Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G17792 Arabidopsis lyrata HOM05D000018 ORTHO05D003405 4.2e-22 107.1 52 100.0
Carub.0006s0647 Capsella rubella HOM05D000018 ORTHO05D003405 3.0e-20 100.9 52 94.2
AT5G07480 Arabidopsis thaliana HOM05D000018 ORTHO05D003405 2.0e-19 98.2 52 94.2
BcaC03g13200 Brassica carinata HOM05D000018 ORTHO05D003405 2.6e-19 97.8 52 90.4
C02p03140 Brassica napus HOM05D000018 ORTHO05D003405 2.6e-19 97.8 52 90.4
BolC2t06276H Brassica oleracea HOM05D000018 ORTHO05D003405 2.6e-19 97.8 52 90.4
BraA02t04920Z Brassica rapa HOM05D000018 ORTHO05D003405 9.7e-19 95.9 52 88.5
BcaB05g21614 Brassica carinata HOM05D000018 ORTHO05D003405 1.7e-18 95.1 50 90.0
BcaB05g21616 Brassica carinata HOM05D000018 ORTHO05D003405 1.7e-18 95.1 50 90.0
Sp6g35380 Schrenkiella parvula HOM05D000018 ORTHO05D003405 2.2e-18 94.7 52 90.4
Thhalv10015523m.g Eutrema salsugineum HOM05D000018 ORTHO05D003405 4.8e-18 93.6 52 86.5
CARHR205650 Cardamine hirsuta HOM05D000018 ORTHO05D003405 1.4e-17 92.0 52 86.5
BcaC06g32484 Brassica carinata HOM05D000018 ORTHO05D003405 1.8e-17 91.7 52 84.6
A10p29230 Brassica napus HOM05D000018 ORTHO05D003405 2.4e-17 91.3 52 84.6
BraA10t44969Z Brassica rapa HOM05D000018 ORTHO05D003405 2.4e-17 91.3 52 84.6
Aa31LG3G18920 Aethionema arabicum HOM05D000018 ORTHO05D003405 2.0e-16 88.2 52 82.7
BcaC06g32430 Brassica carinata HOM05D000018 ORTHO05D003405 2.0e-16 88.2 52 82.7
C09p69620 Brassica napus HOM05D000018 ORTHO05D003405 2.0e-16 88.2 52 82.7
BolC9t59705H Brassica oleracea HOM05D000018 ORTHO05D003405 2.0e-16 88.2 52 82.7
BcaB05g21611 Brassica carinata HOM05D000018 ORTHO05D003405 1.0e-12 75.9 40 87.5
arahy.Tifrunner.gnm1.ann1.87RHQT Arachis hypogaea HOM05D000018 ORTHO05D003405 1.4e-09 65.5 50 60.0
Gohir.D07G048500 Gossypium hirsutum HOM05D000018 ORTHO05D003405 1.4e-09 65.5 49 63.3
Gorai.001G051700 Gossypium raimondii HOM05D000018 ORTHO05D003405 1.4e-09 65.5 49 63.3
Sed0027259 Sechium edule HOM05D000018 ORTHO05D003405 2.4e-09 64.7 52 59.6
MELO3C017633.2 Cucumis melo HOM05D000018 ORTHO05D003405 3.1e-09 64.3 52 57.7
Medtr1g048940 Medicago truncatula HOM05D000018 ORTHO05D003405 3.1e-09 64.3 51 58.8
TWI39G1153 Tripterygium wilfordii HOM05D000018 ORTHO05D003405 3.1e-09 64.3 49 63.3
Potri.001G080600 Populus trichocarpa HOM05D000018 ORTHO05D003405 5.4e-09 63.5 50 60.0
Actinidia31662 Actinidia chinensis HOM05D000018 ORTHO05D003405 9.1e-09 62.8 52 55.8
arahy.Tifrunner.gnm1.ann1.8R6QZM Arachis hypogaea HOM05D000018 ORTHO05D003405 9.1e-09 62.8 55 58.2
arahy.Tifrunner.gnm1.ann1.UBZ7E4 Arachis hypogaea HOM05D000018 ORTHO05D003405 9.1e-09 62.8 52 59.6
Ciclev10006702m.g Citrus clementina HOM05D000018 ORTHO05D003405 9.1e-09 62.8 52 57.7
Cpa.g.sc13.240 Carica papaya HOM05D000018 ORTHO05D003405 1.2e-08 62.4 50 58.0
ClCG07G017130 Citrullus lanatus HOM05D000018 ORTHO05D003405 2.0e-08 61.6 52 53.8
Migut.F01207 Erythranthe guttata HOM05D000018 ORTHO05D003405 2.7e-08 61.2 49 57.1
CSS0026466 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D003405 4.5e-08 60.5 50 54.0
TPR.G19126 Trifolium pratense HOM05D000018 ORTHO05D003405 4.5e-08 60.5 52 57.7
CsaV3_4G004330 Cucumis sativus L. HOM05D000018 ORTHO05D003405 5.9e-08 60.1 52 51.9
ECA232G3119 Erigeron canadensis HOM05D000018 ORTHO05D003405 7.7e-08 59.7 49 57.1
Dinv16878 Davidia involucrata HOM05D000018 ORTHO05D003405 1.7e-07 58.5 50 56.0
Rhsim03G0160000 Rhododendron simsii HOM05D000018 ORTHO05D003405 1.7e-07 58.5 50 54.0
Lj6g0011069 Lotus japonicus HOM05D000018 ORTHO05D003405 2.2e-07 58.2 49 53.1
Sc16g0000620 Simmondsia chinensis HOM05D000018 ORTHO05D003405 2.2e-07 58.2 52 55.8
vmacro06843 Vaccinium macrocarpon HOM05D000018 ORTHO05D003405 2.2e-07 58.2 48 58.3
QL09p027673 Quercus lobata HOM05D000018 ORTHO05D003405 3.8e-07 57.4 48 56.2
Lalb_Chr01g0010551 Lupinus albus HOM05D000018 ORTHO05D003405 5.0e-07 57.0 52 50.0
Lalb_Chr01g0010601 Lupinus albus HOM05D000018 ORTHO05D003405 5.0e-07 57.0 52 50.0
MD01G1176500 Malus domestica HOM05D000018 ORTHO05D003405 6.5e-07 56.6 51 47.1
Peaxi162Scf01305g00029 Petunia axillaris HOM05D000018 ORTHO05D003405 1.1e-06 55.8 48 54.2
RcHm_v2.0_Chr1g0373511 Rosa chinensis HOM05D000018 ORTHO05D003405 1.1e-06 55.8 49 49.0
Nitab4.5_0002153g0080 Nicotiana tabacum HOM05D000018 ORTHO05D003405 2.5e-06 54.7 48 56.2
Peaxi162Scf00304g01019 Petunia axillaris HOM05D000018 ORTHO05D003405 2.5e-06 54.7 48 54.2
Aqoxy3G02703 Aquilegia oxysepala HOM05D000018 ORTHO05D003405 3.2e-06 54.3 51 51.0
FvH4_7g30770 Fragaria vesca HOM05D000018 ORTHO05D003405 3.2e-06 54.3 49 46.9
FAN01G0961 Fragaria x ananassa HOM05D000018 ORTHO05D003405 3.2e-06 54.3 49 46.9
ECA232G0676 Erigeron canadensis HOM05D000018 ORTHO05D003405 4.2e-06 53.9 49 53.1
Gohir.A07G044050 Gossypium hirsutum HOM05D000018 ORTHO05D003405 4.2e-06 53.9 40 62.5
Thecc.03G147300 Theobroma cacao HOM05D000018 ORTHO05D003405 4.2e-06 53.9 52 50.0
Prupe.2G271600 Prunus persica HOM05D000018 ORTHO05D003405 5.5e-06 53.5 49 51.0
Lsat_1_v5_gn_2_18921 Lactuca sativa HOM05D000018 ORTHO05D003405 7.2e-06 53.1 49 51.0
Lj1g0000492 Lotus japonicus HOM05D000018 ORTHO05D003405 9.5e-06 52.8 50 50.0


User provided reference genes

Program Settings