Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 0.0e+00 1079.3 535 100.0
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 4.3e-295 1017.3 540 93.7
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 3.0e-280 968.0 545 88.3
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 3.9e-280 967.6 536 88.6
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 3.1e-277 958.0 550 86.7
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 6.4e-275 950.3 541 86.9
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 4.3e-271 937.6 541 85.4
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 3.8e-267 924.5 539 85.2
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 7.9e-265 916.8 541 83.9
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 7.9e-265 916.8 541 84.8
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.2e-252 876.3 540 82.4
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.7e-251 872.5 541 79.7
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 7.2e-218 760.8 537 70.9
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 6.6e-195 684.5 451 76.7
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 9.5e-194 680.6 539 63.5
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.7e-190 669.8 539 61.0
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.9e-190 669.1 546 62.3
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 4.6e-188 661.8 538 60.4
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 2.3e-187 659.4 539 62.7
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 3.0e-187 659.1 541 61.4
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 3.9e-187 658.7 545 61.1
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 6.6e-187 657.9 557 61.0
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 8.6e-187 657.5 537 60.9
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 1.5e-186 656.8 539 61.0
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.5e-186 656.8 542 61.4
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.9e-186 656.4 541 62.7
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.5e-186 656.0 536 62.1
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.5e-186 656.0 536 62.1
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 4.3e-186 655.2 539 62.9
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 7.3e-186 654.4 542 61.1
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 7.3e-186 654.4 547 60.0
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 9.5e-186 654.1 557 59.6
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 9.5e-186 654.1 545 59.6
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 1.2e-185 653.7 547 62.2
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.2e-185 653.7 537 61.3
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 3.6e-185 652.1 550 60.0
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 3.6e-185 652.1 549 60.5
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 6.2e-185 651.4 565 58.9
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.8e-184 649.8 544 61.2
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 2.3e-184 649.4 547 60.0
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 2.3e-184 649.4 571 58.5
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 3.1e-184 649.0 544 62.1
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.1e-184 649.0 540 60.9
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 3.1e-184 649.0 538 61.3
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 5.2e-184 648.3 571 58.3
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.2e-183 647.1 552 59.4
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 2.6e-183 646.0 550 60.5
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 3.4e-183 645.6 561 59.2
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.4e-183 645.2 536 61.6
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.4e-183 645.2 536 61.6
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.4e-183 645.2 549 59.4
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 5.8e-183 644.8 545 60.2
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.3e-182 643.7 539 62.5
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.3e-182 643.7 542 60.7
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.7e-182 643.3 539 59.7
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 3.8e-182 642.1 566 58.3
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 3.8e-182 642.1 566 58.3
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 6.4e-182 641.3 540 60.6
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.1e-181 640.6 556 58.8
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 1.9e-181 639.8 550 58.2
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 3.2e-181 639.0 565 58.1
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 4.1e-181 638.6 540 59.6
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.6e-180 636.7 540 60.7
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 2.7e-180 636.0 557 58.9
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 4.6e-180 635.2 549 59.7
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 7.8e-180 634.4 540 59.3
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 3.0e-179 632.5 550 59.6
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 6.6e-179 631.3 539 60.3
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 8.6e-179 630.9 562 57.5
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 4.3e-178 628.6 548 56.2
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.2e-177 627.1 547 61.1
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 6.2e-177 624.8 537 59.8
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.1e-176 624.0 542 60.3
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-176 624.0 539 59.9
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.1e-176 624.0 543 58.4
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 1.1e-176 624.0 539 58.1
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.4e-176 623.6 541 59.0
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.8e-176 623.2 538 59.9
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.0e-176 620.9 539 59.6
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 9.0e-176 620.9 542 59.0
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.2e-175 620.5 510 61.2
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 3.4e-175 619.0 543 56.9
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 4.4e-175 618.6 539 58.1
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 9.3e-173 610.9 517 60.2
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 3.5e-172 609.0 568 56.2
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 8.7e-171 604.4 558 58.4
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.5e-170 603.6 542 58.5
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.5e-170 603.6 548 56.2
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.9e-170 603.2 539 57.3
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 4.3e-170 602.1 537 57.9
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 7.3e-170 601.3 554 59.0
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 6.2e-169 598.2 554 58.3
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 1.1e-168 597.4 556 54.9
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.8e-168 596.7 533 57.8
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 9.0e-168 594.3 539 57.0
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.0e-167 593.2 563 54.9
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.7e-166 590.1 539 56.4
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.3e-163 579.7 540 55.0
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 3.9e-163 578.9 538 56.3
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.5e-162 576.2 505 57.0
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.3e-162 575.9 491 57.2
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 2.2e-158 563.1 483 57.8
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.1e-157 560.8 515 54.0
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.6e-156 557.0 535 52.9
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 3.0e-155 552.7 551 54.1
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.1e-154 550.8 482 58.9
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 1.5e-154 550.4 431 63.3
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 4.3e-154 548.9 499 57.1
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 5.5e-149 531.9 470 59.1
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 1.0e-147 527.7 460 57.0
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 1.0e-147 527.7 421 62.7
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 3.8e-142 509.2 411 61.1
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 2.5e-141 506.5 553 56.2
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 2.1e-140 503.4 536 50.9
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.1e-130 471.1 322 69.9
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 1.1e-130 471.1 302 74.5
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 2.0e-130 470.3 322 69.3
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 3.6e-124 449.5 314 68.8
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 4.7e-124 449.1 323 65.3
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.6e-114 416.8 299 65.6
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.1e-112 411.4 547 39.3
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 4.1e-112 409.5 411 52.3
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.9e-109 400.6 533 41.8
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 2.7e-108 396.7 363 61.4
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.5e-106 391.0 598 38.5
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 1.4e-96 357.8 257 68.9
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 1.8e-96 357.5 252 67.9
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 2.5e-93 347.1 249 67.1
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 3.6e-92 343.2 289 65.7
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 1.3e-81 308.1 267 64.8
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 8.3e-81 305.4 267 64.4
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.0e-78 298.5 208 68.3
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 3.9e-78 296.6 330 49.4
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 9.9e-74 282.0 210 65.2
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.6e-71 274.6 229 59.0
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 5.1e-70 269.6 196 71.9
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 2.4e-59 234.2 155 69.7
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 2.4e-59 234.2 155 69.7
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 2.0e-58 231.1 177 67.2
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 2.6e-58 230.7 124 82.3
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-48 196.8 462 29.7
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.3e-46 191.8 106 78.3
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 1.9e-45 188.0 238 45.8
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 6.2e-44 183.0 202 46.5
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 2.5e-37 161.0 305 34.1
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.6e-36 158.3 101 75.2
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 2.4e-35 154.5 191 45.5
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 2.4e-35 154.5 76 89.5
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 2.4e-35 154.5 76 89.5
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 1.7e-33 148.3 176 46.0
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 8.4e-33 146.0 85 75.3
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 1.4e-32 145.2 276 34.4
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 5.5e-32 143.3 175 45.7
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 9.3e-32 142.5 109 67.9
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 3.0e-30 137.5 179 48.0
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.9e-29 134.8 183 42.1
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 2.4e-27 127.9 92 60.9
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.1e-27 127.5 98 61.2
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 2.9e-25 120.9 72 81.9
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 9.4e-24 115.9 92 62.0
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 3.3e-21 107.5 59 78.0
C09p46170 Brassica napus HOM05D004336 ORTHO05D040132 8.2e-12 76.3 51 70.6
BolC9t57482H Brassica oleracea HOM05D004336 ORTHO05D040132 8.2e-12 76.3 51 70.6
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 3.5e-10 70.9 108 36.1
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.0e-06 59.3 34 85.3
Eucgr.F00781 Eucalyptus grandis HOM05D004336 ORTHO05D192954 1.4e-06 58.9 62 50.0


User provided reference genes

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