Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 7.0e-185 650.6 353 100.0
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 9.4e-174 613.6 357 95.2
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 2.8e-170 602.1 357 93.0
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 1.5e-166 589.7 358 90.5
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 7.2e-166 587.4 358 89.4
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 1.4e-164 583.2 359 89.1
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 6.8e-164 580.9 360 88.6
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 2.0e-163 579.3 360 88.6
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 5.7e-163 577.8 358 88.8
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 7.5e-163 577.4 361 88.6
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 1.1e-158 563.5 382 83.5
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 5.6e-158 561.2 361 85.9
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 5.6e-158 561.2 387 82.2
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 3.0e-135 485.7 364 76.9
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 1.1e-129 467.2 353 73.7
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 1.7e-127 459.9 354 72.3
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 3.3e-126 455.7 364 71.4
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 4.3e-126 455.3 363 71.9
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 2.8e-125 452.6 362 71.8
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 2.4e-124 449.5 365 69.9
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 2.0e-123 446.4 345 74.5
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 3.4e-123 445.7 350 73.4
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 9.9e-123 444.1 301 81.4
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 9.9e-123 444.1 381 67.7
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 1.7e-122 443.4 302 79.1
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 3.8e-122 442.2 381 67.5
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 6.4e-122 441.4 363 70.0
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 8.4e-122 441.0 357 69.7
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 1.1e-121 440.7 321 76.6
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 1.1e-121 440.7 306 79.7
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 3.2e-121 439.1 364 68.7
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 4.2e-121 438.7 367 69.5
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 4.2e-121 438.7 320 77.2
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 5.4e-121 438.3 362 70.4
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 7.1e-121 438.0 300 79.3
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 7.1e-121 438.0 303 79.9
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 7.1e-121 438.0 300 79.7
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 7.1e-121 438.0 300 79.7
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 2.7e-120 436.0 302 79.1
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 3.5e-120 435.6 278 83.5
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 4.6e-120 435.3 303 75.9
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 4.6e-120 435.3 297 79.5
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 6.0e-120 434.9 278 83.5
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 1.7e-119 433.3 363 68.0
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 1.7e-119 433.3 298 76.2
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 2.3e-119 433.0 298 77.2
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.9e-119 432.2 264 86.7
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 5.1e-119 431.8 312 77.2
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 6.6e-119 431.4 348 71.0
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 1.1e-118 430.6 331 72.8
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 1.5e-118 430.3 313 76.7
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 3.3e-118 429.1 287 82.2
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 5.6e-118 428.3 314 76.1
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 7.3e-118 427.9 265 86.8
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 7.3e-118 427.9 305 76.7
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 7.3e-118 427.9 289 80.3
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 9.6e-118 427.6 325 72.3
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 1.3e-117 427.2 287 81.9
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 1.3e-117 427.2 263 87.5
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 1.3e-117 427.2 296 79.1
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 1.3e-117 427.2 348 70.4
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 1.6e-117 426.8 317 75.1
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 2.8e-117 426.0 334 71.6
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 2.8e-117 426.0 301 77.4
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 2.8e-117 426.0 294 78.2
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 4.8e-117 425.2 311 75.9
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 4.8e-117 425.2 356 68.5
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 4.8e-117 425.2 330 73.9
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 1.8e-116 423.3 304 76.0
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 1.8e-116 423.3 339 70.5
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 2.4e-116 422.9 304 77.0
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 1.5e-115 420.2 316 75.0
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 1.5e-115 420.2 293 78.5
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 2.0e-115 419.9 310 73.9
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 2.6e-115 419.5 303 76.2
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.3e-114 417.2 284 81.3
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 6.4e-114 414.8 298 77.2
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 2.4e-113 412.9 303 74.9
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 3.2e-113 412.5 291 78.4
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 5.1e-111 405.2 322 72.0
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 3.3e-110 402.5 290 75.2
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 1.6e-109 400.2 299 74.6
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 2.1e-109 399.8 327 70.6
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 4.0e-108 395.6 280 76.8
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 4.9e-106 388.7 373 60.9
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 1.6e-104 383.6 327 67.6
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 8.7e-103 377.9 310 71.0
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 9.6e-102 374.4 285 74.7
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 1.6e-101 373.6 267 75.3
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 2.1e-101 373.2 238 83.6
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.1e-100 370.9 283 72.8
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 1.8e-100 370.2 252 77.8
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 2.4e-100 369.8 266 75.9
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 6.9e-100 368.2 284 72.9
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 6.9e-100 368.2 290 72.1
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 7.6e-99 364.8 289 72.7
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 6.0e-96 355.1 324 63.6
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 1.0e-95 354.4 393 57.3
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 1.0e-95 354.4 266 74.1
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 2.3e-95 353.2 393 57.0
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 2.3e-95 353.2 225 83.6
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 5.7e-94 348.6 258 72.1
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 2.7e-88 329.7 321 61.7
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 2.3e-87 326.6 240 73.8
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.0e-87 326.2 196 85.7
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 8.2e-85 318.2 275 66.5
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 2.9e-82 309.7 219 78.1
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 8.8e-79 298.1 303 57.1
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.6e-72 277.3 247 65.6
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 5.7e-70 268.9 231 69.7
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 9.7e-70 268.1 276 56.2
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 5.3e-68 262.3 245 58.0
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 6.5e-66 255.4 284 57.4
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 4.2e-65 252.7 231 68.0
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.2e-62 244.6 270 54.8
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 1.3e-61 241.1 286 50.0
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 6.3e-53 212.2 171 69.6
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 1.2e-51 208.0 140 84.3
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 2.6e-46 190.3 135 76.3
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.3e-41 173.3 98 89.8
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 4.0e-39 166.4 142 69.0
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 1.3e-34 151.4 93 83.9
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 2.3e-34 150.6 204 52.5
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 9.5e-33 145.2 157 58.0
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 2.8e-32 143.7 157 57.3
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 3.2e-28 130.2 115 64.3
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 2.4e-20 104.0 80 68.8
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 3.3e-17 93.6 96 58.3
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 6.2e-16 89.4 60 78.3
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 1.4e-12 78.2 225 32.0
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 1.7e-10 71.2 47 76.6
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 4.4e-06 56.6 29 100.0
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 9.9e-06 55.5 31 90.3


User provided reference genes

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