Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G33200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.0e-156 555.1 262 100.0
AT3G26010 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 3.1e-73 279.3 249 59.4
AL5G14680 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.8e-71 272.3 249 60.2
A10p18240 Brassica napus HOM05D002743 ORTHO05D002895 4.2e-70 268.9 260 54.6
BcaB08g36410 Brassica carinata HOM05D002743 ORTHO05D002895 3.6e-69 265.8 264 54.5
A10p19100 Brassica napus HOM05D002743 ORTHO05D002895 4.7e-69 265.4 258 56.2
BraA10t43899Z Brassica rapa HOM05D002743 ORTHO05D002895 1.0e-68 264.2 260 53.8
Carub.0005s0386 Capsella rubella HOM05D002743 ORTHO05D002895 1.0e-68 264.2 249 57.0
BraA10t43989Z Brassica rapa HOM05D002743 ORTHO05D002895 6.8e-68 261.5 260 56.9
BraA01t01181Z Brassica rapa HOM05D002743 ORTHO05D002895 8.8e-68 261.2 254 55.1
A01p12360 Brassica napus HOM05D002743 ORTHO05D002895 1.5e-67 260.4 248 56.0
BraA01t02518Z Brassica rapa HOM05D002743 ORTHO05D002895 1.5e-67 260.4 262 56.9
A01p25990 Brassica napus HOM05D002743 ORTHO05D002895 2.6e-67 259.6 262 56.9
BcaB08g36564 Brassica carinata HOM05D002743 ORTHO05D002895 4.8e-66 255.4 263 54.8
BcaB08g37317 Brassica carinata HOM05D002743 ORTHO05D002895 1.3e-63 247.3 259 54.8
BcaC04g19490 Brassica carinata HOM05D002743 ORTHO05D002895 2.2e-63 246.5 265 54.7
C09p55180 Brassica napus HOM05D002743 ORTHO05D002895 2.2e-63 246.5 265 54.7
A10p19880 Brassica napus HOM05D002743 ORTHO05D002895 1.1e-62 244.2 264 53.8
Thhalv10013759m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.2e-61 240.7 258 54.3
BolC1t01435H Brassica oleracea HOM05D002743 ORTHO05D002895 3.6e-61 239.2 257 51.8
A02p05860 Brassica napus HOM05D002743 ORTHO05D002895 4.0e-60 235.7 258 51.6
BraA02t05538Z Brassica rapa HOM05D002743 ORTHO05D002895 4.0e-60 235.7 258 51.6
BolC2t06988H Brassica oleracea HOM05D002743 ORTHO05D002895 8.8e-60 234.6 262 49.6
BcaNung04711 Brassica carinata HOM05D002743 ORTHO05D002895 9.1e-57 224.6 248 52.4
Carub.0007s1889 Capsella rubella HOM05D002743 ORTHO05D002895 1.6e-56 223.8 267 47.9
BcaC04g19386 Brassica carinata HOM05D002743 ORTHO05D002895 5.0e-55 218.8 262 50.0
BcaC01g00721 Brassica carinata HOM05D002743 ORTHO05D002895 9.8e-51 204.5 237 52.3
C03p83580 Brassica napus HOM05D002743 ORTHO05D002895 9.8e-51 204.5 237 52.3
BolC3t20638H Brassica oleracea HOM05D002743 ORTHO05D002895 9.8e-51 204.5 237 52.3
BcaB08g36563 Brassica carinata HOM05D002743 ORTHO05D002895 1.6e-48 197.2 259 47.5
CARHR229890 Cardamine hirsuta HOM05D002743 ORTHO05D002895 5.9e-48 195.3 261 47.1
BNapus_Darmor_BZH_scaffold_38p02040 Brassica napus HOM05D002743 ORTHO05D002895 2.9e-47 193.0 227 48.9
CARHR025250 Cardamine hirsuta HOM05D002743 ORTHO05D002895 6.6e-47 191.8 264 45.1
Thhalv10027176m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.1e-46 191.0 270 43.3
Carub.0007s1819 Capsella rubella HOM05D002743 ORTHO05D002895 9.5e-46 188.0 255 46.7
AL1G67480 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.7e-45 185.7 258 45.0
BolC9t58491H Brassica oleracea HOM05D002743 ORTHO05D002895 1.0e-44 184.5 236 45.8
AT4G22430 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.8e-44 183.7 262 43.1
C09p56260 Brassica napus HOM05D002743 ORTHO05D002895 7.5e-43 178.3 262 42.7
C01p14880 Brassica napus HOM05D002743 ORTHO05D002895 2.9e-42 176.4 247 42.5
BNapus_Darmor_BZH_scaffold_38p02050 Brassica napus HOM05D002743 ORTHO05D002895 5.0e-39 165.6 168 51.2
C09p56250 Brassica napus HOM05D002743 ORTHO05D002895 1.8e-36 157.1 232 40.9
CARHR040090 Cardamine hirsuta HOM05D002743 ORTHO05D002895 4.1e-33 146.0 279 41.2
A05p20390 Brassica napus HOM05D002743 ORTHO05D002895 1.2e-32 144.4 287 39.7
BcaC09g51280 Brassica carinata HOM05D002743 ORTHO05D002895 4.6e-32 142.5 247 38.1
Sp1g36850 Schrenkiella parvula HOM05D002743 ORTHO05D002895 1.0e-31 141.4 284 39.4
SpUn0137_0030 Schrenkiella parvula HOM05D002743 ORTHO05D002895 1.0e-31 141.4 284 39.4
Sp2g04630 Schrenkiella parvula HOM05D002743 ORTHO05D002895 5.1e-31 139.0 273 38.8
AL1G57560 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.6e-31 138.3 266 38.0
AT1G49990 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 3.3e-30 136.3 305 36.4
Thhalv10011517m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 4.3e-30 136.0 281 39.9
BcaB07g31193 Brassica carinata HOM05D002743 ORTHO05D002895 5.6e-30 135.6 278 38.1
BolC9t58494H Brassica oleracea HOM05D002743 ORTHO05D002895 7.3e-30 135.2 198 41.4
BcaB07g33451 Brassica carinata HOM05D002743 ORTHO05D002895 9.5e-30 134.8 281 40.9
BcaNung04712 Brassica carinata HOM05D002743 ORTHO05D002895 1.2e-29 134.4 118 56.8
C09p56220 Brassica napus HOM05D002609 ORTHO05D002820 1.6e-29 134.0 198 40.9
Carub.0005s1587 Capsella rubella HOM05D002743 ORTHO05D002895 1.6e-29 134.0 301 38.9
BcaC04g22203 Brassica carinata HOM05D002743 ORTHO05D002895 2.1e-29 133.7 281 37.7
A09p17800 Brassica napus HOM05D002743 ORTHO05D002895 2.1e-29 133.7 281 37.7
BraA09t37413Z Brassica rapa HOM05D002743 ORTHO05D002895 2.1e-29 133.7 281 37.7
C09p22150 Brassica napus HOM05D002743 ORTHO05D002895 4.7e-29 132.5 281 37.7
BolC9t55130H Brassica oleracea HOM05D002743 ORTHO05D002895 1.8e-28 130.6 281 37.0
BraA05t20946Z Brassica rapa HOM05D002743 ORTHO05D002895 1.8e-28 130.6 290 38.6
AL1G27780 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.1e-28 129.8 279 36.6
BcaC08g43177 Brassica carinata HOM05D002743 ORTHO05D002895 5.2e-28 129.0 280 38.2
BraA08t33514Z Brassica rapa HOM05D002743 ORTHO05D002895 5.2e-28 129.0 123 50.4
A06p03440 Brassica napus HOM05D002743 ORTHO05D002895 8.9e-28 128.3 281 38.1
C03p83640 Brassica napus HOM05D002743 ORTHO05D002895 8.9e-28 128.3 134 56.7
BraA06t23552Z Brassica rapa HOM05D002743 ORTHO05D002895 2.0e-27 127.1 278 38.5
BcaB07g33444 Brassica carinata HOM05D002743 ORTHO05D002895 2.6e-27 126.7 286 35.7
C06p04770 Brassica napus HOM05D002743 ORTHO05D002895 2.6e-27 126.7 280 37.9
AL5G16370 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.6e-27 125.2 287 35.2
AT1G15680 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 9.9e-27 124.8 283 35.0
Carub.0151s0001 Capsella rubella HOM05D002743 ORTHO05D002895 1.7e-26 124.0 298 34.9
A08p15370 Brassica napus HOM05D002743 ORTHO05D002895 3.7e-26 122.9 117 50.4
C06p04690 Brassica napus HOM05D002743 ORTHO05D002895 6.4e-26 122.1 285 34.4
BcaC08g43169 Brassica carinata HOM05D002743 ORTHO05D002895 1.4e-25 120.9 285 34.7
Carub.0004s2674 Capsella rubella HOM05D002743 ORTHO05D002895 1.9e-25 120.6 286 33.6
BcaB07g33448 Brassica carinata HOM05D002743 ORTHO05D002895 7.1e-25 118.6 280 35.7
BolC6t35599H Brassica oleracea HOM05D002743 ORTHO05D002895 7.1e-25 118.6 301 35.9
Thhalv10009727m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 9.2e-25 118.2 277 33.6
BcaB07g33449 Brassica carinata HOM05D002743 ORTHO05D002895 3.5e-24 116.3 280 36.1
BraA10t44063Z Brassica rapa HOM05D002743 ORTHO05D002895 4.6e-24 115.9 92 62.0
SpUn0003_0080 Schrenkiella parvula HOM05D002743 ORTHO05D002895 1.1e-22 111.3 236 34.7
C09p53870 Brassica napus HOM05D002743 ORTHO05D002895 5.6e-22 109.0 156 46.8
Carub.0006s2838 Capsella rubella HOM05D002743 ORTHO05D002895 7.3e-22 108.6 260 32.7
A02p35850 Brassica napus HOM05D002743 ORTHO05D002895 1.6e-21 107.5 267 33.3
AT3G23970 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 2.1e-21 107.1 288 31.6
BraA02t08585Z Brassica rapa HOM05D002743 ORTHO05D002895 2.1e-21 107.1 267 33.3
BraA02t08589Z Brassica rapa HOM05D002743 ORTHO05D002895 2.1e-21 107.1 267 33.3
AL3G39670 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.7e-21 105.9 242 36.0
Thhalv10029227m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 4.7e-21 105.9 290 31.7
THA.LOC104824016 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 4.7e-21 105.9 242 33.5
AL6G43490 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-20 104.8 291 30.6
BcaC03g17512 Brassica carinata HOM05D002743 ORTHO05D002895 3.1e-20 103.2 267 33.0
C02p54750 Brassica napus HOM05D002743 ORTHO05D002895 3.1e-20 103.2 267 33.0
BolC2t11536H Brassica oleracea HOM05D002743 ORTHO05D002895 3.1e-20 103.2 267 33.0
Thhalv10000704m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 3.1e-20 103.2 272 33.8
AL3G39540 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.0e-20 102.8 285 29.8
Carub.0005s0683 Capsella rubella HOM05D002743 ORTHO05D002895 5.2e-20 102.4 277 32.9
AL6G47130 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.9e-20 101.7 295 30.8
AT3G28223 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 2.6e-19 100.1 259 30.5
BcaC06g36618 Brassica carinata HOM05D002743 ORTHO05D002895 3.4e-19 99.8 286 31.5
BcaC06g36619 Brassica carinata HOM05D002743 ORTHO05D002895 3.4e-19 99.8 286 31.5
AL3G39550 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 9.9e-19 98.2 281 28.8
AL5G18350 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 9.9e-19 98.2 275 29.8
AT3G28330 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 9.9e-19 98.2 275 33.5
THA.LOC104823978 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 1.3e-18 97.8 206 35.0
AL8G22310 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.9e-18 96.7 277 30.0
AL34U10080 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.8e-18 96.3 278 30.2
AL8G22320 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.8e-18 96.3 278 30.6
BcaB06g26601 Brassica carinata HOM05D002743 ORTHO05D002895 4.9e-18 95.9 287 29.6
AL5G17830 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.4e-18 95.5 280 30.4
BraA07t28599Z Brassica rapa HOM05D002743 ORTHO05D002895 1.4e-17 94.4 283 28.3
BcaNung03477 Brassica carinata HOM05D002743 ORTHO05D002895 2.4e-17 93.6 126 45.2
A07p08150 Brassica napus HOM05D002743 ORTHO05D002895 2.4e-17 93.6 283 27.9
AL6G48160 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.2e-17 93.2 266 29.7
AL6G48200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.2e-17 92.8 273 30.4
THA.LOC104805970 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 4.2e-17 92.8 292 30.8
BolC9t58379H Brassica oleracea HOM05D002743 ORTHO05D002895 5.4e-17 92.4 144 45.8
AL5G17810 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.2e-16 91.3 277 30.3
BolC2t06987H Brassica oleracea HOM05D002743 ORTHO05D002895 1.2e-16 91.3 93 51.6
C03p83600 Brassica napus HOM05D002743 ORTHO05D002895 2.7e-16 90.1 86 55.8
AT3G48220 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 3.5e-16 89.7 196 35.7
Aa31LG9G5850 Aethionema arabicum HOM05D002743 ORTHO05D002895 7.8e-16 88.6 248 29.0
AL3G39690 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.7e-15 87.4 192 37.0
A09p04310 Brassica napus HOM05D002743 ORTHO05D002895 1.7e-15 87.4 279 29.0
Aa31sc58G40 Aethionema arabicum HOM05D002743 ORTHO05D002895 2.3e-15 87.0 297 26.9
BraA09t36068Z Brassica rapa HOM05D002743 ORTHO05D002895 2.3e-15 87.0 279 29.0
BcaNung04713 Brassica carinata HOM05D002743 ORTHO05D002895 1.1e-14 84.7 85 54.1
Carub.0005s0673 Capsella rubella HOM05D002743 ORTHO05D002895 1.5e-14 84.3 272 28.3
Thhalv10001535m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.5e-14 84.3 251 30.7
Thhalv10023522m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.9e-14 84.0 227 30.4
AL4G45790 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 5.6e-14 82.4 215 31.6
BcaC04g23794 Brassica carinata HOM05D002743 ORTHO05D002895 9.6e-14 81.6 277 29.6
A02p35860 Brassica napus HOM05D002743 ORTHO05D002895 1.3e-13 81.3 176 35.2
C04p44830 Brassica napus HOM05D002743 ORTHO05D002895 1.3e-13 81.3 281 29.5
CARHR100270 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.3e-13 81.3 268 27.2
BcaC02g09624 Brassica carinata HOM05D002743 ORTHO05D002895 2.8e-13 80.1 279 29.4
C09p04610 Brassica napus HOM05D002743 ORTHO05D002895 2.8e-13 80.1 277 29.2
BolC4t26061H Brassica oleracea HOM05D002743 ORTHO05D002895 2.8e-13 80.1 279 29.4
BolC9t53389H Brassica oleracea HOM05D002743 ORTHO05D002895 2.8e-13 80.1 277 29.2
BolC9t53387H Brassica oleracea HOM05D002743 ORTHO05D002895 3.6e-13 79.7 256 28.9
C07p11650 Brassica napus HOM05D002743 ORTHO05D002895 8.1e-13 78.6 290 29.3
C09p04580 Brassica napus HOM05D002743 ORTHO05D002895 8.1e-13 78.6 253 28.5
CARHR147000 Cardamine hirsuta HOM05D002743 ORTHO05D002895 8.1e-13 78.6 74 59.5
A04p11100 Brassica napus HOM05D002743 ORTHO05D002895 1.1e-12 78.2 281 28.5
Aa31sc58G10 Aethionema arabicum HOM05D002743 ORTHO05D002895 1.8e-12 77.4 290 26.6
Sp5g25320 Schrenkiella parvula HOM05D002743 ORTHO05D002895 2.4e-12 77.0 219 30.6
Carub.0004s1288 Capsella rubella HOM05D002743 ORTHO05D002895 3.1e-12 76.6 223 27.4
CARHR131260 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.1e-12 76.6 223 29.1
CARHR286050 Cardamine hirsuta HOM05D002743 ORTHO05D002895 4.0e-12 76.3 241 33.2
BolC9t58495H Brassica oleracea HOM05D002743 ORTHO05D002895 6.9e-12 75.5 115 45.2
BraA04t16772Z Brassica rapa HOM05D002743 ORTHO05D002895 6.9e-12 75.5 281 28.8
Carub.0008s0568 Capsella rubella HOM05D002743 ORTHO05D002895 1.2e-11 74.7 276 28.6
AT3G28280 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 2.0e-11 73.9 248 29.8
A03p54310 Brassica napus HOM05D002743 ORTHO05D002895 4.4e-11 72.8 257 30.7
Carub.0006s3136 Capsella rubella HOM05D002743 ORTHO05D002895 5.8e-11 72.4 211 28.9
CARHR229330 Cardamine hirsuta HOM05D002743 ORTHO05D002895 5.8e-11 72.4 82 48.8
AL5G17850 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.7e-10 70.9 161 36.0
Thhalv10024137m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.2e-10 70.5 201 30.8
AL6G43580 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.9e-10 70.1 214 29.4
BolC4t26059H Brassica oleracea HOM05D002743 ORTHO05D002895 2.9e-10 70.1 230 30.9
C06p04730 Brassica napus HOM05D002743 ORTHO05D002895 3.2e-09 66.6 111 40.5
BcaC08g43174 Brassica carinata HOM05D002743 ORTHO05D002895 7.1e-09 65.5 148 36.5
Thhalv10009395m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 7.1e-09 65.5 211 29.9
BcaC08g43170 Brassica carinata HOM05D002743 ORTHO05D002895 1.6e-08 64.3 148 33.8
BolC6t35602H Brassica oleracea HOM05D002743 ORTHO05D002895 2.1e-08 63.9 111 41.4
CARHR286570 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.5e-08 63.2 197 28.9
PSO161G0051 Papaver somniferum HOM05D008326 ORTHO05D001155 4.6e-08 62.8 203 28.6
C07p02110 Brassica napus HOM05D002743 ORTHO05D002895 7.8e-08 62.0 264 26.5
CARHR292690 Cardamine hirsuta HOM05D002743 ORTHO05D002895 7.8e-08 62.0 154 29.9
AL133U10030 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.9e-07 59.7 157 34.4
BcaC02g09623 Brassica carinata HOM05D002743 ORTHO05D002895 5.1e-07 59.3 167 31.7
Thhalv10022100m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 8.7e-07 58.5 206 29.6
MD13G1177900 Malus domestica HOM05D000007 ORTHO05D000521 8.7e-07 58.5 151 29.1
Lsat_1_v5_gn_4_180620 Lactuca sativa HOM05D008898 ORTHO05D001155 1.1e-06 58.2 147 29.9
Thhalv10028185m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.5e-06 57.8 162 32.7
CARHR158010 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.3e-06 56.6 140 34.3
Gohir.A09G096401 Gossypium hirsutum HOM05D001729 ORTHO05D001155 4.3e-06 56.2 144 26.4
CARHR286590 Cardamine hirsuta HOM05D002743 ORTHO05D002895 5.6e-06 55.8 128 32.0


User provided reference genes

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