Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 2.9e-181 638.6 374 100.0
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 1.0e-170 603.6 373 92.2
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 5.3e-167 591.3 373 90.3
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 1.3e-157 560.1 292 92.8
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.9e-154 548.5 388 72.7
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 1.3e-149 533.5 279 92.8
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 2.9e-149 532.3 295 88.1
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 3.8e-149 531.9 291 89.3
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 1.9e-148 529.6 291 89.0
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 5.5e-148 528.1 291 89.0
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 7.2e-148 527.7 376 73.1
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 1.2e-147 526.9 291 88.7
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 3.6e-147 525.4 376 72.9
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 1.8e-146 523.1 295 88.5
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 3.0e-146 522.3 297 87.9
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 6.7e-146 521.2 291 88.0
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 2.2e-144 516.2 295 86.8
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 4.5e-142 508.4 296 84.8
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 6.5e-141 504.6 298 86.2
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 3.0e-138 495.7 284 85.9
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 7.0e-135 484.6 417 62.6
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.5e-132 476.9 288 82.3
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 4.4e-129 465.3 287 78.0
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 1.3e-128 463.8 373 63.8
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 4.9e-128 461.8 373 63.3
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 1.8e-127 459.9 375 63.2
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 3.1e-127 459.1 287 77.4
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 3.1e-127 459.1 287 77.4
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 3.1e-127 459.1 287 77.4
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 4.1e-127 458.8 375 62.9
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 2.7e-126 456.1 369 62.9
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 2.7e-126 456.1 289 76.8
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 2.7e-126 456.1 288 76.4
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 4.5e-126 455.3 290 76.9
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 5.9e-126 454.9 289 76.5
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 5.9e-126 454.9 289 76.5
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 7.8e-126 454.5 293 74.7
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 7.8e-126 454.5 375 62.4
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 1.3e-125 453.8 373 62.7
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 2.9e-125 452.6 293 75.4
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 3.8e-125 452.2 290 76.9
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 5.0e-125 451.8 288 76.0
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 1.1e-124 450.7 290 75.9
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.5e-124 450.3 373 61.7
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 1.5e-124 450.3 373 61.9
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.3e-124 449.1 288 75.0
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.3e-124 449.1 288 75.0
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 4.3e-124 448.7 289 75.4
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 4.3e-124 448.7 375 61.9
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 7.3e-124 448.0 289 74.4
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 9.5e-124 447.6 287 75.3
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 1.2e-123 447.2 288 74.7
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 1.6e-123 446.8 290 73.4
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 1.6e-123 446.8 285 76.1
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 2.1e-123 446.4 279 78.1
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 3.6e-123 445.7 375 62.4
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 3.6e-123 445.7 378 60.8
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 6.1e-123 444.9 288 73.6
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 6.1e-123 444.9 373 61.7
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 1.0e-122 444.1 285 75.8
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 3.0e-122 442.6 273 81.7
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 4.0e-122 442.2 287 75.3
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 4.0e-122 442.2 288 74.3
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 4.0e-122 442.2 373 61.9
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 5.2e-122 441.8 286 74.5
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 6.8e-122 441.4 288 73.6
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 6.8e-122 441.4 288 73.6
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 1.2e-121 440.7 289 74.0
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 1.5e-121 440.3 281 75.8
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 2.0e-121 439.9 288 74.0
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 2.0e-121 439.9 281 75.1
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 5.8e-121 438.3 289 74.0
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 5.8e-121 438.3 373 61.9
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 3.7e-120 435.6 278 75.9
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 6.4e-120 434.9 291 72.2
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 1.9e-119 433.3 291 71.8
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.4e-119 433.0 291 71.8
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 4.1e-119 432.2 283 73.1
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 9.2e-119 431.0 278 74.5
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 1.2e-118 430.6 287 73.2
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.2e-118 430.6 282 73.4
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 2.7e-118 429.5 272 75.7
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.7e-117 426.8 277 72.9
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.7e-117 426.8 300 70.7
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 2.3e-117 426.4 282 72.7
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 3.9e-117 425.6 287 72.8
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 5.0e-117 425.2 260 78.5
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 1.9e-116 423.3 264 78.0
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 2.5e-116 422.9 279 76.0
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 3.3e-116 422.5 286 72.7
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 3.6e-115 419.1 294 69.4
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 1.1e-114 417.5 282 72.7
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 5.2e-114 415.2 289 70.9
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 8.3e-112 407.9 284 71.5
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 1.1e-111 407.5 320 65.9
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 1.9e-111 406.8 288 70.1
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 5.4e-111 405.2 280 71.8
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 7.0e-111 404.8 265 74.7
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 9.2e-111 404.4 347 61.7
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 9.2e-111 404.4 374 57.8
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 7.8e-110 401.4 279 71.7
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 7.8e-110 401.4 260 76.5
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 5.6e-108 395.2 374 55.1
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 9.5e-108 394.4 271 69.0
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 4.7e-107 392.1 239 79.1
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 2.3e-106 389.8 278 68.3
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.1e-106 389.4 276 67.8
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 6.8e-106 388.3 229 81.2
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 5.8e-105 385.2 263 70.7
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 3.7e-104 382.5 280 68.9
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 6.4e-104 381.7 285 67.0
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 2.7e-102 376.3 284 64.8
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 6.0e-102 375.2 282 66.3
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 1.0e-101 374.4 297 65.3
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 2.3e-101 373.2 284 64.8
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 3.0e-101 372.9 284 64.4
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 7.3e-100 368.2 240 76.2
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 2.8e-99 366.3 287 64.8
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 2.8e-99 366.3 263 65.4
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 5.2e-98 362.1 234 74.8
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 9.9e-97 357.8 272 64.3
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 3.2e-95 352.8 313 60.4
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 3.2e-95 352.8 273 64.1
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 6.0e-94 348.6 320 58.8
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 7.8e-94 348.2 240 72.9
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 7.3e-92 341.7 287 61.3
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 7.3e-92 341.7 205 80.0
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 4.7e-91 339.0 276 64.5
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 8.1e-91 338.2 257 62.3
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 2.4e-90 336.7 276 64.1
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.4e-90 336.7 264 62.5
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 3.1e-90 336.3 255 68.2
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 6.9e-90 335.1 276 58.0
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 6.9e-90 335.1 276 64.5
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 1.5e-89 334.0 277 65.0
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 2.6e-89 333.2 259 67.6
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 9.9e-89 331.3 277 63.9
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 2.2e-88 330.1 276 63.4
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 2.2e-88 330.1 276 63.4
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 2.2e-88 330.1 276 63.4
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 3.8e-88 329.3 279 64.5
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.2e-86 324.3 266 57.9
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 3.5e-86 322.8 282 56.0
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 4.6e-86 322.4 246 67.5
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 1.3e-85 320.9 291 60.5
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 5.3e-82 308.9 292 58.9
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 7.6e-81 305.1 248 61.3
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 2.9e-80 303.1 302 57.6
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 6.0e-78 295.4 289 56.4
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.3e-76 289.7 279 58.1
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 3.5e-70 269.6 265 58.1
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 1.9e-68 263.8 177 74.0
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.3e-68 263.1 253 57.3
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 5.6e-68 262.3 296 51.7
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 8.4e-64 248.4 166 74.7
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 2.5e-63 246.9 167 69.5
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 3.0e-61 240.0 229 59.0
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.9e-60 237.3 231 54.5
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 3.7e-59 233.0 153 70.6
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 8.2e-59 231.9 275 49.5
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 9.0e-58 228.4 274 48.9
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 1.5e-57 227.6 153 69.9
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.2e-55 219.9 155 69.7
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 6.7e-53 212.2 169 59.8
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 5.7e-52 209.1 258 46.5
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.8e-48 196.4 250 48.4
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 7.2e-47 192.2 247 42.1
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 6.1e-46 189.1 212 47.6
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 5.1e-45 186.0 136 66.2
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 5.1e-45 186.0 145 61.4
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 2.8e-43 180.3 136 63.2
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 1.2e-41 174.9 262 38.5
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 2.2e-40 170.6 228 40.8
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 4.2e-39 166.4 109 72.5
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.9e-32 143.7 83 80.7
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.9e-31 141.0 122 60.7
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 3.2e-31 140.2 124 58.1
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.2e-31 140.2 126 62.7
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 8.0e-30 135.6 77 75.3
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 3.1e-26 123.6 88 65.9
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.0e-24 118.6 104 51.9
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 1.2e-20 105.1 54 96.3
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 4.5e-17 93.2 64 73.4
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 4.0e-13 80.1 51 76.5
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 4.0e-13 80.1 51 76.5
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 8.9e-13 79.0 51 74.5
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.6e-12 77.4 51 72.5
arahy.Tifrunner.gnm1.ann1.EX6GR6 Arachis hypogaea HOM05D003576 ORTHO05D004124 1.3e-08 65.1 59 50.8


User provided reference genes

Program Settings