Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G17500 Arabidopsis lyrata HOM05D007407 ORTHO05D009298 3.7e-70 268.1 133 100.0
Thhalv10026553m.g Eutrema salsugineum HOM05D007407 ORTHO05D009298 8.4e-67 256.9 133 96.2
AT4G33925 Arabidopsis thaliana HOM05D007407 ORTHO05D009298 1.4e-66 256.1 133 95.5
CARHR242020 Cardamine hirsuta HOM05D007407 ORTHO05D009298 1.4e-66 256.1 133 94.7
Carub.0007s0650 Capsella rubella HOM05D007407 ORTHO05D009298 4.2e-66 254.6 133 95.5
Sp7g31660 Schrenkiella parvula HOM05D007407 ORTHO05D009298 5.5e-66 254.2 133 94.7
BraA01t00434Z Brassica rapa HOM05D007407 ORTHO05D009298 3.5e-65 251.5 133 93.2
Aa31sc211G10 Aethionema arabicum HOM05D007407 ORTHO05D009298 4.1e-61 238.0 133 88.7
C01p04860 Brassica napus HOM05D007407 ORTHO05D009298 6.5e-59 230.7 137 86.1
BolC1t00470H Brassica oleracea HOM05D007407 ORTHO05D009298 5.9e-52 207.6 106 94.3
Cc02_g19580 Coffea canephora HOM05D007407 ORTHO05D009298 7.2e-50 200.7 133 70.7
Potri.009G091800 Populus trichocarpa HOM05D007407 ORTHO05D009298 9.4e-50 200.3 133 70.7
MSTRG.27752 Avicennia marina HOM05D007407 ORTHO05D009298 2.1e-49 199.1 133 70.7
AUR62008735 Chenopodium quinoa HOM05D007407 ORTHO05D009298 2.7e-49 198.7 133 70.7
Peaxi162Scf00152g00338 Petunia axillaris HOM05D007407 ORTHO05D009298 3.6e-49 198.4 133 70.7
HanXRQChr16g0509111 Helianthus annuus HOM05D007407 ORTHO05D009298 7.9e-49 197.2 131 70.2
Oeu044262.1 Olea europaea HOM05D007407 ORTHO05D009298 1.0e-48 196.8 133 69.9
Sabra09G0070800 Salix brachista HOM05D007407 ORTHO05D009298 1.0e-48 196.8 133 69.2
SalBow3G4546 Salvia bowleyana HOM05D007407 ORTHO05D009298 1.0e-48 196.8 133 70.7
TAR628G1347 Trochodendron aralioides HOM05D007407 ORTHO05D009298 1.8e-48 196.1 133 69.9
Thecc.02G113100 Theobroma cacao HOM05D007407 ORTHO05D009298 2.3e-48 195.7 133 69.9
CAN.G13.9 Capsicum annuum HOM05D007407 ORTHO05D009298 3.0e-48 195.3 133 69.9
Ciclev10029563m.g Citrus clementina HOM05D007407 ORTHO05D009298 3.9e-48 194.9 133 68.4
RcHm_v2.0_Chr6g0254151 Rosa chinensis HOM05D007407 ORTHO05D009298 5.1e-48 194.5 133 70.7
MD10G1101800 Malus domestica HOM05D007407 ORTHO05D009298 6.7e-48 194.1 128 71.9
EL10Ac6g13315 Beta vulgaris HOM05D007407 ORTHO05D009298 8.8e-48 193.7 133 67.7
CANSAT25G3533 Cannabis sativa HOM05D007407 ORTHO05D009298 8.8e-48 193.7 133 68.4
CiPaw.05G014900 Carya illinoinensis HOM05D007407 ORTHO05D009298 8.8e-48 193.7 133 67.7
CsaV3_4G000500 Cucumis sativus L. HOM05D007407 ORTHO05D009298 1.5e-47 193.0 133 67.7
FvH4_2g04570 Fragaria vesca HOM05D007407 ORTHO05D009298 1.5e-47 193.0 133 69.9
Hma1.2p1_1023F.1_g248940 Hydrangea macrophylla HOM05D007407 ORTHO05D009298 1.5e-47 193.0 131 68.7
Sc18g0003630 Simmondsia chinensis HOM05D007407 ORTHO05D009298 2.6e-47 192.2 133 67.7
Sopen11g019840 Solanum pennellii HOM05D007407 ORTHO05D009298 2.6e-47 192.2 133 69.2
Duzib052G0893 Durio zibethinus HOM05D007407 ORTHO05D009298 3.3e-47 191.8 133 68.4
THA.LOC104807229 Tarenaya hassleriana HOM05D007407 ORTHO05D009298 4.4e-47 191.4 106 86.8
Aqoxy6G02771 Aquilegia oxysepala HOM05D007407 ORTHO05D009298 7.4e-47 190.7 133 66.9
CANSAT25G2132 Cannabis sativa HOM05D007407 ORTHO05D009298 7.4e-47 190.7 133 67.7
QL11p032060 Quercus lobata HOM05D007407 ORTHO05D009298 7.4e-47 190.7 132 68.2
FAN27G0322 Fragaria x ananassa HOM05D007407 ORTHO05D009298 9.7e-47 190.3 133 69.9
RhsimUnG0126400 Rhododendron simsii HOM05D007407 ORTHO05D009298 9.7e-47 190.3 132 68.2
FAN15G3071 Fragaria x ananassa HOM05D007407 ORTHO05D009298 1.3e-46 189.9 133 69.9
Actinidia34378 Actinidia chinensis HOM05D007407 ORTHO05D009298 2.8e-46 188.7 128 69.5
ClCG10G010580 Citrullus lanatus HOM05D007407 ORTHO05D009298 2.8e-46 188.7 133 66.2
Cpa.g.c35560 Carica papaya HOM05D007407 ORTHO05D009298 3.7e-46 188.3 140 67.1
Gohir.A03G184200 Gossypium hirsutum HOM05D007407 ORTHO05D009298 4.8e-46 188.0 133 67.7
Gohir.D02G205700 Gossypium hirsutum HOM05D007407 ORTHO05D009298 4.8e-46 188.0 133 67.7
Gorai.005G233100 Gossypium raimondii HOM05D007407 ORTHO05D009298 4.8e-46 188.0 133 67.7
Migut.I00274 Erythranthe guttata HOM05D007407 ORTHO05D009298 8.2e-46 187.2 133 67.7
Atru.chr5.2418 Acer truncatum HOM05D007407 ORTHO05D009298 1.1e-45 186.8 133 66.9
Nn1g04637 Nelumbo nucifera HOM05D007407 ORTHO05D009298 1.1e-45 186.8 133 67.7
Phvul.005G003200 Phaseolus vulgaris HOM05D007407 ORTHO05D009298 1.1e-45 186.8 133 65.4
GSVIVG01037877001 Vitis vinifera HOM05D007407 ORTHO05D009298 1.4e-45 186.4 133 66.2
Psat5g233480 Pisum sativum HOM05D007407 ORTHO05D009298 2.4e-45 185.7 133 66.9
TPR.G5138 Trifolium pratense HOM05D007407 ORTHO05D009298 2.4e-45 185.7 133 66.2
Lj3g0017118 Lotus japonicus HOM05D007407 ORTHO05D009298 4.1e-45 184.9 133 63.9
Sed0024111 Sechium edule HOM05D007407 ORTHO05D009298 7.0e-45 184.1 133 64.7
Glyma.04G111400 Glycine max HOM05D007407 ORTHO05D009298 3.5e-44 181.8 133 64.7
TWI59G1341 Tripterygium wilfordii HOM05D007407 ORTHO05D009298 1.0e-43 180.3 139 65.5
Dinv42215 Davidia involucrata HOM05D007407 ORTHO05D009298 8.5e-43 177.2 134 64.9
Eucgr.I01082 Eucalyptus grandis HOM05D007407 ORTHO05D009298 8.5e-43 177.2 116 71.6
Medtr0393s0040 Medicago truncatula HOM05D007407 ORTHO05D009298 3.2e-42 175.3 128 63.3
Medtr3g010320 Medicago truncatula HOM05D007407 ORTHO05D009298 4.2e-42 174.9 133 65.4
Nitab4.5_0000088g0130 Nicotiana tabacum HOM05D007407 ORTHO05D009298 7.2e-42 174.1 118 67.8
Lsat_1_v5_gn_7_86121 Lactuca sativa HOM05D007407 ORTHO05D009298 3.6e-41 171.8 113 69.9
Manes.07G063400 Manihot esculenta HOM05D007407 ORTHO05D009298 3.6e-41 171.8 181 50.8
arahy.Tifrunner.gnm1.ann1.2Y2YM1 Arachis hypogaea HOM05D007407 ORTHO05D009298 1.4e-40 169.9 133 60.9
arahy.Tifrunner.gnm1.ann1.D6X9Y4 Arachis hypogaea HOM05D007407 ORTHO05D009298 1.4e-40 169.9 133 60.9
DCAR_001669 Daucus carota HOM05D007407 ORTHO05D009298 1.8e-40 169.5 133 60.2
Rhsim11G0155200 Rhododendron simsii HOM05D007407 ORTHO05D009298 1.1e-39 166.8 113 69.0
Glyma.06G322800 Glycine max HOM05D007407 ORTHO05D009298 9.7e-39 163.7 114 64.9
Zm00001eb326460 Zea mays HOM05D007407 ORTHO05D009298 9.7e-39 163.7 128 58.6
Lalb_Chr18g0048491 Lupinus albus HOM05D007407 ORTHO05D009298 4.8e-38 161.4 133 55.6
SGA_v2.0_scaffold13G06621 Striga asiatica HOM05D007407 ORTHO05D009298 4.8e-38 161.4 176 49.4
VMungo1080G0753 Vigna mungo HOM05D007407 ORTHO05D009298 2.4e-37 159.1 107 67.3
Hund12642 Selenicereus undatus HOM05D007407 ORTHO05D009298 2.0e-36 156.0 117 62.4
vmacro01981 Vaccinium macrocarpon HOM05D007407 ORTHO05D009298 7.7e-36 154.1 128 60.2
Nitab4.5_0000700g0060 Nicotiana tabacum HOM05D007407 ORTHO05D009298 2.9e-35 152.1 105 66.7
ECA236G1324 Erigeron canadensis HOM05D007407 ORTHO05D009298 3.8e-35 151.8 98 71.4
Duzib132G0979 Durio zibethinus HOM05D007407 ORTHO05D009298 1.9e-34 149.4 128 57.8
Solyc11g044330.3 Solanum lycopersicum HOM05D007407 ORTHO05D009298 9.4e-34 147.1 96 70.8
HPP92_010144 Vanilla planifolia HOM05D007407 ORTHO05D009298 3.6e-33 145.2 132 50.8
PGSC0003DMG400023130 Solanum tuberosum HOM05D007407 ORTHO05D009298 1.0e-32 143.7 92 71.7
SEGI_09286 Sequoiadendron giganteum HOM05D007407 ORTHO05D009298 1.4e-32 143.3 121 52.1
SHI05205 Sapria himalayana HOM05D007407 ORTHO05D009298 4.0e-32 141.7 103 65.0
MD05G1094600 Malus domestica HOM05D007407 ORTHO05D009298 2.6e-31 139.0 96 66.7
Pp3c22_18210 Physcomitrium patens HOM05D007407 ORTHO05D009298 4.8e-30 134.8 122 54.1
Prupe.8G139500 Prunus persica HOM05D007407 ORTHO05D009298 2.5e-26 122.5 133 53.4
Mapoly0083s0061 Marchantia polymorpha HOM05D007407 ORTHO05D009298 4.2e-26 121.7 110 47.3
Hma1.2p1_1023F.1_g248930 Hydrangea macrophylla HOM05D007407 ORTHO05D009298 2.7e-25 119.0 133 51.9
CBR_g6331 Chara braunii HOM05D007407 ORTHO05D009298 2.0e-23 112.8 118 46.6
AagrBONN_evm.TU.Sc2ySwM_228.2221 Anthoceros agrestis HOM05D007407 ORTHO05D009298 1.7e-22 109.8 111 45.9
Manes.07G065401 Manihot esculenta HOM05D007407 ORTHO05D009298 5.4e-21 104.8 70 68.6
MCO15G608 Micromonas commoda HOM05D007407 ORTHO05D009298 1.2e-20 103.6 132 40.9
SMO330G0043 Selaginella moellendorffii HOM05D007407 ORTHO05D009298 7.7e-20 100.9 102 49.0
Cre16.g668000 Chlamydomonas reinhardtii HOM05D007407 ORTHO05D009298 3.8e-19 98.6 109 47.7
MD00G1205200 Malus domestica HOM05D007407 ORTHO05D009298 1.0e-16 90.5 59 74.6
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 7.5e-15 84.3 67 62.7
CBR_g37936 Chara braunii HOM05D019869 ORTHO05D028728 4.1e-13 78.6 83 43.4
unitig_747.g21223 Utricularia gibba HOM05D007407 ORTHO05D009298 1.1e-10 70.5 47 59.6
Medtr8g072380 Medicago truncatula HOM05D007407 ORTHO05D009298 2.6e-07 59.3 68 41.2
unitig_747.g21224 Utricularia gibba HOM05D007407 ORTHO05D009298 7.5e-07 57.8 37 67.6
Medtr2g093710 Medicago truncatula HOM05D007407 ORTHO05D009298 9.8e-07 57.4 103 35.9
COL.COLO4_30985 Corchorus olitorius HOM05D001363 ORTHO05D006255 4.9e-06 55.1 55 54.5


User provided reference genes

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