Capsicum annuum HOM05D016096 ORTHO05D016167 5.7e-15 84.7 42 92.9
arahy.Tifrunner.gnm1.ann1.HN8ZWX Arachis hypogaea HOM05D000963 ORTHO05D004715 4.8e-14 81.6 41 92.7
Thecc.09G087300 Theobroma cacao HOM05D000963 ORTHO05D004715 6.3e-14 81.3 43 93.0
Gorai.002G200300 Gossypium raimondii HOM05D000963 ORTHO05D004715 5.9e-12 74.7 35 91.4
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 1.1e-10 70.5 40 82.5
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 1.1e-10 70.5 40 82.5
Sc21g0003630 Simmondsia chinensis HOM05D000556 ORTHO05D000404 4.0e-08 62.0 46 69.6
Migut.N00577 Erythranthe guttata HOM05D000963 ORTHO05D004715 6.7e-08 61.2 51 70.6
arahy.Tifrunner.gnm1.ann1.QZA5BL Arachis hypogaea HOM05D000963 ORTHO05D004715 4.8e-06 55.1 37 67.6


User provided reference genes

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