Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G44270 Arabidopsis lyrata HOM05D002940 ORTHO05D003344 2.7e-25 117.9 58 100.0
BcaB01g05121 Brassica carinata HOM05D002940 ORTHO05D003344 1.1e-15 85.9 44 93.2
C03p07550 Brassica napus HOM05D002940 ORTHO05D003344 1.1e-15 85.9 44 93.2
AL6G25020 Arabidopsis lyrata HOM05D002940 ORTHO05D003344 1.9e-15 85.1 44 90.9
AT5G14320 Arabidopsis thaliana HOM05D002940 ORTHO05D003344 1.9e-15 85.1 44 90.9
A03p06530 Brassica napus HOM05D002940 ORTHO05D003344 2.5e-15 84.7 44 90.9
BolC3t13256H Brassica oleracea HOM05D002940 ORTHO05D003344 2.5e-15 84.7 44 90.9
BraA03t09985Z Brassica rapa HOM05D002940 ORTHO05D003344 2.5e-15 84.7 44 90.9
Carub.0006s1251 Capsella rubella HOM05D002940 ORTHO05D003344 2.5e-15 84.7 44 90.9
BraA10t44482Z Brassica rapa HOM05D002940 ORTHO05D003344 1.6e-14 82.0 44 88.6
BcaB01g06334 Brassica carinata HOM05D002940 ORTHO05D003344 2.1e-14 81.6 44 86.4
BcaB01g06381 Brassica carinata HOM05D002940 ORTHO05D003344 2.1e-14 81.6 44 86.4
A10p24190 Brassica napus HOM05D002940 ORTHO05D003344 3.6e-14 80.9 44 86.4
C09p62870 Brassica napus HOM05D002940 ORTHO05D003344 3.6e-14 80.9 44 86.4
BolC9t59124H Brassica oleracea HOM05D002940 ORTHO05D003344 3.6e-14 80.9 44 86.4
Sp6g29730 Schrenkiella parvula HOM05D002940 ORTHO05D003344 4.7e-14 80.5 44 88.6
Atru.chr13.1326 Acer truncatum HOM05D002940 ORTHO05D003344 8.9e-13 76.3 46 78.3
Atru.chr13.1370 Acer truncatum HOM05D002940 ORTHO05D003344 8.9e-13 76.3 46 78.3
BcaB08g36974 Brassica carinata HOM05D002940 ORTHO05D003344 1.2e-12 75.9 49 79.6
Thhalv10014848m.g Eutrema salsugineum HOM05D002940 ORTHO05D003344 2.0e-12 75.1 44 88.6
THA.LOC104800180 Tarenaya hassleriana HOM05D002940 ORTHO05D003344 2.0e-12 75.1 44 81.8
Glyma.04G253300 Glycine max HOM05D002940 ORTHO05D003344 4.4e-12 73.9 46 73.9
Cpa.g.sc36.3 Carica papaya HOM05D002940 ORTHO05D003344 7.5e-12 73.2 49 71.4
Aa31LG11G15110 Aethionema arabicum HOM05D002940 ORTHO05D003344 1.7e-11 72.0 44 79.5
BcaC04g19045 Brassica carinata HOM05D002940 ORTHO05D003344 1.7e-11 72.0 44 81.8
Thecc.08G117900 Theobroma cacao HOM05D002940 ORTHO05D003344 1.7e-11 72.0 46 71.7
Potri.002G088300 Populus trichocarpa HOM05D002940 ORTHO05D003344 2.2e-11 71.6 46 71.7
Sabra05G0130200 Salix brachista HOM05D002940 ORTHO05D003344 2.2e-11 71.6 46 71.7
COL.COLO4_35745 Corchorus olitorius HOM05D002940 ORTHO05D003344 2.9e-11 71.2 46 73.9
CARHR199010 Cardamine hirsuta HOM05D002940 ORTHO05D003344 6.4e-11 70.1 44 81.8
Glyma.06G109300 Glycine max HOM05D002940 ORTHO05D003344 6.4e-11 70.1 46 71.7
Gohir.A02G074600 Gossypium hirsutum HOM05D002940 ORTHO05D003344 1.4e-10 68.9 46 69.6
Gohir.D02G081600 Gossypium hirsutum HOM05D002940 ORTHO05D003344 1.4e-10 68.9 46 69.6
Gorai.005G091500 Gossypium raimondii HOM05D002940 ORTHO05D003344 1.4e-10 68.9 46 69.6
CiPaw.05G227800 Carya illinoinensis HOM05D002940 ORTHO05D003344 1.9e-10 68.6 46 67.4
THA.LOC104813646 Tarenaya hassleriana HOM05D002940 ORTHO05D003344 2.4e-10 68.2 44 79.5
TWI12G1198 Tripterygium wilfordii HOM05D002940 ORTHO05D003344 2.4e-10 68.2 49 67.3
Manes.18G073608 Manihot esculenta HOM05D002940 ORTHO05D003344 3.2e-10 67.8 46 69.6
CANSAT64G2639 Cannabis sativa HOM05D002940 ORTHO05D003344 4.1e-10 67.4 49 65.3
arahy.Tifrunner.gnm1.ann1.N3M6GA Arachis hypogaea HOM05D002940 ORTHO05D003344 7.1e-10 66.6 46 67.4
arahy.Tifrunner.gnm1.ann1.W0PKFE Arachis hypogaea HOM05D002940 ORTHO05D003344 7.1e-10 66.6 46 67.4
Potri.005G172600 Populus trichocarpa HOM05D002940 ORTHO05D003344 7.1e-10 66.6 46 67.4
ClCG03G009300 Citrullus lanatus HOM05D002940 ORTHO05D003344 9.2e-10 66.2 46 69.6
MELO3C003061.2 Cucumis melo HOM05D002940 ORTHO05D003344 9.2e-10 66.2 46 69.6
Hma1.2p1_0009F.1_g006010 Hydrangea macrophylla HOM05D002940 ORTHO05D003344 9.2e-10 66.2 44 70.5
PSO170G5539 Papaver somniferum HOM05D002940 ORTHO05D003344 9.2e-10 66.2 45 68.9
PSO528G0104 Papaver somniferum HOM05D002940 ORTHO05D003344 9.2e-10 66.2 45 68.9
CsaV3_2G026730 Cucumis sativus L. HOM05D002940 ORTHO05D003344 1.2e-09 65.9 46 67.4
CsaV3_5G023320 Cucumis sativus L. HOM05D002940 ORTHO05D003344 1.2e-09 65.9 46 67.4
Phvul.009G121100 Phaseolus vulgaris HOM05D002940 ORTHO05D003344 1.2e-09 65.9 48 68.8
Cfa015966 Carpinus fangiana HOM05D002940 ORTHO05D003344 3.5e-09 64.3 46 63.0
Haze_00516 Corylus avellana HOM05D002940 ORTHO05D003344 3.5e-09 64.3 46 63.0
Dinv27376 Davidia involucrata HOM05D002940 ORTHO05D003344 3.5e-09 64.3 46 65.2
Duzib116G0045 Durio zibethinus HOM05D002940 ORTHO05D003344 3.5e-09 64.3 46 67.4
arahy.Tifrunner.gnm1.ann1.U4K4JK Arachis hypogaea HOM05D002940 ORTHO05D003344 4.6e-09 63.9 46 65.2
Ciclev10002692m.g Citrus clementina HOM05D002940 ORTHO05D003344 4.6e-09 63.9 48 64.6
Eucgr.F03746 Eucalyptus grandis HOM05D002940 ORTHO05D003344 4.6e-09 63.9 44 63.6
arahy.Tifrunner.gnm1.ann1.97RZQE Arachis hypogaea HOM05D002940 ORTHO05D003344 6.0e-09 63.5 46 65.2
arahy.Tifrunner.gnm1.ann1.A8KD6A Arachis hypogaea HOM05D002940 ORTHO05D003344 6.0e-09 63.5 46 65.2
arahy.Tifrunner.gnm1.ann1.CSY7TV Arachis hypogaea HOM05D002940 ORTHO05D003344 6.0e-09 63.5 46 65.2
arahy.Tifrunner.gnm1.ann1.D1ZLL8 Arachis hypogaea HOM05D002940 ORTHO05D003344 6.0e-09 63.5 46 63.0
arahy.Tifrunner.gnm1.ann1.K88D63 Arachis hypogaea HOM05D002940 ORTHO05D003344 6.0e-09 63.5 46 65.2
arahy.Tifrunner.gnm1.ann1.L79Y0Q Arachis hypogaea HOM05D002940 ORTHO05D003344 6.0e-09 63.5 46 65.2
arahy.Tifrunner.gnm1.ann1.XT9L53 Arachis hypogaea HOM05D002940 ORTHO05D003344 6.0e-09 63.5 46 65.2
arahy.Tifrunner.gnm1.ann1.ZDY2DP Arachis hypogaea HOM05D002940 ORTHO05D003344 6.0e-09 63.5 46 65.2
Lj1g0023800 Lotus japonicus HOM05D002940 ORTHO05D003344 6.0e-09 63.5 45 64.4
arahy.Tifrunner.gnm1.ann1.BR1SHA Arachis hypogaea HOM05D002940 ORTHO05D003344 7.8e-09 63.2 46 65.2
A02p02420 Brassica napus HOM05D002940 ORTHO05D003344 7.8e-09 63.2 32 90.6
Lsat_1_v5_gn_1_90901 Lactuca sativa HOM05D002940 ORTHO05D003344 7.8e-09 63.2 45 64.4
Lalb_Chr08g0241661 Lupinus albus HOM05D002940 ORTHO05D003344 7.8e-09 63.2 46 63.0
MD05G1042800 Malus domestica HOM05D002940 ORTHO05D003344 7.8e-09 63.2 46 65.2
Prupe.1G504800 Prunus persica HOM05D002940 ORTHO05D003344 7.8e-09 63.2 46 63.0
PGR042G3107 Punica granatum HOM05D002940 ORTHO05D003344 7.8e-09 63.2 49 61.2
VMungo1215G1631 Vigna mungo HOM05D002940 ORTHO05D003344 7.8e-09 63.2 48 66.7
CSS0011291 Camellia sinensis var. sinensis HOM05D002940 ORTHO05D003344 1.0e-08 62.8 46 63.0
Lj7A308T12 Lonicera japonica HOM05D002940 ORTHO05D003344 1.0e-08 62.8 44 65.9
arahy.Tifrunner.gnm1.ann1.7RCK35 Arachis hypogaea HOM05D002940 ORTHO05D003344 1.3e-08 62.4 46 63.0
Ca_15219_v3 Cicer arietinum L. HOM05D002940 ORTHO05D003344 1.3e-08 62.4 50 62.0
Psat5g134240 Pisum sativum HOM05D002940 ORTHO05D003344 1.3e-08 62.4 50 60.0
arahy.Tifrunner.gnm1.ann1.3M21FH Arachis hypogaea HOM05D002940 ORTHO05D003344 1.7e-08 62.0 46 63.0
HanXRQChr01g0005481 Helianthus annuus HOM05D002940 ORTHO05D003344 1.7e-08 62.0 45 62.2
TAR628G0608 Trochodendron aralioides HOM05D002940 ORTHO05D003344 1.7e-08 62.0 46 65.2
C02p06670 Brassica napus HOM05D002940 ORTHO05D003344 2.3e-08 61.6 32 87.5
CDE03G0430 Ceratophyllum demersum HOM05D002940 ORTHO05D003344 2.3e-08 61.6 51 52.9
CDE06G2485 Ceratophyllum demersum HOM05D002940 ORTHO05D003344 2.3e-08 61.6 51 52.9
Cc00_g12510 Coffea canephora HOM05D002940 ORTHO05D003344 2.3e-08 61.6 46 65.2
SalBow4G0670 Salvia bowleyana HOM05D002940 ORTHO05D003344 2.3e-08 61.6 44 70.5
ECA233G0129 Erigeron canadensis HOM05D002940 ORTHO05D003344 3.0e-08 61.2 45 62.2
Oeu030031.1 Olea europaea HOM05D002940 ORTHO05D003344 3.0e-08 61.2 47 61.7
Sed0020376 Sechium edule HOM05D002940 ORTHO05D003344 3.0e-08 61.2 46 63.0
Sc23g0000890 Simmondsia chinensis HOM05D002940 ORTHO05D003344 3.0e-08 61.2 45 68.9
Cc03_g13480 Coffea canephora HOM05D002940 ORTHO05D003344 3.9e-08 60.8 46 65.2
Migut.C01183 Erythranthe guttata HOM05D002940 ORTHO05D003344 3.9e-08 60.8 56 55.4
Nn1g08613 Nelumbo nucifera HOM05D002940 ORTHO05D003344 3.9e-08 60.8 46 63.0
RcHm_v2.0_Chr6g0294611 Rosa chinensis HOM05D002940 ORTHO05D003344 3.9e-08 60.8 45 62.2
MD10G1050100 Malus domestica HOM05D002940 ORTHO05D003344 5.1e-08 60.5 46 63.0
arahy.Tifrunner.gnm1.ann1.QJK9MQ Arachis hypogaea HOM05D002940 ORTHO05D003344 6.6e-08 60.1 46 65.2
Nn1g08919 Nelumbo nucifera HOM05D002940 ORTHO05D003344 6.6e-08 60.1 46 63.0
GSVIVG01008933001 Vitis vinifera HOM05D002940 ORTHO05D003344 6.6e-08 60.1 45 64.4
FvH4_2g26180 Fragaria vesca HOM05D002940 ORTHO05D003344 8.6e-08 59.7 45 60.0
FAN15G3196 Fragaria x ananassa HOM05D002940 ORTHO05D003344 8.6e-08 59.7 45 60.0
FAN20G1615 Fragaria x ananassa HOM05D002940 ORTHO05D003344 8.6e-08 59.7 45 60.0
FAN24G2189 Fragaria x ananassa HOM05D002940 ORTHO05D003344 8.6e-08 59.7 45 60.0
Rhsim11G0065700 Rhododendron simsii HOM05D002940 ORTHO05D003344 8.6e-08 59.7 44 63.6
QL09p037161 Quercus lobata HOM05D002940 ORTHO05D003344 1.1e-07 59.3 45 62.2
arahy.Tifrunner.gnm1.ann1.9W16JB Arachis hypogaea HOM05D002940 ORTHO05D003344 1.5e-07 58.9 46 60.9
FAN27G1674 Fragaria x ananassa HOM05D002940 ORTHO05D003344 1.5e-07 58.9 45 60.0
Medtr3g073140 Medicago truncatula HOM05D002940 ORTHO05D003344 1.5e-07 58.9 47 59.6
vmacro00798 Vaccinium macrocarpon HOM05D002940 ORTHO05D003344 1.5e-07 58.9 48 60.4
Aqoxy6G00147 Aquilegia oxysepala HOM05D002940 ORTHO05D003344 1.9e-07 58.5 51 60.8
MSTRG.25408 Avicennia marina HOM05D002940 ORTHO05D003344 1.9e-07 58.5 44 65.9
Atru.chr13.1331 Acer truncatum HOM05D002940 ORTHO05D000203 2.5e-07 58.2 30 86.7
Atru.chr13.1374 Acer truncatum HOM05D002940 ORTHO05D000203 2.5e-07 58.2 30 86.7
ATR0684G219 Amborella trichopoda HOM05D002940 ORTHO05D003344 2.5e-07 58.2 48 56.2
arahy.Tifrunner.gnm1.ann1.143H5D Arachis hypogaea HOM05D002940 ORTHO05D003344 2.5e-07 58.2 46 60.9
arahy.Tifrunner.gnm1.ann1.67PGGN Arachis hypogaea HOM05D002940 ORTHO05D003344 2.5e-07 58.2 46 63.0
arahy.Tifrunner.gnm1.ann1.W3FNGG Arachis hypogaea HOM05D002940 ORTHO05D003344 2.5e-07 58.2 46 58.7
DCAR_002816 Daucus carota HOM05D002940 ORTHO05D003344 2.5e-07 58.2 43 62.8
Hma1.2p1_0842F.1_g227130 Hydrangea macrophylla HOM05D002940 ORTHO05D003344 2.5e-07 58.2 28 89.3
SGA_v2.0_scaffold24G10501 Striga asiatica HOM05D000137 ORTHO05D001732 2.5e-07 58.2 34 76.5
TPR.G29521 Trifolium pratense HOM05D002940 ORTHO05D003344 2.5e-07 58.2 47 59.6
SEGI_00658 Sequoiadendron giganteum HOM05D002940 ORTHO05D003344 5.6e-07 57.0 38 68.4
arahy.Tifrunner.gnm1.ann1.0AWG64 Arachis hypogaea HOM05D000444 ORTHO05D003344 9.5e-07 56.2 28 89.3
arahy.Tifrunner.gnm1.ann1.KT2W2L Arachis hypogaea HOM05D002940 ORTHO05D003344 9.5e-07 56.2 46 63.0
arahy.Tifrunner.gnm1.ann1.VZ45Z4 Arachis hypogaea HOM05D002940 ORTHO05D003344 9.5e-07 56.2 38 73.7
Peaxi162Scf00421g00412 Petunia axillaris HOM05D002940 ORTHO05D003344 1.2e-06 55.8 56 48.2
Nn1g08918 Nelumbo nucifera HOM05D002940 ORTHO05D003344 1.6e-06 55.5 56 55.4
Actinidia03500 Actinidia chinensis HOM05D002940 ORTHO05D003344 2.1e-06 55.1 27 88.9
AagrBONN_evm.TU.Sc2ySwM_362.140 Anthoceros agrestis HOM05D002940 ORTHO05D003344 2.1e-06 55.1 62 50.0
EL10Ac1g00030 Beta vulgaris HOM05D002940 ORTHO05D003344 2.1e-06 55.1 45 60.0
AUR62004702 Chenopodium quinoa HOM05D002940 ORTHO05D003344 2.1e-06 55.1 28 85.7
arahy.Tifrunner.gnm1.ann1.3W5UW3 Arachis hypogaea HOM05D002940 ORTHO05D003344 2.8e-06 54.7 35 74.3
Nitab4.5_0001474g0080 Nicotiana tabacum HOM05D002940 ORTHO05D003344 2.8e-06 54.7 56 50.0
Oeu005371.1 Olea europaea HOM05D002940 ORTHO05D003344 2.8e-06 54.7 28 82.1
SMO364G0129 Selaginella moellendorffii HOM05D002940 ORTHO05D003344 3.6e-06 54.3 28 85.7
Solyc05g005880.2 Solanum lycopersicum HOM05D002940 ORTHO05D003344 3.6e-06 54.3 34 67.6
Sopen05g001900 Solanum pennellii HOM05D002940 ORTHO05D003344 3.6e-06 54.3 34 67.6
Mapoly0001s0161 Marchantia polymorpha HOM05D002940 ORTHO05D003344 4.7e-06 53.9 55 54.5
Hund27050 Selenicereus undatus HOM05D002940 ORTHO05D003344 4.7e-06 53.9 28 82.1
PGSC0003DMG400004122 Solanum tuberosum HOM05D002940 ORTHO05D003344 4.7e-06 53.9 27 81.5
CBR_g31492 Chara braunii HOM05D002940 ORTHO05D003344 6.2e-06 53.5 51 51.0
AUR62023618 Chenopodium quinoa HOM05D002940 ORTHO05D003344 6.2e-06 53.5 27 85.2
Nitab4.5_0004963g0040 Nicotiana tabacum HOM05D002940 ORTHO05D003344 6.2e-06 53.5 28 78.6


User provided reference genes

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