Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 2.8e-70 268.5 133 100.0
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 4.8e-70 267.7 133 99.2
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 8.2e-70 266.9 133 98.5
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.4e-69 266.2 133 98.5
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 1.0e-67 260.0 131 97.7
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 1.3e-67 259.6 132 96.2
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 1.1e-66 256.5 131 96.2
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 6.0e-65 250.8 131 93.9
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 7.9e-65 250.4 130 95.4
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 7.9e-65 250.4 130 95.4
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 7.9e-65 250.4 130 95.4
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 1.8e-64 249.2 130 94.6
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 2.5e-63 245.4 133 89.5
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.3e-62 243.0 133 88.7
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.3e-62 243.0 133 88.7
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 4.8e-62 241.1 133 88.0
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 6.3e-62 240.7 129 89.9
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 8.2e-62 240.4 132 89.4
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 1.1e-61 240.0 132 89.4
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 1.1e-61 240.0 131 89.3
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 1.8e-61 239.2 133 87.2
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 2.4e-61 238.8 132 88.6
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 3.1e-61 238.4 130 90.0
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 3.1e-61 238.4 131 89.3
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 4.1e-61 238.0 132 88.6
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 4.1e-61 238.0 133 87.2
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 5.3e-61 237.7 133 88.0
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 5.3e-61 237.7 131 88.5
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.3e-61 237.7 131 88.5
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.3e-61 237.7 131 88.5
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 5.3e-61 237.7 131 88.5
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 9.0e-61 236.9 131 89.3
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 9.0e-61 236.9 133 86.5
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.2e-60 236.5 131 87.8
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 1.2e-60 236.5 133 87.2
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 1.5e-60 236.1 133 86.5
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 1.5e-60 236.1 131 87.8
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 2.0e-60 235.7 131 88.5
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 2.0e-60 235.7 131 87.8
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.0e-60 235.7 129 88.4
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 2.6e-60 235.3 130 88.5
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 2.6e-60 235.3 131 88.5
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.6e-60 235.3 131 88.5
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.6e-60 235.3 131 88.5
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 4.5e-60 234.6 131 87.8
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 4.5e-60 234.6 131 87.8
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 4.5e-60 234.6 133 86.5
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 4.5e-60 234.6 131 87.0
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 4.5e-60 234.6 131 87.8
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.9e-60 234.2 131 87.8
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 5.9e-60 234.2 130 86.9
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 7.7e-60 233.8 131 86.3
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.0e-59 233.4 133 84.2
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 1.3e-59 233.0 131 87.0
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 1.7e-59 232.6 130 87.7
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 2.9e-59 231.9 130 86.2
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 6.5e-59 230.7 133 85.0
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 6.5e-59 230.7 130 86.9
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 6.5e-59 230.7 131 88.5
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 8.5e-59 230.3 132 86.4
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.4e-58 229.6 131 85.5
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 1.9e-58 229.2 129 86.0
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 4.2e-58 228.0 131 84.7
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 7.2e-58 227.3 131 84.0
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 7.2e-58 227.3 130 86.2
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 1.2e-57 226.5 126 87.3
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 1.2e-57 226.5 132 83.3
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 1.6e-57 226.1 129 85.3
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 1.6e-57 226.1 133 84.2
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 6.1e-57 224.2 131 84.7
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 6.1e-57 224.2 131 84.7
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 6.1e-57 224.2 130 85.4
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 6.1e-57 224.2 131 84.7
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 7.9e-57 223.8 131 82.4
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 1.4e-56 223.0 129 82.9
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 2.3e-56 222.2 133 82.7
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 2.3e-56 222.2 133 83.5
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.0e-56 221.9 154 74.0
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.0e-56 221.9 131 83.2
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 3.9e-56 221.5 129 82.9
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 3.9e-56 221.5 130 83.8
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 3.9e-56 221.5 130 83.8
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 3.9e-56 221.5 131 81.7
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 3.9e-56 221.5 131 81.7
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 3.9e-56 221.5 133 82.7
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 3.9e-56 221.5 130 83.8
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 5.1e-56 221.1 130 84.6
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 6.7e-56 220.7 130 83.8
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 6.7e-56 220.7 130 83.8
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 1.1e-55 219.9 130 84.6
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.1e-55 219.9 133 82.0
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 2.5e-55 218.8 127 85.0
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 7.4e-55 217.2 128 82.0
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 7.4e-55 217.2 130 83.1
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 2.2e-54 215.7 130 80.0
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 3.1e-53 211.8 125 81.6
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 5.3e-53 211.1 128 78.1
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 6.9e-53 210.7 186 61.3
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 3.4e-52 208.4 131 76.3
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 4.5e-52 208.0 162 68.5
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.3e-51 206.5 162 67.9
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.8e-51 204.9 129 76.0
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 9.4e-50 200.3 129 74.4
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 3.0e-48 195.3 195 54.9
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 8.8e-48 193.7 132 65.9
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.0e-47 192.6 131 69.5
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 1.3e-46 189.9 131 75.6
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 1.1e-45 186.8 131 74.8
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 4.1e-45 184.9 102 84.3
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 9.1e-45 183.7 131 74.0
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 2.0e-44 182.6 130 63.8
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.7e-43 179.5 130 66.2
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 4.2e-42 174.9 123 65.9
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 9.4e-42 173.7 133 69.9
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 4.7e-41 171.4 130 61.5
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 4.8e-38 161.4 110 69.1
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 5.3e-37 157.9 139 64.7
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 6.5e-35 151.0 87 87.4
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 8.5e-35 150.6 88 86.4
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 8.5e-35 150.6 88 85.2
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.9e-34 149.4 79 86.1
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 1.9e-34 149.4 88 86.4
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 9.4e-34 147.1 88 83.0
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.6e-33 145.2 92 78.3
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.2e-32 141.4 80 80.0
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.3e-30 136.7 80 78.8
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 2.2e-30 136.0 86 79.1
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 3.7e-30 135.2 135 59.3
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 4.8e-30 134.8 86 77.9
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 4.8e-30 134.8 86 77.9
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.1e-29 132.1 87 75.9
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.3e-29 131.3 85 77.6
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 2.0e-28 129.4 71 81.7
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.0e-27 127.1 75 77.3
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 1.0e-27 127.1 100 69.0
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 8.5e-27 124.0 80 80.0
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.2e-26 122.1 89 71.9
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 9.4e-26 120.6 68 79.4
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 2.2e-22 109.4 65 75.4
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 4.5e-20 101.7 86 59.3
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 6.6e-19 97.8 86 60.5
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 6.1e-17 91.3 46 84.8
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.0e-16 90.5 86 55.8
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 2.3e-16 89.4 45 84.4
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 1.8e-13 79.7 56 73.2
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 4.3e-10 68.6 42 78.6
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 3.6e-09 65.5 41 70.7
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.4e-08 63.5 47 68.1


User provided reference genes

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