Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 2.6e-95 352.1 176 100.0
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 6.5e-91 337.4 175 96.6
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 1.1e-87 326.6 177 93.2
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 6.3e-86 320.9 180 90.0
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 1.8e-85 319.3 176 89.8
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 3.5e-84 315.1 180 89.4
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 2.2e-83 312.4 178 88.8
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 6.5e-83 310.8 177 88.7
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 8.5e-83 310.5 177 89.3
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 1.5e-82 309.7 177 88.1
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 4.2e-82 308.1 177 88.1
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 2.7e-81 305.4 178 87.1
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 4.7e-81 304.7 177 88.7
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 3.3e-79 298.5 175 85.1
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.1e-77 293.5 175 84.0
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 4.0e-72 275.0 175 77.1
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.6e-68 263.1 175 74.9
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 2.0e-68 262.7 175 75.4
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 3.5e-68 261.9 171 74.3
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 2.9e-67 258.8 169 75.7
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 6.5e-67 257.7 176 72.2
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 8.6e-67 257.3 175 73.7
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 1.5e-66 256.5 174 73.6
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 2.5e-66 255.8 173 74.6
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 4.2e-66 255.0 175 73.1
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 5.5e-66 254.6 175 72.6
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 9.5e-66 253.8 173 73.4
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 1.6e-65 253.1 175 70.9
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 2.1e-65 252.7 173 73.4
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 2.1e-65 252.7 174 72.4
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 2.1e-65 252.7 174 72.4
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 2.8e-65 252.3 174 73.0
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 3.6e-65 251.9 174 72.4
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 3.6e-65 251.9 175 74.3
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 4.7e-65 251.5 175 73.1
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 4.7e-65 251.5 170 73.5
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 1.0e-64 250.4 169 74.0
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.0e-64 250.4 175 70.9
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.0e-64 250.4 175 72.6
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.8e-64 249.6 179 69.3
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 2.3e-64 249.2 169 74.6
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 3.0e-64 248.8 176 71.6
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 4.0e-64 248.4 175 72.0
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 6.8e-64 247.7 170 70.6
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 8.8e-64 247.3 175 70.9
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 1.2e-63 246.9 175 70.9
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 1.2e-63 246.9 174 71.3
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 1.2e-63 246.9 176 69.9
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.2e-63 246.9 169 71.0
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 1.5e-63 246.5 170 71.8
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.0e-63 246.1 175 69.7
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.0e-63 246.1 175 69.7
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 2.6e-63 245.7 168 73.8
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 2.6e-63 245.7 175 72.0
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 3.4e-63 245.4 170 72.9
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 3.4e-63 245.4 174 70.1
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 4.4e-63 245.0 179 70.4
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 4.4e-63 245.0 170 71.2
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 5.7e-63 244.6 172 72.1
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 7.5e-63 244.2 168 73.8
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 9.8e-63 243.8 170 69.4
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.3e-62 243.4 169 71.0
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 1.7e-62 243.0 179 70.4
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 2.2e-62 242.7 174 69.0
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 2.8e-62 242.3 168 74.4
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.8e-62 242.3 172 72.1
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 3.7e-62 241.9 176 67.6
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.7e-62 241.9 170 69.4
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.7e-62 241.9 170 68.8
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 3.7e-62 241.9 169 71.0
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 3.7e-62 241.9 171 70.8
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 4.9e-62 241.5 172 72.7
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 4.9e-62 241.5 174 71.3
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.3e-62 241.1 170 69.4
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 8.3e-62 240.7 165 71.5
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 8.3e-62 240.7 202 62.4
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 1.1e-61 240.4 175 66.9
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 1.4e-61 240.0 175 69.7
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 1.8e-61 239.6 175 67.4
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 1.8e-61 239.6 175 66.9
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 1.8e-61 239.6 170 68.2
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 3.1e-61 238.8 175 68.6
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 3.1e-61 238.8 169 70.4
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 4.1e-61 238.4 174 69.0
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 5.4e-61 238.0 170 69.4
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 7.0e-61 237.7 169 69.2
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 9.2e-61 237.3 175 68.6
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 9.2e-61 237.3 170 69.4
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 1.2e-60 236.9 171 69.0
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 1.2e-60 236.9 176 67.6
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 1.2e-60 236.9 176 68.2
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.2e-60 236.9 175 68.6
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 1.6e-60 236.5 168 70.8
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.6e-60 236.5 174 69.0
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.0e-60 236.1 174 67.8
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 2.0e-60 236.1 175 70.3
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.0e-60 236.1 176 67.6
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 2.7e-60 235.7 177 67.2
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 3.5e-60 235.3 168 69.6
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 5.9e-60 234.6 174 67.8
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 3.8e-59 231.9 161 70.8
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 5.0e-59 231.5 167 69.5
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 8.6e-59 230.7 174 68.4
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.9e-58 229.6 170 67.6
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.5e-58 229.2 176 66.5
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 5.6e-58 228.0 169 66.3
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 2.8e-57 225.7 172 66.9
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.7e-57 224.9 168 67.3
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 6.1e-57 224.6 188 61.2
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 8.0e-57 224.2 174 66.1
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 8.0e-57 224.2 170 67.6
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 8.9e-56 220.7 170 65.3
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 1.5e-55 219.9 177 64.4
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.4e-55 218.8 213 56.8
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 4.4e-55 218.4 173 66.5
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 8.3e-54 214.2 176 64.2
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 1.4e-53 213.4 180 65.0
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 1.8e-53 213.0 176 63.1
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 5.4e-53 211.5 160 66.2
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 5.4e-53 211.5 148 73.0
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 7.0e-53 211.1 147 70.1
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 1.2e-52 210.3 176 63.6
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 1.6e-52 209.9 148 72.3
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 2.7e-52 209.1 147 74.1
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 3.0e-51 205.7 201 57.2
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 6.6e-51 204.5 176 59.7
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 2.5e-50 202.6 169 64.5
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 3.4e-47 192.2 117 82.1
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 4.0e-40 168.7 175 52.0
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 6.8e-40 167.9 118 72.0
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 2.0e-39 166.4 172 55.8
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 9.9e-39 164.1 170 54.7
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.3e-38 163.7 114 71.1
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 1.3e-38 163.7 164 50.6
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 2.2e-38 162.9 162 51.9
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 2.2e-38 162.9 115 70.4
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 1.9e-37 159.8 165 50.9
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 9.2e-37 157.5 162 50.6
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 8.9e-32 141.0 160 50.6
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 2.0e-31 139.8 222 40.5
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 2.9e-30 136.0 101 67.3
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 1.1e-29 134.0 171 46.2
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.1e-28 129.8 157 49.7
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.1e-28 129.8 198 44.4
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 6.0e-28 128.3 86 73.3
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 1.0e-27 127.5 83 74.7
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 5.1e-27 125.2 160 43.1
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 4.3e-26 122.1 83 71.1
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 1.2e-25 120.6 87 71.3
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 1.2e-25 120.6 83 68.7
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.8e-24 116.7 89 62.9
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 5.2e-24 115.2 139 48.9
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 9.9e-23 110.9 117 54.7
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.1e-21 107.5 83 63.9
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 1.6e-20 103.6 88 59.1
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 3.9e-19 99.0 90 61.1
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 6.6e-19 98.2 75 66.7
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 4.2e-13 79.0 138 41.3
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 1.3e-09 67.4 216 29.6
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 1.3e-09 67.4 55 52.7
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 1.1e-08 64.3 42 69.0
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 2.4e-08 63.2 58 55.2
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 2.6e-07 59.7 54 55.6
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 8.4e-06 54.7 143 32.2


User provided reference genes

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