Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 0.0e+00 1116.7 583 100.0
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 2.5e-304 1048.1 585 94.9
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 1.1e-291 1006.1 588 90.5
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 1.5e-264 916.0 601 81.2
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 8.9e-262 906.7 591 82.4
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 4.7e-255 884.4 584 80.3
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 6.2e-255 884.0 584 80.3
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 1.4e-254 882.9 584 80.1
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 2.3e-254 882.1 587 80.1
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 8.9e-254 880.2 586 80.0
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 9.9e-237 823.5 607 73.5
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 1.1e-230 803.5 616 70.5
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 9.3e-227 790.4 491 84.9
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 1.4e-201 706.8 583 64.7
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 2.6e-197 692.6 493 71.0
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 2.6e-197 692.6 493 71.0
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 3.2e-195 685.6 570 63.0
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 1.0e-193 680.6 497 69.4
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 2.3e-193 679.5 615 60.8
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 2.3e-193 679.5 484 69.6
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 3.3e-192 675.6 512 68.6
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 7.4e-192 674.5 541 64.9
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 9.7e-192 674.1 513 66.5
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 2.2e-191 672.9 499 69.9
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 4.8e-191 671.8 571 62.5
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 4.8e-191 671.8 489 68.9
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 6.3e-191 671.4 489 69.5
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 8.2e-191 671.0 483 68.9
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 8.2e-191 671.0 483 68.9
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 1.7e-188 663.3 540 65.0
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 2.2e-188 662.9 487 68.6
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 6.5e-188 661.4 583 59.9
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 8.5e-188 661.0 487 68.4
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 8.5e-188 661.0 496 67.7
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 1.5e-187 660.2 546 63.4
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 4.2e-187 658.7 490 67.8
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 1.6e-186 656.8 603 59.5
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 3.0e-185 652.5 536 63.6
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 3.0e-185 652.5 486 68.3
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 1.1e-184 650.6 520 64.0
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 1.7e-183 646.7 505 65.5
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 4.8e-183 645.2 510 64.7
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 7.7e-181 637.9 488 65.6
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 1.1e-179 634.0 531 62.0
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 1.1e-179 634.0 526 63.9
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 5.5e-179 631.7 572 57.9
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 5.5e-179 631.7 523 62.7
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 1.2e-178 630.6 494 66.0
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 1.6e-178 630.2 582 57.6
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 6.1e-178 628.2 544 59.9
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 8.0e-178 627.9 549 61.2
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 8.0e-178 627.9 528 62.1
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 1.0e-177 627.5 528 62.1
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 2.3e-177 626.3 553 60.8
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 5.2e-177 625.2 490 65.7
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 2.0e-176 623.2 512 64.1
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 5.7e-176 621.7 560 59.6
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 7.5e-176 621.3 523 62.1
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 7.5e-176 621.3 517 61.7
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 9.8e-176 620.9 569 58.2
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 4.8e-175 618.6 459 66.7
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 8.3e-175 617.8 576 58.5
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 5.4e-174 615.1 519 63.2
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 1.2e-173 614.0 556 60.1
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 1.6e-173 613.6 541 60.8
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 1.6e-173 613.6 571 57.6
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 2.0e-173 613.2 493 63.3
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 3.5e-173 612.5 556 58.6
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 5.9e-173 611.7 536 60.4
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 6.5e-172 608.2 550 58.9
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 1.2e-170 604.0 518 61.6
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 8.0e-170 601.3 519 62.2
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 3.0e-169 599.4 552 59.1
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 3.4e-168 595.9 570 56.7
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 2.2e-167 593.2 530 59.6
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 1.1e-166 590.9 491 63.5
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 1.6e-165 587.0 490 60.4
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 7.7e-165 584.7 549 59.0
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 1.3e-164 583.9 466 67.0
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 5.0e-164 582.0 601 52.4
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 4.3e-163 578.9 491 60.5
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 2.1e-162 576.6 532 57.3
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 2.8e-162 576.2 465 64.5
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 3.6e-162 575.9 519 58.2
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 8.0e-162 574.7 491 60.5
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.8e-161 573.5 493 62.5
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 2.3e-161 573.2 503 58.4
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 3.0e-161 572.8 503 58.6
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 4.1e-158 562.4 542 55.9
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 5.6e-155 552.0 481 61.5
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 2.1e-154 550.1 495 60.0
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 6.2e-154 548.5 491 62.1
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 8.9e-153 544.7 392 69.1
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 5.8e-152 542.0 499 58.9
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 2.5e-147 526.6 391 69.3
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 2.8e-146 523.1 550 53.1
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 4.0e-145 519.2 523 53.0
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 2.9e-143 513.1 337 80.7
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 3.2e-142 509.6 383 65.5
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 1.6e-138 497.3 414 64.5
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 1.9e-134 483.8 493 55.2
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 1.3e-132 477.6 575 48.3
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 3.9e-132 476.1 490 51.4
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 1.3e-127 461.1 500 52.4
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 1.2e-125 454.5 292 78.1
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.5e-123 447.6 485 49.7
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 7.3e-123 445.3 306 73.5
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 7.1e-118 428.7 369 58.5
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 3.4e-112 409.8 398 54.5
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 1.0e-108 398.3 535 42.1
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 1.5e-104 384.4 368 54.1
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.2e-101 374.8 341 58.1
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 3.0e-100 370.2 194 99.5
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 3.0e-100 370.2 493 42.4
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 3.2e-94 350.1 490 44.1
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 1.0e-92 345.1 289 63.0
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 1.5e-88 331.3 303 57.1
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 3.2e-86 323.6 328 57.0
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 9.4e-86 322.0 269 59.9
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 4.6e-85 319.7 322 56.2
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 3.7e-82 310.1 195 79.5
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 6.3e-82 309.3 562 36.1
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 9.4e-78 295.4 258 59.7
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 8.2e-74 282.3 297 54.9
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 7.0e-73 279.3 326 50.9
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 7.0e-73 279.3 326 50.9
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 3.3e-67 260.4 192 68.2
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 6.5e-63 246.1 353 41.1
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 1.5e-62 245.0 650 29.5
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 1.2e-61 241.9 178 68.5
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 9.1e-57 225.7 230 55.2
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 6.5e-55 219.5 266 44.7
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 3.2e-54 217.2 264 50.8
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 5.5e-54 216.5 155 70.3
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 7.5e-51 206.1 147 74.1
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 4.9e-50 203.4 245 46.1
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.8e-49 201.4 246 45.5
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 1.2e-45 188.7 123 78.0
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 1.3e-42 178.7 157 61.8
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 5.4e-41 173.3 117 75.2
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.9e-38 164.9 337 35.0
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.1e-37 161.4 241 39.8
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 1.2e-35 155.6 176 47.7
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 4.6e-32 143.7 150 54.7
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 1.0e-31 142.5 144 58.3
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 6.8e-28 129.8 253 35.2
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 7.8e-24 116.3 130 46.9
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 5.6e-22 110.2 140 46.4
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 9.5e-22 109.4 103 57.3
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 3.2e-17 94.4 98 48.0
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 3.2e-17 94.4 135 40.0
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 1.3e-15 89.0 51 80.4
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 5.1e-15 87.0 51 78.4
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 5.1e-15 87.0 54 70.4
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 1.5e-14 85.5 50 82.0
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 2.5e-14 84.7 59 71.2
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 3.3e-14 84.3 69 63.8
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 1.2e-13 82.4 74 54.1
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 1.6e-13 82.0 65 61.5
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 4.7e-13 80.5 122 40.2
SHI11147 Sapria himalayana HOM05D000105 ORTHO05D000023 8.1e-13 79.7 87 47.1
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.5e-11 75.5 77 42.9
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 1.3e-10 72.4 49 67.3
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 1.1e-09 69.3 54 57.4
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 3.2e-09 67.8 52 59.6
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 4.2e-09 67.4 59 55.9
CsaV3_5G013640 Cucumis sativus L. HOM05D001329 ORTHO05D004946 6.0e-08 63.5 76 44.7
Glyma.08G248800 Glycine max HOM05D001329 ORTHO05D004946 6.0e-08 63.5 48 62.5
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 1.7e-07 62.0 52 55.8
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 3.9e-07 60.8 51 51.0


User provided reference genes

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