Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 1.3e-179 632.9 315 100.0
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 1.3e-169 599.7 315 94.9
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 1.2e-167 593.2 315 94.0
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 1.8e-163 579.3 315 92.1
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 1.9e-157 559.3 313 87.9
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 1.0e-155 553.5 314 87.9
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 1.1e-154 550.1 313 86.9
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 1.5e-154 549.7 315 86.0
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 2.8e-153 545.4 313 84.7
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 3.7e-153 545.0 313 86.3
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 4.1e-152 541.6 328 82.6
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 1.2e-151 540.0 328 82.9
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 1.3e-145 520.0 322 83.2
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 3.0e-115 419.1 320 69.1
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 1.7e-105 386.7 321 62.9
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 8.3e-105 384.4 314 63.7
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 1.6e-103 380.2 314 60.8
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 2.0e-103 379.8 347 58.8
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 3.0e-102 375.9 317 63.4
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 8.6e-102 374.4 321 61.7
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 4.3e-101 372.1 321 62.0
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 4.3e-101 372.1 321 62.3
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 4.7e-100 368.6 320 59.4
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 1.1e-99 367.5 320 59.4
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 1.5e-98 363.6 323 59.4
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 1.3e-97 360.5 311 61.7
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 1.1e-96 357.5 289 62.6
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 1.9e-96 356.7 317 58.7
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 3.9e-94 349.0 317 56.5
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 5.0e-94 348.6 276 64.1
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 6.6e-94 348.2 277 62.1
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 1.5e-93 347.1 317 57.1
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 1.5e-93 347.1 315 57.5
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 1.9e-93 346.7 315 57.5
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.5e-93 346.3 332 54.2
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 3.3e-93 345.9 318 57.5
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.6e-93 345.1 231 71.9
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.2e-92 341.7 277 61.4
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 8.1e-92 341.3 256 65.2
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.1e-91 340.9 318 54.7
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 1.1e-91 340.9 317 56.5
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 1.1e-91 340.9 315 56.2
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 3.1e-91 339.3 380 49.7
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.8e-91 338.2 291 58.8
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 8.9e-91 337.8 233 68.7
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 8.9e-91 337.8 277 61.7
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 1.2e-90 337.4 234 70.5
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 1.2e-90 337.4 234 70.5
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 3.4e-90 335.9 275 61.5
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 3.4e-90 335.9 321 55.5
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 5.8e-90 335.1 274 59.9
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 9.9e-90 334.3 250 64.8
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 2.2e-89 333.2 225 71.6
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.7e-89 332.4 296 57.8
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 2.4e-88 329.7 312 55.1
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 5.4e-88 328.6 225 69.3
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 1.2e-87 327.4 272 60.3
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 1.2e-87 327.4 227 70.9
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 3.5e-87 325.9 341 52.2
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 1.0e-86 324.3 333 54.1
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 1.0e-86 324.3 241 65.6
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 3.9e-86 322.4 273 60.8
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 5.1e-86 322.0 216 71.3
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 5.1e-86 322.0 323 55.1
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 8.6e-86 321.2 305 55.7
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 2.5e-85 319.7 216 69.9
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 4.3e-85 318.9 244 64.8
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 2.1e-84 316.6 309 55.0
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 2.6e-82 309.7 316 54.4
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 4.4e-82 308.9 219 70.3
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 4.4e-82 308.9 197 73.6
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 1.7e-81 307.0 204 70.6
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 1.7e-81 307.0 311 53.7
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 3.8e-81 305.8 285 53.7
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 7.8e-79 298.1 288 55.6
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 1.0e-78 297.7 247 57.5
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 6.6e-78 295.0 175 80.0
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 1.5e-77 293.9 293 57.0
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 2.1e-76 290.0 202 67.3
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 4.7e-76 288.9 294 54.4
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 4.7e-76 288.9 291 54.6
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 6.2e-76 288.5 272 55.9
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 6.4e-73 278.5 229 63.3
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 7.8e-71 271.6 233 58.8
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 1.7e-70 270.4 196 67.9
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 5.3e-67 258.8 317 47.9
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 9.3e-64 248.1 246 57.7
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 1.3e-62 244.2 173 68.8
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 1.2e-58 231.1 299 46.2
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 1.0e-54 218.0 244 49.2
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 1.3e-54 217.6 165 64.2
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 1.3e-52 211.1 383 36.3
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 1.6e-52 210.7 241 46.9
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 3.7e-52 209.5 168 62.5
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 6.9e-51 205.3 223 46.6
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 6.0e-47 192.2 212 43.9
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 1.8e-46 190.7 156 61.5
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 6.7e-46 188.7 200 47.5
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 2.2e-44 183.7 268 42.9
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.6e-42 176.8 363 35.8
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 4.5e-42 176.0 155 58.7
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 5.9e-42 175.6 224 43.8
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 6.1e-39 165.6 251 41.8
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 3.0e-38 163.3 129 63.6
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 3.1e-35 153.3 150 51.3
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 1.6e-31 141.0 253 38.7
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 2.4e-27 127.1 71 77.5
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 1.5e-26 124.4 111 62.2
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 4.5e-26 122.9 82 76.8
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 4.5e-26 122.9 82 76.8
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 1.0e-25 121.7 111 60.4
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 1.7e-25 120.9 69 79.7
C09p29080 Brassica napus HOM05D004613 ORTHO05D006095 5.0e-25 119.4 111 60.4
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 6.5e-25 119.0 157 45.9
C03p78440 Brassica napus HOM05D012085 ORTHO05D006095 1.4e-24 117.9 82 72.0
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 4.2e-24 116.3 83 72.3
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 9.4e-24 115.2 204 33.3
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 1.1e-19 101.7 57 84.2
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 4.5e-18 96.3 95 56.8
C01p25640 Brassica napus HOM05D004613 ORTHO05D006095 4.5e-18 96.3 86 62.8
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 4.5e-18 96.3 97 55.7
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 2.9e-17 93.6 186 38.2
BcaC07g37284 Brassica carinata HOM05D004613 ORTHO05D006095 5.0e-17 92.8 86 61.6
BolC8t47558H Brassica oleracea HOM05D004613 ORTHO05D006095 5.0e-17 92.8 86 61.6
BcaC09g50421 Brassica carinata HOM05D004613 ORTHO05D006095 1.1e-16 91.7 84 60.7
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 1.1e-16 91.7 58 79.3
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 2.5e-16 90.5 55 81.8
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 1.6e-15 87.8 59 74.6
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 1.6e-15 87.8 59 74.6
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 2.7e-15 87.0 49 83.7
C09p20670 Brassica napus HOM05D004613 ORTHO05D006095 1.2e-13 81.6 56 75.0
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 2.6e-13 80.5 50 78.0
C04p31600 Brassica napus HOM05D004613 ORTHO05D006095 5.7e-13 79.3 59 69.5
C02p33910 Brassica napus HOM05D004613 ORTHO05D006095 7.5e-13 79.0 51 78.4
C03p71850 Brassica napus HOM05D004613 ORTHO05D006095 7.5e-13 79.0 56 69.6
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 1.1e-11 75.1 52 65.4
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 3.5e-10 70.1 168 30.4
BcaB01g02574 Brassica carinata HOM05D001081 ORTHO05D004708 1.0e-09 68.6 49 71.4
C07p10570 Brassica napus HOM05D004613 ORTHO05D014940 1.7e-09 67.8 71 49.3
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 1.5e-08 64.7 95 37.9
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.9e-08 64.3 50 62.0
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.9e-08 64.3 50 62.0
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.9e-08 64.3 50 62.0
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.9e-08 64.3 50 62.0
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.9e-08 64.3 50 62.0
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.9e-08 64.3 50 62.0
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.9e-08 64.3 50 62.0
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 1.6e-07 61.2 29 86.2
BolC2t08054H Brassica oleracea HOM05D004613 ORTHO05D014940 6.1e-07 59.3 30 80.0
BraA06t25731Z Brassica rapa HOM05D030286 ORTHO05D014940 3.0e-06 57.0 27 92.6
BcaC02g11915 Brassica carinata HOM05D004613 ORTHO05D014940 4.0e-06 56.6 28 82.1
BcaB02g10346 Brassica carinata HOM05D004613 ORTHO05D014940 8.8e-06 55.5 29 79.3
C08p07130 Brassica napus HOM05D004613 ORTHO05D014940 8.8e-06 55.5 29 82.8


User provided reference genes

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