Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 4.9e-60 234.6 115 100.0
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 1.1e-59 233.4 115 98.3
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 4.2e-59 231.5 114 99.1
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 1.9e-56 222.6 114 93.9
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 1.9e-56 222.6 115 93.0
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 2.5e-56 222.2 114 93.9
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 7.4e-56 220.7 115 91.3
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 7.4e-56 220.7 115 91.3
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 7.4e-56 220.7 115 91.3
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 7.4e-56 220.7 115 91.3
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 8.1e-55 217.2 114 91.2
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 1.1e-54 216.9 115 90.4
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 4.5e-53 211.5 113 88.5
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 4.5e-53 211.5 113 88.5
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 4.5e-53 211.5 113 88.5
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 9.9e-53 210.3 109 90.8
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 1.3e-52 209.9 113 87.6
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 1.3e-52 209.9 113 87.6
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 2.7e-50 202.2 115 85.2
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 4.3e-48 194.9 115 79.1
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 5.6e-48 194.5 115 80.0
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 9.6e-48 193.7 115 79.1
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 9.6e-48 193.7 115 80.9
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 4.8e-47 191.4 115 78.3
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 6.2e-47 191.0 115 77.4
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 1.1e-46 190.3 115 75.7
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 1.1e-46 190.3 115 75.7
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.1e-46 190.3 115 76.5
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.1e-46 190.3 115 76.5
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 1.4e-46 189.9 115 76.5
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 1.4e-46 189.9 115 76.5
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.8e-46 189.5 115 77.4
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.8e-46 189.5 115 77.4
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 4.0e-46 188.3 115 76.5
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 4.0e-46 188.3 115 76.5
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 4.0e-46 188.3 115 77.4
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 5.3e-46 188.0 117 77.8
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 1.2e-45 186.8 115 74.8
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 1.2e-45 186.8 115 74.8
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 1.2e-45 186.8 115 76.5
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 1.2e-45 186.8 115 76.5
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.2e-45 186.8 115 75.7
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.5e-45 186.4 115 75.7
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 2.0e-45 186.0 115 76.5
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 2.0e-45 186.0 115 74.8
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 2.0e-45 186.0 115 74.8
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 2.6e-45 185.7 115 76.5
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 3.4e-45 185.3 109 78.9
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 3.4e-45 185.3 117 74.4
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 3.4e-45 185.3 115 73.0
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 4.5e-45 184.9 115 75.7
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 5.8e-45 184.5 115 73.0
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 7.6e-45 184.1 115 75.7
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 1.3e-44 183.3 115 73.0
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 1.3e-44 183.3 115 73.9
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 1.3e-44 183.3 115 73.0
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 1.7e-44 183.0 115 74.8
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 2.2e-44 182.6 115 72.2
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 2.9e-44 182.2 115 73.9
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 2.9e-44 182.2 115 73.0
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 3.8e-44 181.8 115 73.9
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 3.8e-44 181.8 115 72.2
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 6.5e-44 181.0 115 70.4
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 1.9e-43 179.5 115 73.9
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 2.5e-43 179.1 117 72.6
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 3.2e-43 178.7 115 71.3
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 4.2e-43 178.3 123 71.5
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 4.2e-43 178.3 115 70.4
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 5.5e-43 177.9 115 72.2
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 5.5e-43 177.9 115 70.4
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 7.1e-43 177.6 115 73.0
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 7.1e-43 177.6 115 72.2
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 7.1e-43 177.6 115 72.2
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 7.1e-43 177.6 115 72.2
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 1.2e-42 176.8 115 72.2
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 1.2e-42 176.8 115 70.4
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 1.6e-42 176.4 115 71.3
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 2.1e-42 176.0 115 69.6
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 2.7e-42 175.6 115 69.6
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 2.7e-42 175.6 114 71.9
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 2.7e-42 175.6 114 71.9
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 2.7e-42 175.6 115 72.2
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 3.5e-42 175.3 112 72.3
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 3.5e-42 175.3 115 71.3
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 3.5e-42 175.3 115 71.3
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 3.5e-42 175.3 115 69.6
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 4.6e-42 174.9 115 71.3
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 4.6e-42 174.9 115 69.6
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 4.6e-42 174.9 115 70.4
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 6.0e-42 174.5 115 69.6
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 6.0e-42 174.5 115 71.3
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 1.0e-41 173.7 112 73.2
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 1.3e-41 173.3 115 71.3
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 1.3e-41 173.3 115 71.3
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 1.3e-41 173.3 115 71.3
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 1.3e-41 173.3 115 70.4
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 1.8e-41 172.9 115 67.8
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 1.8e-41 172.9 115 68.7
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 1.8e-41 172.9 109 74.3
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 2.3e-41 172.6 109 73.4
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 3.0e-41 172.2 115 71.3
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 3.0e-41 172.2 109 72.5
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 3.0e-41 172.2 115 70.4
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 3.0e-41 172.2 109 74.3
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 3.9e-41 171.8 115 70.4
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 6.7e-41 171.0 109 72.5
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 1.1e-40 170.2 115 67.8
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 1.5e-40 169.9 115 66.1
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 7.4e-40 167.5 117 66.7
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 7.4e-40 167.5 109 72.5
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 9.7e-40 167.2 96 83.3
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 1.3e-39 166.8 116 69.8
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 2.2e-39 166.0 108 68.5
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 2.2e-39 166.0 108 68.5
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 1.8e-38 162.9 116 69.0
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 4.1e-38 161.8 106 72.6
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 5.3e-38 161.4 116 68.1
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 4.5e-37 158.3 112 67.9
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 1.9e-35 152.9 122 65.6
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 1.0e-33 147.1 97 68.0
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 3.0e-33 145.6 97 71.1
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 1.9e-32 142.9 91 72.5
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 2.8e-31 139.0 93 67.7
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 5.9e-29 131.3 105 66.7
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 7.7e-29 131.0 106 59.4
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 3.6e-26 122.1 107 59.8
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 1.8e-25 119.8 115 56.5
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 3.9e-25 118.6 59 91.5
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 8.8e-25 117.5 106 56.6
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 1.2e-21 107.1 95 55.8
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 2.6e-21 105.9 67 70.1
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 6.5e-20 101.3 115 45.2
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 8.5e-20 100.9 65 76.9
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 1.1e-19 100.5 59 72.9
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 1.4e-19 100.1 100 52.0
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 5.5e-19 98.2 105 48.6
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 2.7e-18 95.9 70 62.9
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 1.4e-17 93.6 74 59.5
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 2.6e-16 89.4 58 72.4
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 5.7e-16 88.2 57 73.7
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 9.1e-14 80.9 56 73.2
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 7.7e-13 77.8 111 41.4
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 8.5e-12 74.3 101 40.6
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 3.2e-11 72.4 56 67.9
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 9.4e-11 70.9 75 50.7
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 2.7e-10 69.3 59 52.5
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 3.6e-10 68.9 82 48.8
A08p09670 Brassica napus HOM05D005190 ORTHO05D006183 9.7e-08 60.8 50 64.0


User provided reference genes

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