Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 3.7e-24 114.0 56 100.0
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 5.4e-23 110.2 56 94.6
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 1.2e-22 109.0 56 91.1
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.0e-21 105.9 54 90.7
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 1.7e-21 105.1 54 88.9
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 2.3e-21 104.8 54 88.9
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 2.3e-21 104.8 54 88.9
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 2.3e-21 104.8 54 88.9
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 5.0e-21 103.6 54 88.9
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.5e-20 102.1 54 87.0
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 1.9e-20 101.7 54 87.0
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 1.9e-20 101.7 54 87.0
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.9e-20 101.7 54 85.2
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 2.5e-20 101.3 56 83.9
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 3.3e-20 100.9 55 80.0
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 3.3e-20 100.9 54 85.2
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 4.3e-20 100.5 54 85.2
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 4.3e-20 100.5 54 85.2
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 4.3e-20 100.5 54 83.3
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 7.3e-20 99.8 54 83.3
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 9.5e-20 99.4 54 83.3
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.2e-19 99.0 54 83.3
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 1.2e-19 99.0 54 83.3
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 1.2e-19 99.0 54 83.3
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 1.2e-19 99.0 54 85.2
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 1.2e-19 99.0 54 83.3
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 1.6e-19 98.6 54 83.3
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 2.1e-19 98.2 54 81.5
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 2.1e-19 98.2 54 83.3
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 2.8e-19 97.8 55 80.0
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 2.8e-19 97.8 54 81.5
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 2.8e-19 97.8 56 82.1
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 4.7e-19 97.1 54 81.5
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 4.7e-19 97.1 54 81.5
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 4.7e-19 97.1 54 83.3
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 4.7e-19 97.1 54 81.5
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 4.7e-19 97.1 54 79.6
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 6.1e-19 96.7 54 77.8
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 8.0e-19 96.3 54 81.5
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 8.0e-19 96.3 54 79.6
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 8.0e-19 96.3 54 79.6
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 8.0e-19 96.3 54 77.8
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 8.0e-19 96.3 54 79.6
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 8.0e-19 96.3 54 79.6
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 8.0e-19 96.3 54 79.6
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 8.0e-19 96.3 54 83.3
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 1.0e-18 95.9 54 79.6
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 1.0e-18 95.9 54 79.6
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 1.0e-18 95.9 54 79.6
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 1.0e-18 95.9 56 80.4
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 1.0e-18 95.9 56 80.4
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 1.0e-18 95.9 54 79.6
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.0e-18 95.9 54 79.6
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 1.0e-18 95.9 54 79.6
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 1.0e-18 95.9 54 79.6
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 1.0e-18 95.9 53 81.1
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.4e-18 95.5 54 77.8
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 1.8e-18 95.1 54 75.9
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 1.8e-18 95.1 54 77.8
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 1.8e-18 95.1 54 79.6
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 1.8e-18 95.1 54 77.8
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 2.3e-18 94.7 54 79.6
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 2.3e-18 94.7 54 77.8
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 3.1e-18 94.4 54 75.9
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 3.1e-18 94.4 54 77.8
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.1e-18 94.4 53 79.2
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 3.1e-18 94.4 54 75.9
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 3.1e-18 94.4 54 75.9
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 4.0e-18 94.0 54 75.9
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 4.0e-18 94.0 54 79.6
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 5.2e-18 93.6 54 75.9
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 5.2e-18 93.6 54 74.1
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 5.2e-18 93.6 54 77.8
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 5.2e-18 93.6 53 75.5
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 6.8e-18 93.2 56 76.8
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 6.8e-18 93.2 54 75.9
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 6.8e-18 93.2 54 79.6
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 8.9e-18 92.8 56 78.6
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 8.9e-18 92.8 54 75.9
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 8.9e-18 92.8 53 77.4
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 8.9e-18 92.8 54 75.9
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 8.9e-18 92.8 54 75.9
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 8.9e-18 92.8 54 74.1
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.2e-17 92.4 54 72.2
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.2e-17 92.4 54 72.2
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.2e-17 92.4 54 75.9
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 1.5e-17 92.0 54 74.1
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 1.5e-17 92.0 56 73.2
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 2.0e-17 91.7 55 76.4
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 2.0e-17 91.7 55 76.4
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 2.0e-17 91.7 54 72.2
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 2.0e-17 91.7 56 73.2
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 2.6e-17 91.3 54 75.9
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 2.6e-17 91.3 53 73.6
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 2.6e-17 91.3 54 74.1
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 2.6e-17 91.3 54 75.9
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 3.4e-17 90.9 56 69.6
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 3.4e-17 90.9 56 73.2
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 5.8e-17 90.1 54 70.4
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 5.8e-17 90.1 54 74.1
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 7.5e-17 89.7 55 72.7
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 7.5e-17 89.7 54 70.4
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 7.5e-17 89.7 53 71.7
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 9.8e-17 89.4 55 72.7
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 9.8e-17 89.4 55 72.7
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 9.8e-17 89.4 55 72.7
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 9.8e-17 89.4 55 72.7
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 9.8e-17 89.4 55 72.7
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 9.8e-17 89.4 53 73.6
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 9.8e-17 89.4 53 73.6
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.7e-16 88.6 53 69.8
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.7e-16 88.6 54 72.2
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 4.9e-16 87.0 56 67.9
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 6.4e-16 86.7 51 74.5
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 8.3e-16 86.3 53 71.7
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 8.3e-16 86.3 53 71.7
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 1.1e-15 85.9 52 71.2
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 1.4e-15 85.5 54 66.7
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.9e-15 85.1 54 66.7
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 2.4e-15 84.7 56 71.4
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 2.4e-15 84.7 56 71.4
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 2.4e-15 84.7 56 71.4
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 2.4e-15 84.7 56 71.4
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.4e-15 84.7 54 70.4
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 4.1e-15 84.0 54 64.8
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 9.2e-15 82.8 54 66.7
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 1.6e-14 82.0 54 66.7
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 2.7e-14 81.3 54 63.0
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 3.5e-14 80.9 50 68.0
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 6.0e-14 80.1 54 63.0
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 6.0e-14 80.1 54 63.0
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 7.8e-14 79.7 54 63.0
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 1.3e-13 79.0 54 63.0
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 5.0e-13 77.0 53 58.5
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 4.3e-12 73.9 54 55.6
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 5.6e-12 73.6 54 57.4
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.2e-11 72.4 54 55.6
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 2.8e-11 71.2 47 63.8
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 2.3e-10 68.2 52 53.8
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 3.1e-10 67.8 53 52.8
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 2.9e-08 61.2 51 56.9
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.2e-07 57.8 51 54.9
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 4.6e-06 53.9 51 47.1


User provided reference genes

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