Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G12534 Arabidopsis lyrata HOM05D006387 ORTHO05D008533 4.8e-129 464.5 240 100.0
Carub.0007s0212 Capsella rubella HOM05D006387 ORTHO05D008533 1.1e-112 410.2 240 89.6
Thhalv10026114m.g Eutrema salsugineum HOM05D006387 ORTHO05D008533 1.7e-105 386.3 240 84.2
A04p09020 Brassica napus HOM05D006387 ORTHO05D008533 1.7e-102 376.3 238 82.8
BraA04t16597Z Brassica rapa HOM05D006387 ORTHO05D008533 1.7e-102 376.3 238 82.8
BcaC02g09451 Brassica carinata HOM05D006387 ORTHO05D008533 1.5e-101 373.2 238 82.4
C04p42900 Brassica napus HOM05D006387 ORTHO05D008533 4.2e-101 371.7 238 81.9
BolC4t25859H Brassica oleracea HOM05D006387 ORTHO05D008533 5.5e-101 371.3 238 81.9
BcaNung03133 Brassica carinata HOM05D006387 ORTHO05D008533 1.6e-100 369.8 240 80.0
Sp7g10120 Schrenkiella parvula HOM05D006387 ORTHO05D008533 2.1e-100 369.4 239 82.0
Aa31LG6G15050 Aethionema arabicum HOM05D006387 ORTHO05D008533 1.8e-99 366.3 246 80.5
THA.LOC104804173 Tarenaya hassleriana HOM05D006387 ORTHO05D008533 3.0e-91 339.0 200 84.5
Gorai.007G233200 Gossypium raimondii HOM05D006387 ORTHO05D008533 8.6e-86 320.9 217 76.0
Thecc.01G091900 Theobroma cacao HOM05D006387 ORTHO05D008533 3.3e-85 318.9 217 75.1
CsaV3_6G045090 Cucumis sativus L. HOM05D006387 ORTHO05D008533 6.2e-84 314.7 208 75.5
QL06p047416 Quercus lobata HOM05D006387 ORTHO05D008533 6.2e-84 314.7 230 71.3
QL93p1865_0022 Quercus lobata HOM05D006387 ORTHO05D008533 6.2e-84 314.7 230 71.3
MELO3C007722.2 Cucumis melo HOM05D006387 ORTHO05D008533 1.0e-83 313.9 228 71.1
MD15G1314800 Malus domestica HOM05D006387 ORTHO05D008533 2.3e-83 312.8 197 77.7
Gohir.D11G217100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 8.9e-83 310.8 227 71.4
CiPaw.01G046800 Carya illinoinensis HOM05D006387 ORTHO05D008533 1.2e-82 310.5 221 70.6
Dinv13619 Davidia involucrata HOM05D006387 ORTHO05D008533 1.2e-82 310.5 219 71.7
Atru.chr3.1288 Acer truncatum HOM05D006387 ORTHO05D008533 1.5e-82 310.1 214 74.3
Lju188A1T76 Lonicera japonica HOM05D006387 ORTHO05D008533 2.6e-82 309.3 200 75.0
Glyma.18G146100 Glycine max HOM05D006387 ORTHO05D008533 3.4e-82 308.9 218 71.6
Lj4A270T42 Lonicera japonica HOM05D006387 ORTHO05D008533 3.4e-82 308.9 200 75.0
Prupe.6G197200 Prunus persica HOM05D006387 ORTHO05D008533 4.4e-82 308.5 218 72.0
TWI53G0307 Tripterygium wilfordii HOM05D006387 ORTHO05D008533 4.4e-82 308.5 218 70.6
Ca_22597_v3 Cicer arietinum L. HOM05D006387 ORTHO05D008533 9.8e-82 307.4 215 72.1
Cfa004350 Carpinus fangiana HOM05D006387 ORTHO05D008533 1.7e-81 306.6 217 72.4
Manes.12G127300 Manihot esculenta HOM05D006387 ORTHO05D008533 1.7e-81 306.6 208 75.5
Sed0018819 Sechium edule HOM05D006387 ORTHO05D008533 1.7e-81 306.6 197 77.7
Ciclev10026362m.g Citrus clementina HOM05D006387 ORTHO05D008533 2.2e-81 306.2 208 73.6
RcHm_v2.0_Chr2g0111431 Rosa chinensis HOM05D006387 ORTHO05D008533 2.2e-81 306.2 219 71.7
Gohir.A11G206500 Gossypium hirsutum HOM05D006387 ORTHO05D008533 3.7e-81 305.4 227 70.0
Nitab4.5_0001468g0050 Nicotiana tabacum HOM05D006387 ORTHO05D008533 6.4e-81 304.7 204 74.5
Cpa.g.sc55.48 Carica papaya HOM05D006387 ORTHO05D008533 1.1e-80 303.9 206 74.3
FAN26G1841 Fragaria x ananassa HOM05D006387 ORTHO05D008533 1.1e-80 303.9 221 70.1
Solyc11g010510.2 Solanum lycopersicum HOM05D006387 ORTHO05D008533 1.4e-80 303.5 208 73.1
arahy.Tifrunner.gnm1.ann1.ZYRR1K Arachis hypogaea HOM05D006387 ORTHO05D008533 1.9e-80 303.1 208 74.0
arahy.Tifrunner.gnm1.ann1.K640S8 Arachis hypogaea HOM05D006387 ORTHO05D008533 2.4e-80 302.8 206 74.8
Lj4g0015074 Lotus japonicus HOM05D006387 ORTHO05D008533 2.4e-80 302.8 213 72.8
SalBow5G0849 Salvia bowleyana HOM05D006387 ORTHO05D008533 2.4e-80 302.8 215 70.7
FvH4_1g19820 Fragaria vesca HOM05D006387 ORTHO05D008533 3.2e-80 302.4 197 76.1
TPR.G14610 Trifolium pratense HOM05D006387 ORTHO05D008533 3.2e-80 302.4 208 73.1
PGSC0003DMG400016205 Solanum tuberosum HOM05D006387 ORTHO05D008533 5.4e-80 301.6 208 72.1
Peaxi162Scf00447g00119 Petunia axillaris HOM05D006387 ORTHO05D008533 9.2e-80 300.8 221 70.1
Potri.007G010400 Populus trichocarpa HOM05D006387 ORTHO05D008533 9.2e-80 300.8 216 70.4
PGR102G1540 Punica granatum HOM05D006387 ORTHO05D008533 1.2e-79 300.4 213 70.4
EL10Ac6g15218 Beta vulgaris HOM05D006387 ORTHO05D008533 1.6e-79 300.1 233 67.0
Lalb_Chr05g0228491 Lupinus albus HOM05D006387 ORTHO05D008533 2.0e-79 299.7 212 71.2
Sc16g0000480 Simmondsia chinensis HOM05D006387 ORTHO05D008533 2.0e-79 299.7 208 71.6
Sopen11g005290 Solanum pennellii HOM05D006387 ORTHO05D008533 2.0e-79 299.7 204 74.0
Nitab4.5_0010196g0030 Nicotiana tabacum HOM05D006387 ORTHO05D008533 2.7e-79 299.3 227 67.4
MSTRG.15694 Avicennia marina HOM05D006387 ORTHO05D008533 3.5e-79 298.9 220 68.2
Medtr8g068855 Medicago truncatula HOM05D006387 ORTHO05D008533 3.5e-79 298.9 203 73.4
Sabra07G0007900 Salix brachista HOM05D006387 ORTHO05D008533 6.0e-79 298.1 208 72.1
PSO541G2357 Papaver somniferum HOM05D006387 ORTHO05D008533 1.0e-78 297.4 214 69.2
Hund16539 Selenicereus undatus HOM05D006387 ORTHO05D008533 1.3e-78 297.0 228 67.1
vmacro18567 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 1.7e-78 296.6 199 72.9
CAN.G1388.12 Capsicum annuum HOM05D006387 ORTHO05D008533 2.3e-78 296.2 218 68.3
Eucgr.H04725 Eucalyptus grandis HOM05D006387 ORTHO05D008533 2.3e-78 296.2 200 73.5
AUR62003651 Chenopodium quinoa HOM05D006387 ORTHO05D008533 3.9e-78 295.4 237 65.4
Cc07_g14250 Coffea canephora HOM05D006387 ORTHO05D008533 3.9e-78 295.4 211 69.7
Phvul.003G289400 Phaseolus vulgaris HOM05D006387 ORTHO05D008533 8.6e-78 294.3 213 70.0
Psat4g119200 Pisum sativum HOM05D006387 ORTHO05D008533 1.1e-77 293.9 216 69.4
Migut.K00786 Erythranthe guttata HOM05D006387 ORTHO05D008533 1.5e-77 293.5 197 71.6
MBI06_g39563_MAGBIO Magnolia biondii HOM05D006387 ORTHO05D008533 2.5e-77 292.7 228 66.7
AUR62017959 Chenopodium quinoa HOM05D006387 ORTHO05D008533 3.3e-77 292.4 227 67.0
Rhsim08G0015000 Rhododendron simsii HOM05D006387 ORTHO05D008533 4.3e-77 292.0 199 71.9
Haze_15057 Corylus avellana HOM05D000344 ORTHO05D000934 7.3e-77 291.2 188 77.1
ECA238G0943 Erigeron canadensis HOM05D006387 ORTHO05D008533 9.5e-77 290.8 199 73.4
FAN19G3199 Fragaria x ananassa HOM05D006387 ORTHO05D008533 1.6e-76 290.0 193 74.6
Nn5g29908 Nelumbo nucifera HOM05D006387 ORTHO05D008533 4.7e-76 288.5 224 65.2
HanXRQChr14g0442661 Helianthus annuus HOM05D006387 ORTHO05D008533 1.8e-75 286.6 204 69.1
Duzib187G0618 Durio zibethinus HOM05D006387 ORTHO05D008533 2.3e-75 286.2 215 67.9
ClCG01G018420 Citrullus lanatus HOM05D006387 ORTHO05D008533 8.9e-75 284.3 208 69.2
GSVIVG01006732001 Vitis vinifera HOM05D006387 ORTHO05D008533 1.5e-74 283.5 215 65.1
GSVIVG01003594001 Vitis vinifera HOM05D006387 ORTHO05D008533 3.4e-74 282.3 215 64.7
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 7.5e-74 281.2 235 63.8
Lsat_1_v5_gn_2_70881 Lactuca sativa HOM05D006387 ORTHO05D008533 4.9e-73 278.5 197 70.6
unitig_748.g8645 Utricularia gibba HOM05D006387 ORTHO05D008533 6.4e-73 278.1 221 67.4
AT4G38090 Arabidopsis thaliana HOM05D006387 ORTHO05D008533 1.4e-72 276.9 172 87.2
Aqoxy6G01447 Aquilegia oxysepala HOM05D006387 ORTHO05D008533 5.4e-72 275.0 198 67.7
CDE08G1301 Ceratophyllum demersum HOM05D006387 ORTHO05D008533 1.6e-71 273.5 198 67.2
CANSAT01G3264 Cannabis sativa HOM05D006387 ORTHO05D008533 1.0e-70 270.8 190 75.3
Actinidia26608 Actinidia chinensis HOM05D006387 ORTHO05D008533 8.6e-70 267.7 202 66.3
FAN28G2490 Fragaria x ananassa HOM05D006387 ORTHO05D008533 7.3e-69 264.6 194 71.1
Zm00001eb038350 Zea mays HOM05D006387 ORTHO05D008533 7.3e-69 264.6 197 65.5
Os08g0478100 Oryza sativa ssp. japonica HOM05D006387 ORTHO05D008533 1.1e-67 260.8 194 66.0
ATR0022G066 Amborella trichopoda HOM05D006387 ORTHO05D008533 5.8e-66 255.0 202 63.4
SEGI_33925 Sequoiadendron giganteum HOM05D006387 ORTHO05D008533 9.9e-58 227.6 188 60.6
vmacro09229 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 3.9e-54 215.7 147 72.8
Glyma.08G280000 Glycine max HOM05D006387 ORTHO05D008533 4.0e-51 205.7 148 72.3
Gorai.007G059200 Gossypium raimondii HOM05D006387 ORTHO05D008533 2.6e-50 203.0 245 50.6
CSS0019105 Camellia sinensis var. sinensis HOM05D006387 ORTHO05D008533 1.3e-49 200.7 134 76.1
Gohir.D11G054100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.6e-47 193.7 245 49.8
Pp3c7_18820 Physcomitrium patens HOM05D006387 ORTHO05D008533 1.8e-46 190.3 198 50.5
vmacro14991 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 5.1e-46 188.7 160 60.6
CARHR246490 Cardamine hirsuta HOM05D006387 ORTHO05D008533 9.6e-45 184.5 136 75.7
AagrBONN_evm.TU.Sc2ySwM_344.3556 Anthoceros agrestis HOM05D006387 ORTHO05D008533 2.6e-42 176.4 181 53.0
Gohir.A11G050750 Gossypium hirsutum HOM05D006387 ORTHO05D008533 9.9e-42 174.5 251 44.2
Cre10.g448800 Chlamydomonas reinhardtii HOM05D006387 ORTHO05D008533 5.5e-40 168.7 231 44.2
SMO361G0736 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 2.7e-39 166.4 131 62.6
VMungo0251G0198 Vigna mungo HOM05D006387 ORTHO05D008533 3.4e-34 149.4 113 69.9
TPR.G1343 Trifolium pratense HOM05D000744 ORTHO05D000332 8.4e-33 144.8 117 62.4
PRCOL_00004912 Prasinoderma coloniale HOM05D006387 ORTHO05D008533 1.1e-32 144.4 187 42.8
vmacro10806 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 3.2e-32 142.9 114 62.3
SMO361G0500 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 7.9e-31 138.3 135 51.1
SMO361G0739 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.9e-29 133.7 98 65.3
FAN23G2995 Fragaria x ananassa HOM05D006387 ORTHO05D008533 2.5e-29 133.3 117 62.4
HPP92_016734 Vanilla planifolia HOM05D006387 ORTHO05D008533 4.8e-28 129.0 121 55.4
MCO03G602 Micromonas commoda HOM05D006387 ORTHO05D008533 1.8e-27 127.1 213 37.6
RcHm_v2.0_Chr2g0111411 Rosa chinensis HOM05D006387 ORTHO05D008533 2.7e-23 113.2 138 51.4
Ah.03g140080 Amaranthus hybridus HOM05D006387 ORTHO05D008533 7.4e-21 105.1 69 68.1
COL.COLO4_27345 Corchorus olitorius HOM05D000344 ORTHO05D000934 1.3e-17 94.4 76 65.8
HanXRQChr16g0520881 Helianthus annuus HOM05D006387 ORTHO05D008533 6.7e-14 82.0 51 76.5
Hma1.2p1_0119F.1_g056580 Hydrangea macrophylla HOM05D006387 ORTHO05D008533 1.5e-13 80.9 52 65.4
SMO004G0012 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.3e-12 77.8 65 60.0
vmacro18230 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 1.5e-10 70.9 61 50.8
vmacro18321 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 2.6e-10 70.1 56 50.0
vmacro18566 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 1.7e-09 67.4 52 53.8
Actinidia06523 Actinidia chinensis HOM05D009440 ORTHO05D011919 2.5e-08 63.5 43 72.1
HPP92_016750 Vanilla planifolia HOM05D006387 ORTHO05D008533 5.5e-08 62.4 68 51.5


User provided reference genes

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