Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 3.0e-117 425.6 294 100.0
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 1.7e-88 330.1 299 80.9
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 3.1e-69 266.2 335 62.4
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 4.2e-66 255.8 340 58.8
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 7.1e-66 255.0 320 62.8
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 1.3e-64 250.8 303 68.6
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 1.3e-62 244.2 329 62.6
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 1.4e-61 240.7 347 58.5
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 1.4e-61 240.7 347 58.5
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 1.4e-61 240.7 347 58.5
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 1.2e-60 237.7 340 60.3
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 7.1e-58 228.4 340 58.8
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 2.1e-57 226.9 347 52.4
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 2.7e-57 226.5 306 58.5
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 3.5e-57 226.1 306 58.5
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 6.2e-54 215.3 306 56.5
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 6.7e-48 195.3 331 51.4
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 9.3e-42 174.9 390 43.1
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 1.0e-40 171.4 377 43.0
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 1.2e-28 131.3 412 35.0
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 7.7e-28 128.6 122 56.6
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 7.7e-28 128.6 343 36.4
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 2.2e-27 127.1 313 42.5
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 5.0e-27 125.9 324 39.8
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 5.0e-27 125.9 99 69.7
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 1.1e-26 124.8 337 33.8
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 1.9e-26 124.0 348 40.5
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 2.5e-26 123.6 100 68.0
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 2.5e-26 123.6 100 68.0
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 3.6e-25 119.8 298 33.9
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 7.9e-25 118.6 349 31.8
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 1.0e-24 118.2 100 65.0
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 1.8e-24 117.5 100 64.0
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 1.8e-24 117.5 353 40.8
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 5.1e-24 115.9 101 61.4
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 8.8e-24 115.2 293 42.7
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.5e-23 114.4 348 35.1
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 2.6e-23 113.6 354 32.5
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 7.4e-23 112.1 102 64.7
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 7.4e-23 112.1 102 64.7
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 9.7e-23 111.7 102 63.7
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 9.7e-23 111.7 342 34.8
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 9.7e-23 111.7 348 31.0
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 1.3e-22 111.3 102 64.7
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 1.3e-22 111.3 101 61.4
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 1.7e-22 110.9 125 52.8
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 1.7e-22 110.9 102 63.7
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 1.7e-22 110.9 101 64.4
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 2.2e-22 110.5 124 50.8
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 2.8e-22 110.2 102 63.7
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 3.7e-22 109.8 100 63.0
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 4.8e-22 109.4 127 54.3
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 4.8e-22 109.4 96 64.6
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 4.8e-22 109.4 102 63.7
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 6.3e-22 109.0 102 62.7
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 6.3e-22 109.0 102 63.7
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 8.2e-22 108.6 348 29.6
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 8.2e-22 108.6 99 59.6
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 8.2e-22 108.6 381 29.9
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 8.2e-22 108.6 101 60.4
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 1.1e-21 108.2 93 62.4
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 1.1e-21 108.2 90 63.3
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 1.4e-21 107.8 101 63.4
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 1.4e-21 107.8 102 61.8
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 1.8e-21 107.5 101 62.4
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 1.8e-21 107.5 102 60.8
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 1.8e-21 107.5 125 54.4
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 2.4e-21 107.1 100 63.0
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 3.1e-21 106.7 102 62.7
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 3.1e-21 106.7 101 62.4
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 3.1e-21 106.7 101 62.4
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 3.1e-21 106.7 101 62.4
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 4.1e-21 106.3 101 61.4
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 5.3e-21 105.9 101 58.4
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 5.3e-21 105.9 99 60.6
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 5.3e-21 105.9 96 60.4
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 5.3e-21 105.9 102 61.8
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 6.9e-21 105.5 124 48.4
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 1.2e-20 104.8 101 56.4
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 1.5e-20 104.4 102 60.8
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 1.5e-20 104.4 93 62.4
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 2.6e-20 103.6 88 64.8
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 2.6e-20 103.6 119 52.1
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 3.4e-20 103.2 99 60.6
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 3.4e-20 103.2 79 68.4
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 4.5e-20 102.8 88 62.5
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 4.5e-20 102.8 101 58.4
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 4.5e-20 102.8 379 29.8
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 5.9e-20 102.4 86 66.3
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 7.7e-20 102.1 99 57.6
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 1.7e-19 100.9 102 56.9
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 1.7e-19 100.9 104 60.6
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 1.7e-19 100.9 100 57.0
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 2.2e-19 100.5 97 62.9
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 2.2e-19 100.5 100 57.0
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 2.2e-19 100.5 97 57.7
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 2.9e-19 100.1 360 38.9
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 2.9e-19 100.1 103 57.3
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 3.8e-19 99.8 342 33.3
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 5.0e-19 99.4 90 61.1
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 5.0e-19 99.4 99 57.6
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 8.5e-19 98.6 370 37.3
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 1.4e-18 97.8 345 37.7
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 1.4e-18 97.8 334 39.8
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 1.4e-18 97.8 104 56.7
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 5.5e-18 95.9 374 30.2
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 7.2e-18 95.5 127 42.5
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 7.2e-18 95.5 387 32.0
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.6e-17 94.4 81 60.5
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.6e-17 94.4 81 60.5
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 3.6e-17 93.2 111 51.4
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 4.7e-17 92.8 76 63.2
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 7.9e-17 92.0 90 58.9
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-15 88.2 77 61.0
C07p10770 Brassica napus HOM05D018474 ORTHO05D027757 2.6e-15 87.0 154 46.8
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 4.4e-15 86.3 80 55.0
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 9.7e-15 85.1 81 55.6
BolC7t41545H Brassica oleracea HOM05D018474 ORTHO05D027757 9.7e-15 85.1 153 46.4
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 3.7e-14 83.2 118 47.5
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 1.1e-13 81.6 61 68.9
BcaC06g35794 Brassica carinata HOM05D018474 ORTHO05D027757 3.1e-13 80.1 260 31.2
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 1.2e-12 78.2 167 35.3
BolC7t41550H Brassica oleracea HOM05D018474 ORTHO05D027757 1.3e-11 74.7 154 44.2
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 1.5e-10 71.2 79 54.4
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 1.6e-09 67.8 89 50.6
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 2.7e-09 67.0 50 64.0
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 3.3e-07 60.1 116 39.7
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 9.7e-07 58.5 34 82.4
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 9.7e-07 58.5 34 82.4
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 4.8e-06 56.2 45 62.2


User provided reference genes

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