Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 2.4e-167 592.0 291 100.0
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 6.8e-162 573.9 291 96.2
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 6.0e-158 560.8 291 94.8
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 1.4e-151 539.7 291 92.1
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 7.1e-151 537.3 291 90.7
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 3.5e-150 535.0 291 89.7
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 4.6e-150 534.6 291 89.7
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 3.9e-149 531.6 291 89.7
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 3.3e-148 528.5 291 89.3
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 9.0e-146 520.4 307 85.0
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 2.6e-145 518.8 292 88.7
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 4.6e-142 508.1 291 85.9
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.9e-135 486.1 290 81.7
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 3.2e-135 485.3 291 80.4
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 2.4e-122 442.6 287 73.9
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 3.1e-122 442.2 287 73.9
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 7.6e-121 437.6 289 72.7
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 8.4e-120 434.1 292 71.6
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 8.4e-120 434.1 292 71.6
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 2.5e-119 432.6 286 72.4
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 1.6e-118 429.9 286 72.0
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 6.0e-118 427.9 287 70.4
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 6.0e-118 427.9 287 70.4
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 7.9e-118 427.6 287 71.1
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.3e-117 426.8 286 70.6
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 1.8e-117 426.4 287 71.1
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 3.0e-117 425.6 287 71.4
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 3.9e-117 425.2 287 69.0
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 5.1e-117 424.9 286 71.7
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.9e-116 422.9 286 71.7
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 4.3e-116 421.8 292 71.2
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 7.4e-116 421.0 288 69.1
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.3e-115 420.2 288 69.8
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 2.2e-115 419.5 287 71.1
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 2.8e-115 419.1 289 71.3
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 2.8e-115 419.1 286 70.3
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 2.8e-115 419.1 286 70.6
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 3.7e-115 418.7 287 70.7
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 4.8e-115 418.3 287 70.7
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 4.8e-115 418.3 286 70.6
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 8.2e-115 417.5 285 71.6
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 8.2e-115 417.5 291 69.1
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.1e-114 417.2 287 69.7
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 1.8e-114 416.4 288 70.5
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 4.1e-114 415.2 287 70.0
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 5.3e-114 414.8 284 68.7
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 6.9e-114 414.5 285 70.5
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 6.9e-114 414.5 287 70.7
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 9.0e-114 414.1 287 69.7
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 9.0e-114 414.1 286 69.2
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.5e-113 413.3 283 71.4
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 2.0e-113 412.9 286 69.2
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.4e-113 412.1 287 68.3
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.4e-113 412.1 287 68.3
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 4.5e-113 411.8 286 69.6
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 4.5e-113 411.8 291 70.8
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 7.7e-113 411.0 286 67.8
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.3e-112 410.2 287 69.0
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 1.3e-112 410.2 290 69.0
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 2.9e-112 409.1 287 67.6
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 2.9e-112 409.1 287 66.9
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 3.8e-112 408.7 324 63.6
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 5.0e-112 408.3 287 67.9
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 6.5e-112 407.9 291 66.7
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 6.5e-112 407.9 286 67.8
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 6.5e-112 407.9 302 65.2
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 6.5e-112 407.9 287 68.3
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 6.5e-112 407.9 288 67.7
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 1.4e-111 406.8 285 68.1
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 2.5e-111 406.0 291 67.4
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 4.2e-111 405.2 301 65.4
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 5.5e-111 404.8 286 67.8
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 7.2e-111 404.4 287 68.3
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 7.2e-111 404.4 287 68.3
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 7.2e-111 404.4 286 68.9
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.6e-110 403.3 286 66.1
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 3.6e-110 402.1 286 66.4
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 6.1e-110 401.4 287 67.9
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 7.9e-110 401.0 291 67.4
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.3e-109 399.4 277 67.9
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 2.3e-109 399.4 324 61.1
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 3.0e-109 399.1 287 66.9
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 4.3e-108 395.2 284 67.6
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 4.3e-108 395.2 286 66.4
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 5.7e-108 394.8 287 67.2
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.4e-106 389.4 287 65.9
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 3.1e-106 389.0 295 64.4
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 4.1e-106 388.7 254 73.6
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 4.5e-105 385.2 286 66.8
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.7e-104 383.3 254 72.4
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 1.7e-104 383.3 240 75.0
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 3.2e-103 379.0 254 72.4
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 5.5e-103 378.3 301 62.5
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 1.6e-102 376.7 255 71.8
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 5.1e-101 371.7 285 64.2
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 5.1e-101 371.7 287 63.4
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 2.6e-100 369.4 286 63.6
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 4.8e-99 365.2 324 58.0
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 4.8e-99 365.2 324 58.0
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 4.8e-99 365.2 254 67.7
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 2.0e-97 359.8 255 67.5
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 1.3e-96 357.1 282 62.1
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 5.0e-96 355.1 286 61.2
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 1.1e-95 354.0 290 61.4
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 1.1e-95 354.0 280 60.7
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.2e-95 352.4 286 61.5
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 4.2e-95 352.1 278 64.4
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 1.6e-94 350.1 279 60.9
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.4e-93 347.1 228 71.9
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 8.2e-91 337.8 241 67.6
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 2.0e-89 333.2 295 57.6
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 3.5e-89 332.4 285 59.6
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 1.5e-87 327.0 264 60.2
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 2.3e-85 319.7 303 60.1
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 6.7e-85 318.2 208 74.0
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 4.4e-84 315.5 282 55.7
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 1.2e-81 307.4 288 52.1
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.1e-79 300.8 285 53.3
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 2.1e-78 296.6 284 53.2
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 8.0e-78 294.7 237 61.6
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 7.2e-71 271.6 228 62.3
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 1.6e-65 253.8 182 67.0
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 1.1e-63 247.7 169 67.5
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 6.0e-49 198.7 150 70.0
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 1.1e-47 194.5 263 42.2
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 9.5e-47 191.4 153 66.7
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 2.1e-46 190.3 150 68.0
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 8.9e-45 184.9 130 66.2
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 8.3e-43 178.3 272 37.9
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 3.2e-42 176.4 138 68.1
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.1e-37 159.8 152 57.2
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 8.9e-37 158.3 98 81.6
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 6.0e-33 145.6 113 58.4
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 5.1e-32 142.5 272 32.7
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 2.2e-27 127.1 379 28.2
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 4.3e-23 112.8 82 64.6
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.6e-22 110.9 101 52.5
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 2.1e-22 110.5 169 37.9
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 4.8e-22 109.4 74 67.6
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 3.8e-19 99.8 88 60.2
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 7.1e-18 95.5 92 53.3
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 2.7e-17 93.6 92 53.3
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 1.5e-15 87.8 88 54.5
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 1.5e-15 87.8 88 54.5
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 1.5e-15 87.8 61 62.3
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 1.6e-14 84.3 109 45.0
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 3.7e-14 83.2 71 56.3
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 3.7e-14 83.2 193 30.1
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 4.8e-14 82.8 68 58.8
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 9.0e-13 78.6 60 61.7
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 2.5e-10 70.5 140 34.3
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.5e-10 70.5 45 68.9
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 4.2e-10 69.7 93 47.3
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 4.2e-10 69.7 45 68.9
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 4.2e-10 69.7 45 68.9
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.2e-09 68.2 56 58.9
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.1e-09 67.4 45 64.4
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 6.7e-08 62.4 122 36.9


User provided reference genes

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